Rorug02G0651400

Protein of unknown function (DUF679)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
75925052 .. 75927296
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0651400.1

Sequence Viewer

Length: 957 bp
ATGCTCAGATCATTTGCCATCAGCAGATTCAAAGAGGCAGCTGGAGCAGCTAGAGGGCTCAAGTACTACTACGGCAACATCAGCTGCAATCATGTTCTCTGTAAGCGAACGAGACCTTATTCAACCGCTGGCCGTAGTGGAAATGGAAGGCTGGAAGGTAAGGTAGCCTTAATAACAGGGTCCGCAAGTGGGCTCGGGAAGGCAGCGGCCCACGAATTCATCGAAAATGGGGCTCATGTCATGATTGCAGATACTGATTGTGAGATGGGCCAACAAGTAGCCGAAGAGCTGGGCTCAACAGCCCACTTTGTGGAATGCGACGTTGCTGTTGAGTCACAAGTAGCAGAAGCTGTAGAAACCACCATGGAAAGGTACGGAAAGCTTGACATAATGTACAACAATGCTGGAATAACCGGGCCGACAATCCCACCCAGCATTGCCGACCTCGATCTCGATGAGTTTGACCGTGTCATGCGGATCAACGTGAGGGGAACAATTGCCGGGATAAAGCATGCGGCCCGAGTGATGATCCCATTGGGCTCGGGGTCCATACTGTGCACATCTAGCATTACTGGGCTCCTGGGTGGGCTTGGGCCGCATCCTTACTCGATTTCGAAGTTTACAATACCAGGCATAGTGAAGTCTGTGGCAAGCGAGCTGTGCCGAAGTGGGGTTCGAATCAATTGCATTTCACCGGCTCCAATTCCAACGCCTCTTGTGGTTAGGGAGATAAGTCGGTTTTATCCAGGGGCAAGGGAGGAGCAGATTATAGAGATAGTGAATGGTGTGGGAGAACTTAAGGGTGCAAAGGCGGAGGCAGTAGATGTAGCCAAGGCAGCGCTCTATTTGGCCTCTGATGAAGCAAAGTATGTAACAGGTCATAATCTAGTCGTCGATGGAGGCTTCACCTGCTTTAAAACTCTTAGCTTTCCTCATCCTGATCAAGTACTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

33.77

Weight (kDa)

6.46

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 54 - 240 9e-47 short chain dehydrogenase
KR PF08659 56 - 205 1.4e-10 KR domain
adh_short_C2 PF13561 60 - 303 1.8e-57 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 917
Acc36I ACCTGC 1 cut(s) 917
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 7 cut(s) 126, 183, 206, 475, 515, 596, 812
AclWI GGATC 2 cut(s) 485, 523
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 4 cut(s) 65, 374, 395, 948
AfeI AGCGCT 1 cut(s) 840
AfiI CCNNNNNNNGG 4 cut(s) 189, 310, 369, 670
AflII CTTAAG 1 cut(s) 797
AgsI TTSAA 2 cut(s) 31, 123
AjnI CCWGG 3 cut(s) 579, 628, 745
AluBI AGCT 8 cut(s) 41, 50, 84, 289, 350, 382, 658, 927
AluI AGCT 8 cut(s) 41, 50, 84, 289, 350, 382, 658, 927
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 556
AlwI GGATC 2 cut(s) 485, 523
AlwNI CAGNNNCTG 2 cut(s) 254, 350
Ama87I CYCGRG 3 cut(s) 194, 519, 541
Aor51HI AGCGCT 1 cut(s) 840
AoxI GGCC 7 cut(s) 130, 207, 268, 416, 516, 593, 849
ApaLI GTGCAC 1 cut(s) 556
ApeKI GCWGC 5 cut(s) 38, 47, 84, 203, 836
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 7 cut(s) 180, 208, 268, 416, 517, 546, 593
AsuC2I CCSGG 2 cut(s) 415, 502
AsuHPI GGTGA 2 cut(s) 684, 898
AsuII TTCGAA 2 cut(s) 614, 676
AvaI CYCGRG 3 cut(s) 194, 519, 541
AvaII GGWCC 2 cut(s) 180, 546
BaeGI GKGCMC 1 cut(s) 560
BanII GRGCYC 6 cut(s) 60, 195, 235, 296, 542, 579
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 5 cut(s) 50, 59, 71, 215, 848
BccI CCATC 3 cut(s) 26, 259, 890
BceAI ACGGC 2 cut(s) 88, 117
BcgI CGANNNNNNTGC 2 cut(s) 666, 700
BciT130I CCWGG 3 cut(s) 581, 630, 747
BclI TGATCA 1 cut(s) 940
BcnI CCSGG 2 cut(s) 415, 502
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 3 cut(s) 51, 564, 887
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 842
BfrI CTTAAG 1 cut(s) 797
BfuAI ACCTGC 1 cut(s) 917
BisI GCNGC 8 cut(s) 39, 48, 85, 204, 207, 516, 596, 837
BlsI GCNGC 8 cut(s) 40, 49, 86, 205, 208, 517, 597, 838
BmcAI AGTACT 2 cut(s) 65, 948
Bme1390I CCNGG 5 cut(s) 415, 502, 581, 630, 747
Bme18I GGWCC 2 cut(s) 180, 546
BmeT110I CYCGRG 3 cut(s) 194, 519, 541
BmgT120I GGNCC 7 cut(s) 180, 208, 268, 416, 517, 546, 593
BmiI GGNNCC 4 cut(s) 181, 547, 578, 699
BmrFI CCNGG 5 cut(s) 415, 502, 581, 630, 747
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 1 cut(s) 63
Bpu14I TTCGAA 2 cut(s) 614, 676
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 415, 502
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 4 cut(s) 363, 580, 746, 831
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 310, 369, 670
Bse118I RCCGGY 1 cut(s) 694
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 3 cut(s) 581, 630, 747
BseDI CCNNGG 4 cut(s) 363, 580, 746, 831
BseGI GGATG 2 cut(s) 598, 934
BseLI CCNNNNNNNGG 4 cut(s) 189, 310, 369, 670
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 1 cut(s) 773
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 5 cut(s) 50, 59, 71, 215, 848
BseYI CCCAGC 2 cut(s) 289, 431
BshFI GGCC 7 cut(s) 132, 209, 270, 418, 518, 595, 851
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 3 cut(s) 194, 519, 541
BsiSI CCGG 3 cut(s) 414, 501, 695
BslI CCNNNNNNNGG 4 cut(s) 189, 310, 369, 670
BsmAI GTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 7 cut(s) 132, 209, 270, 418, 518, 595, 851
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 3 cut(s) 194, 519, 541
Bsp119I TTCGAA 2 cut(s) 614, 676
Bsp1286I GDGCHC 7 cut(s) 60, 195, 235, 296, 542, 560, 579
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 5 cut(s) 8, 448, 477, 528, 940
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 7 cut(s) 126, 183, 206, 475, 515, 596, 812
BspANI GGCC 7 cut(s) 132, 209, 270, 418, 518, 595, 851
BspCNI CTCAG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 4 cut(s) 181, 547, 578, 699
BspMI ACCTGC 1 cut(s) 917
BspPI GGATC 2 cut(s) 485, 523
BspQI GCTCTTC 1 cut(s) 279
BspT104I TTCGAA 2 cut(s) 614, 676
BspTI CTTAAG 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 694
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 4 cut(s) 363, 580, 746, 831
BssMI GATC 5 cut(s) 8, 448, 477, 528, 940
BssT1I CCWWGG 2 cut(s) 363, 831
Bst2UI CCWGG 3 cut(s) 581, 630, 747
Bst4CI ACNGT 2 cut(s) 467, 555
Bst6I CTCTTC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 797
BstAUI TGTACA 1 cut(s) 393
BstBI TTCGAA 2 cut(s) 614, 676
BstC8I GCNNGC 4 cut(s) 130, 513, 652, 656
BstDEI CTNAG 2 cut(s) 5, 923
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 598, 934
BstH2I RGCGCY 1 cut(s) 842
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 5 cut(s) 11, 451, 480, 531, 943
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 5 cut(s) 8, 448, 477, 528, 940
BstMWI GCNNNNNNNGC 8 cut(s) 44, 47, 81, 564, 595, 660, 836, 909
BstNI CCWGG 3 cut(s) 581, 630, 747
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 5 cut(s) 413, 500, 579, 628, 745
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 5 cut(s) 50, 59, 71, 215, 848
BsuRI GGCC 7 cut(s) 132, 209, 270, 418, 518, 595, 851
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 598, 934
BveI ACCTGC 1 cut(s) 917
Cac8I GCNNGC 4 cut(s) 130, 513, 652, 656
CaiI CAGNNNCTG 2 cut(s) 254, 350
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 841
Cfr10I RCCGGY 1 cut(s) 694
Cfr13I GGNCC 7 cut(s) 180, 208, 268, 416, 517, 546, 593
Csp6I GTAC 4 cut(s) 64, 373, 394, 947
CviAII CATG 6 cut(s) 92, 236, 241, 364, 472, 512
CviQI GTAC 4 cut(s) 64, 373, 394, 947
DdeI CTNAG 2 cut(s) 5, 923
DpnI GATC 5 cut(s) 10, 450, 479, 530, 942
DpnII GATC 5 cut(s) 8, 448, 477, 528, 940
DraI TTTAAA 1 cut(s) 916
DraIII CACNNNGTG 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 1 cut(s) 827
Eco130I CCWWGG 2 cut(s) 363, 831
Eco24I GRGCYC 6 cut(s) 60, 195, 235, 296, 542, 579
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 180, 546
Eco47III AGCGCT 1 cut(s) 840
Eco88I CYCGRG 3 cut(s) 194, 519, 541
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 579, 628, 745
EcoT14I CCWWGG 2 cut(s) 363, 831
EcoT38I GRGCYC 6 cut(s) 60, 195, 235, 296, 542, 579
ErhI CCWWGG 2 cut(s) 363, 831
FaeI CATG 6 cut(s) 95, 239, 244, 367, 475, 515
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 6 cut(s) 91, 235, 240, 363, 471, 511
FbaI TGATCA 1 cut(s) 940
Fnu4HI GCNGC 8 cut(s) 39, 48, 85, 204, 207, 516, 596, 837
FokI GGATG 2 cut(s) 585, 921
FriOI GRGCYC 6 cut(s) 60, 195, 235, 296, 542, 579
Fsp4HI GCNGC 8 cut(s) 39, 48, 85, 204, 207, 516, 596, 837
FspBI CTAG 3 cut(s) 51, 564, 887
GlaI GCGC 1 cut(s) 840
GluI GCNGC 8 cut(s) 39, 48, 85, 204, 207, 516, 596, 837
GsaI CCCAGC 2 cut(s) 293, 435
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 842
HaeIII GGCC 7 cut(s) 132, 209, 270, 418, 518, 595, 851
HapII CCGG 3 cut(s) 414, 501, 695
HhaI GCGC 1 cut(s) 841
Hin1II CATG 6 cut(s) 95, 239, 244, 367, 475, 515
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 27, 332, 678
HpaII CCGG 3 cut(s) 414, 501, 695
HphI GGTGA 2 cut(s) 684, 898
Hpy166II GTNNAC 2 cut(s) 558, 621
Hpy188I TCNGA 2 cut(s) 8, 856
Hpy188III TCNNGA 4 cut(s) 196, 241, 452, 938
Hpy8I GTNNAC 2 cut(s) 558, 621
Hpy99I CGWCG 2 cut(s) 323, 896
HpyAV CCTTC 3 cut(s) 141, 149, 193
HpyCH4III ACNGT 2 cut(s) 467, 555
HpyCH4IV ACGT 2 cut(s) 321, 483
HpyCH4V TGCA 5 cut(s) 87, 248, 558, 687, 806
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 47, 81, 564, 595, 660, 836, 909
HpyF3I CTNAG 2 cut(s) 5, 923
HpySE526I ACGT 2 cut(s) 321, 483
Hsp92II CATG 6 cut(s) 95, 239, 244, 367, 475, 515
HspAI GCGC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 5 cut(s) 8, 448, 477, 528, 940
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 4 cut(s) 44, 582, 703, 760
Lsp1109I GCAGC 5 cut(s) 50, 59, 71, 215, 848
LweI GCATC 1 cut(s) 607
MaeI CTAG 3 cut(s) 51, 564, 887
MaeII ACGT 2 cut(s) 321, 483
MaeIII GTNAC 2 cut(s) 333, 871
MalI GATC 5 cut(s) 10, 450, 479, 530, 942
MboI GATC 5 cut(s) 8, 448, 477, 528, 940
MboII GAAGA 1 cut(s) 296
MfeI CAATTG 2 cut(s) 495, 682
MhlI GDGCHC 7 cut(s) 60, 195, 235, 296, 542, 560, 579
MluCI AATT 4 cut(s) 215, 495, 682, 702
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 731
MseI TTAA 3 cut(s) 170, 798, 915
MspA1I CMGCKG 4 cut(s) 41, 84, 128, 206
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 3 cut(s) 414, 501, 695
MspR9I CCNGG 5 cut(s) 415, 502, 581, 630, 747
MunI CAATTG 2 cut(s) 495, 682
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 3 cut(s) 581, 630, 747
MwoI GCNNNNNNNGC 8 cut(s) 44, 47, 81, 564, 595, 660, 836, 909
NciI CCSGG 2 cut(s) 415, 502
NcoI CCATGG 1 cut(s) 363
NdeII GATC 5 cut(s) 8, 448, 477, 528, 940
NlaIII CATG 6 cut(s) 95, 239, 244, 367, 475, 515
NlaIV GGNNCC 4 cut(s) 181, 547, 578, 699
NmuCI GTSAC 1 cut(s) 333
NspI RCATGY 1 cut(s) 515
NspV TTCGAA 2 cut(s) 614, 676
PaeI GCATGC 1 cut(s) 515
PagI TCATGA 1 cut(s) 240
PaqCI CACCTGC 1 cut(s) 917
PciSI GCTCTTC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 27, 678
PflFI GACNNNGTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 8 cut(s) 40, 49, 86, 205, 208, 517, 597, 838
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 3 cut(s) 579, 628, 745
PspFI CCCAGC 2 cut(s) 289, 431
PspGI CCWGG 3 cut(s) 579, 628, 745
PspN4I GGNNCC 4 cut(s) 181, 547, 578, 699
PspPI GGNCC 7 cut(s) 180, 208, 268, 416, 517, 546, 593
PstNI CAGNNNCTG 2 cut(s) 254, 350
PsyI GACNNNGTC 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 41, 84
RsaI GTAC 4 cut(s) 65, 374, 395, 948
RsaNI GTAC 4 cut(s) 64, 373, 394, 947
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 170, 798, 915
SatI GCNGC 8 cut(s) 39, 48, 85, 204, 207, 516, 596, 837
Sau3AI GATC 5 cut(s) 8, 448, 477, 528, 940
Sau96I GGNCC 7 cut(s) 180, 208, 268, 416, 517, 546, 593
ScaI AGTACT 2 cut(s) 65, 948
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 5 cut(s) 415, 502, 581, 630, 747
SduI GDGCHC 7 cut(s) 60, 195, 235, 296, 542, 560, 579
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 1 cut(s) 351
SfuI TTCGAA 2 cut(s) 614, 676
SinI GGWCC 2 cut(s) 180, 546
SmlI CTYRAG 2 cut(s) 59, 797
SmoI CTYRAG 2 cut(s) 59, 797
SphI GCATGC 1 cut(s) 515
Sse9I AATT 4 cut(s) 215, 495, 682, 702
SsiI CCGC 7 cut(s) 126, 183, 206, 475, 515, 596, 812
SspMI CTAG 3 cut(s) 51, 564, 887
StyD4I CCNGG 5 cut(s) 413, 500, 579, 628, 745
StyI CCWWGG 2 cut(s) 363, 831
TaaI ACNGT 2 cut(s) 467, 555
TaiI ACGT 2 cut(s) 324, 486
TaqI TCGA 7 cut(s) 222, 447, 453, 608, 614, 676, 894
TasI AATT 4 cut(s) 215, 495, 682, 702
TatI WGTACW 3 cut(s) 63, 393, 946
TauI GCSGC 3 cut(s) 209, 518, 598
TfiI GAWTC 2 cut(s) 27, 678
Tru1I TTAA 3 cut(s) 170, 798, 915
Tru9I TTAA 3 cut(s) 170, 798, 915
TseFI GTSAC 1 cut(s) 333
TseI GCWGC 5 cut(s) 38, 47, 84, 203, 836
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 208, 873
TspGWI ACGGA 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 467
Van91I CCANNNNNTGG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 797
VneI GTGCAC 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 180, 546
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 515
XspI CTAG 3 cut(s) 51, 564, 887
ZrmI AGTACT 2 cut(s) 65, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.