Rroxscaffold_6G00430710

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001834
Physical Location & Seq
Forward (+)
50840263 .. 50842773
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430710.1

Sequence Viewer

Length: 627 bp
ATGGCATGGGATGGCCGGCCTGACCGCCTGATTGGTTTGGCAAGTTTCAGGGAGGGGATAAAGATCGAGGTCATGATTCTCAAAGAAGAGATTGCAGGGCGTGCTAGCACACGGTCTGAAAGCCAAGTGTGCAATTGTAGATTTAGTACGTGTGATTCGGACTTATCAAGCAATTGTAAGCCGAGGAAGGAACAATCTTGGCTGAGGGATCGATGTCTTGGAGACAAGGCTAGGACTTTTGGGTTGTTCAATGGACGAGTCGCAAATAGTGATTGCTTCTTCTTTCCCATGACTAACGAAACAAAAAACGAAGATCACGTAACACCTACTCAAAAGACCATAGCCAGTGCAGCTAATCTTGCTAACCTCCTACCTACCGGCACCGTCCTGGCATTTGAGACACTCATTCCTAGTTTCTCTAACAATGGAGCATGCCATCCTGCCAATAAGGGCCTTTCAATATCCATCATTATAATCTGTGCCATTATCTGCTGCTTCTGCTCCTTTACTGATAGCTTCATAGACAGTACCGATGGAAAATTCTACTATGGTATCATCACTCGTGAAGCCATTTACATCTTAAATCCTAGAGCAAAGGAGCTTACGATTGTCGAAAAAAGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

208

Amino Acids

23.0

Weight (kDa)

7.45

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 116 - 199 3.5e-28 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 539
AfaI GTAC 2 cut(s) 148, 529
AfeI AGCGCT 1 cut(s) 622
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 250, 459
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 3 cut(s) 353, 516, 601
AluI AGCT 3 cut(s) 353, 516, 601
Alw26I GTCTC 2 cut(s) 216, 392
AlwI GGATC 1 cut(s) 216
Aor51HI AGCGCT 1 cut(s) 622
AoxI GGCC 3 cut(s) 13, 17, 451
ApeKI GCWGC 2 cut(s) 350, 492
ApoI RAATTY 1 cut(s) 539
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 451
AsuNHI GCTAGC 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 535, 568
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 561
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 362, 479
BccI CCATC 4 cut(s) 5, 444, 473, 527
BciT130I CCWGG 1 cut(s) 389
BcoDI GTCTC 2 cut(s) 216, 392
BfaI CTAG 4 cut(s) 105, 231, 411, 588
BfoI RGCGCY 1 cut(s) 624
BisI GCNGC 2 cut(s) 351, 493
BlsI GCNGC 2 cut(s) 352, 494
Bme1390I CCNGG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 389
BmtI GCTAGC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 211
BsaAI YACGTR 2 cut(s) 150, 319
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 182
Bse118I RCCGGY 2 cut(s) 15, 377
Bse1I ACTGG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 389
BseCI ATCGAT 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 16, 436
BseJI GATNNNNATC 1 cut(s) 62
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 362, 479
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 3 cut(s) 15, 19, 453
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 211
BsiSI CCGG 2 cut(s) 16, 378
BsmAI GTCTC 2 cut(s) 216, 392
BsnI GGCC 3 cut(s) 15, 19, 453
Bsp143I GATC 3 cut(s) 63, 208, 313
BspACI CCGC 1 cut(s) 25
BspANI GGCC 3 cut(s) 15, 19, 453
BspCNI CTCAG 1 cut(s) 195
BspDI ATCGAT 1 cut(s) 211
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 382
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 380
BsrFI RCCGGY 2 cut(s) 15, 377
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 2 cut(s) 15, 377
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 63, 208, 313
BssSI CACGAG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 3 cut(s) 114, 385, 527
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 101
BstBAI YACGTR 2 cut(s) 150, 319
BstC8I GCNNGC 4 cut(s) 17, 102, 106, 433
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 16, 436
BstH2I RGCGCY 1 cut(s) 624
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 3 cut(s) 66, 211, 316
BstMAI GTCTC 2 cut(s) 216, 392
BstMBI GATC 3 cut(s) 63, 208, 313
BstMWI GCNNNNNNNGC 5 cut(s) 101, 129, 350, 359, 498
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 362, 479
Bsu15I ATCGAT 1 cut(s) 211
BsuRI GGCC 3 cut(s) 15, 19, 453
BsuTUI ATCGAT 1 cut(s) 211
BtsCI GGATG 2 cut(s) 16, 436
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 4 cut(s) 17, 102, 106, 433
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 623
Cfr10I RCCGGY 2 cut(s) 15, 377
Cfr13I GGNCC 1 cut(s) 451
ClaI ATCGAT 1 cut(s) 211
Csp6I GTAC 2 cut(s) 147, 528
CviAII CATG 4 cut(s) 6, 73, 289, 432
CviQI GTAC 2 cut(s) 147, 528
DdeI CTNAG 1 cut(s) 203
DpnI GATC 3 cut(s) 65, 210, 315
DpnII GATC 3 cut(s) 63, 208, 313
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco47III AGCGCT 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 9, 76, 292, 435
FaiI YATR 8 cut(s) 7, 74, 290, 341, 433, 473, 521, 549
FatI CATG 4 cut(s) 5, 72, 288, 431
Fnu4HI GCNGC 2 cut(s) 351, 493
FokI GGATG 2 cut(s) 23, 423
FseI GGCCGGCC 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 351, 493
FspBI CTAG 4 cut(s) 105, 231, 411, 588
GlaI GCGC 1 cut(s) 622
GluI GCNGC 2 cut(s) 351, 493
HaeII RGCGCY 1 cut(s) 624
HaeIII GGCC 3 cut(s) 15, 19, 453
HapII CCGG 2 cut(s) 16, 378
HhaI GCGC 1 cut(s) 623
Hin1II CATG 4 cut(s) 9, 76, 292, 435
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HinfI GANTC 3 cut(s) 76, 155, 258
HpaII CCGG 2 cut(s) 16, 378
Hpy188I TCNGA 2 cut(s) 118, 160
Hpy188III TCNNGA 2 cut(s) 73, 563
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 3 cut(s) 114, 385, 527
HpyCH4IV ACGT 2 cut(s) 149, 318
HpyCH4V TGCA 3 cut(s) 95, 132, 350
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 129, 350, 359, 498
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 2 cut(s) 149, 318
Hsp92II CATG 4 cut(s) 9, 76, 292, 435
HspAI GCGC 1 cut(s) 621
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 63, 208, 313
LmnI GCTCC 3 cut(s) 428, 506, 598
Lsp1109I GCAGC 2 cut(s) 362, 479
MaeI CTAG 4 cut(s) 105, 231, 411, 588
MaeII ACGT 2 cut(s) 149, 318
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 65, 210, 315
MboI GATC 3 cut(s) 63, 208, 313
MboII GAAGA 3 cut(s) 98, 271, 323
MfeI CAATTG 2 cut(s) 133, 172
MluCI AATT 3 cut(s) 133, 172, 539
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 5 cut(s) 46, 61, 177, 198, 377
MroNI GCCGGC 1 cut(s) 15
MseI TTAA 1 cut(s) 581
MspI CCGG 2 cut(s) 16, 378
MspR9I CCNGG 1 cut(s) 389
MunI CAATTG 2 cut(s) 133, 172
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 5 cut(s) 101, 129, 350, 359, 498
NaeI GCCGGC 1 cut(s) 17
NdeII GATC 3 cut(s) 63, 208, 313
NgoMIV GCCGGC 1 cut(s) 15
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 9, 76, 292, 435
NlaIV GGNNCC 1 cut(s) 382
NmeAIII GCCGAG 1 cut(s) 207
NspI RCATGY 1 cut(s) 435
PaeI GCATGC 1 cut(s) 435
PagI TCATGA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 76, 155
PkrI GCNGC 2 cut(s) 352, 494
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 2 cut(s) 150, 319
PsiI TTATAA 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 1 cut(s) 451
RigI GGCCGGCC 1 cut(s) 19
RsaI GTAC 2 cut(s) 148, 529
RsaNI GTAC 2 cut(s) 147, 528
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 2 cut(s) 351, 493
Sau3AI GATC 3 cut(s) 63, 208, 313
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 389
SetI ASST 9 cut(s) 72, 152, 321, 328, 355, 369, 376, 518, 603
SphI GCATGC 1 cut(s) 435
Sse9I AATT 3 cut(s) 133, 172, 539
SsiI CCGC 1 cut(s) 25
SspMI CTAG 4 cut(s) 105, 231, 411, 588
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 3 cut(s) 114, 385, 527
TaiI ACGT 2 cut(s) 152, 321
TaqI TCGA 3 cut(s) 66, 211, 612
TasI AATT 3 cut(s) 133, 172, 539
TfiI GAWTC 2 cut(s) 76, 155
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 350, 492
TspDTI ATGAA 1 cut(s) 508
TspRI CASTG 1 cut(s) 352
XapI RAATTY 1 cut(s) 539
XceI RCATGY 1 cut(s) 435
XspI CTAG 4 cut(s) 105, 231, 411, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.