Rh3DG056300

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001834
Physical Location & Seq
Forward (+)
3840065 .. 3840808
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG056300.1

Sequence Viewer

Length: 744 bp
ATGTCTACTGAAAAACCCGAAACGCTCGCACCAGCACCCATTCCAAAGACCATATCCAGCACAGCCAATCTTGCCAACCTCCTACCTACCGGCACCGTCCTCGCATTCCAGACCCTCATCCCTAGCTTCTCTAACAACGGATCATGCCATCCTTCCAATAAGGGCCTTACGATATCCATCATTGTAATCTGTGCCCTTTTATGCTTCTTCTCTTCTTTTACTGATAGCTTCATAGACAGTACCGATGGAAAATTCTATTATGGTATTGCCACTAGTGAAGGTATGTATATCTTAAACTCCACGTCAGAGGATACTAAACAACGAAGGCGTCGCTTGAAAGGGTATAGGAGAATGCCTGTAGATCATTTTCACGCCCTTATGTCACTAACTCTGTTCTTGATCTATGCTTTAACCAACCTCAACGTGAAAGATTGTTTCTTTCCCGAAGCAGGAGATAATCTTTCTCAAGTCATTATCAATTTGCCATTAGGAGCTGGGATTTTCGCATGCTTATTATTCACTATTTTTCCAACTATTAGAAGAGGAATTGGATTCACCCTGCTTCCTCCTGAAAAGGTAAAAGAAGCCGAGGGCCAAGCCTCGACCACACCCCAAGGATTAACCCTGAAAAAGGAGGTTGTAGTTGAAATAGAAACCGATGCCCAGCCCTTGGCCACAACCTCGACTCCAATCCTCAACCATTCCGGCGGCCGCTCTTATAGTAAAGAGAATCATTGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

247

Amino Acids

26.96

Weight (kDa)

7.62

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 19 - 185 1.5e-56 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 670
AccBSI CCGCTC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 708, 712
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 2 cut(s) 672, 709
AcsI RAATTY 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 449, 631, 670
AgsI TTSAA 2 cut(s) 337, 647
AhlI ACTAGT 1 cut(s) 272
AjiI CACGTC 1 cut(s) 303
AluBI AGCT 3 cut(s) 126, 228, 494
AluI AGCT 3 cut(s) 126, 228, 494
AlwI GGATC 1 cut(s) 148
AoxI GGCC 4 cut(s) 163, 592, 672, 709
ApoI RAATTY 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 163, 592
AsuHPI GGTGA 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 196
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 1 cut(s) 92
BccI CCATC 3 cut(s) 156, 185, 239
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciVI GTATCC 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 2 cut(s) 123, 273
BfmI CTRYAG 2 cut(s) 357, 740
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 2 cut(s) 709, 712
BlsI GCNGC 2 cut(s) 710, 713
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 163, 592
BmiI GGNNCC 1 cut(s) 94
BmsI GCATC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 588, 613, 669
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 631, 670
Bse118I RCCGGY 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 588, 613, 669
BseGI GGATG 2 cut(s) 117, 148
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 3 cut(s) 449, 631, 670
BseSI GKGCMC 1 cut(s) 196
BseX3I CGGCCG 1 cut(s) 709
BseYI CCCAGC 2 cut(s) 494, 663
Bsh1285I CGRYCG 1 cut(s) 712
BshFI GGCC 4 cut(s) 165, 594, 674, 711
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 712
BsiSI CCGG 2 cut(s) 90, 705
BslI CCNNNNNNNGG 3 cut(s) 449, 631, 670
BsmI GAATGC 2 cut(s) 104, 357
BsnI GGCC 4 cut(s) 165, 594, 674, 711
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 140, 361, 399
BspACI CCGC 2 cut(s) 708, 712
BspANI GGCC 4 cut(s) 165, 594, 674, 711
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 588, 613, 669
BssMI GATC 3 cut(s) 140, 361, 399
BssNI GRCGYC 1 cut(s) 328
BssT1I CCWWGG 2 cut(s) 613, 669
Bst4CI ACNGT 2 cut(s) 97, 239
Bst6I CTCTTC 2 cut(s) 217, 535
BstACI GRCGYC 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 27, 508
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 2 cut(s) 117, 148
BstKTI GATC 3 cut(s) 143, 364, 402
BstMBI GATC 3 cut(s) 140, 361, 399
BstMCI CGRYCG 1 cut(s) 712
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 510
BstSFI CTRYAG 2 cut(s) 357, 740
BstSLI GKGCMC 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 709
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 4 cut(s) 165, 594, 674, 711
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 117, 148
Cac8I GCNNGC 2 cut(s) 27, 508
CciNI GCGGCCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 163, 592
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 144, 507
CviQI GTAC 1 cut(s) 240
DpnI GATC 3 cut(s) 142, 363, 401
DpnII GATC 3 cut(s) 140, 361, 399
EaeI YGGCCR 2 cut(s) 672, 709
EagI CGGCCG 1 cut(s) 709
Eam1104I CTCTTC 2 cut(s) 217, 535
EarI CTCTTC 2 cut(s) 217, 535
EclXI CGGCCG 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 613, 669
Eco32I GATATC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 163
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 613, 669
ErhI CCWWGG 2 cut(s) 613, 669
FaeI CATG 2 cut(s) 147, 510
FatI CATG 2 cut(s) 143, 506
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 709, 712
FokI GGATG 2 cut(s) 104, 135
Fsp4HI GCNGC 2 cut(s) 709, 712
FspBI CTAG 2 cut(s) 123, 273
GluI GCNGC 2 cut(s) 709, 712
GsaI CCCAGC 2 cut(s) 498, 667
HaeIII GGCC 4 cut(s) 165, 594, 674, 711
HapII CCGG 2 cut(s) 90, 705
HgaI GACGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 2 cut(s) 147, 510
HinfI GANTC 3 cut(s) 552, 685, 730
HpaII CCGG 2 cut(s) 90, 705
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 4 cut(s) 109, 397, 443, 569
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 3 cut(s) 162, 272, 318
HpyCH4III ACNGT 2 cut(s) 97, 239
HpyCH4IV ACGT 2 cut(s) 302, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 302, 423
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 2 cut(s) 147, 510
Kzo9I GATC 3 cut(s) 140, 361, 399
LmnI GCTCC 1 cut(s) 491
LweI GCATC 1 cut(s) 649
MaeI CTAG 2 cut(s) 123, 273
MaeII ACGT 2 cut(s) 302, 423
MaeIII GTNAC 1 cut(s) 381
MalI GATC 3 cut(s) 142, 363, 401
MbiI CCGCTC 1 cut(s) 714
MboI GATC 3 cut(s) 140, 361, 399
MboII GAAGA 3 cut(s) 199, 204, 552
MhlI GDGCHC 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 3 cut(s) 251, 478, 546
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 1 cut(s) 554
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 3 cut(s) 293, 410, 620
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 2 cut(s) 90, 705
Mva1269I GAATGC 2 cut(s) 104, 357
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 3 cut(s) 140, 361, 399
NlaIII CATG 2 cut(s) 147, 510
NlaIV GGNNCC 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 381
NotI GCGGCCGC 1 cut(s) 709
NspI RCATGY 1 cut(s) 510
PaeI GCATGC 1 cut(s) 510
PctI GAATGC 2 cut(s) 104, 357
PfeI GAWTC 2 cut(s) 552, 730
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 2 cut(s) 710, 713
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PspFI CCCAGC 2 cut(s) 494, 663
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 163, 592
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 293, 410, 620
SatI GCNGC 2 cut(s) 709, 712
Sau3AI GATC 3 cut(s) 140, 361, 399
Sau96I GGNCC 2 cut(s) 163, 592
SchI GAGTC 1 cut(s) 679
SduI GDGCHC 1 cut(s) 196
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 2 cut(s) 357, 740
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
SpeI ACTAGT 1 cut(s) 272
SphI GCATGC 1 cut(s) 510
Sse9I AATT 3 cut(s) 251, 478, 546
SsiI CCGC 2 cut(s) 708, 712
SspMI CTAG 2 cut(s) 123, 273
StyI CCWWGG 2 cut(s) 613, 669
TaaI ACNGT 2 cut(s) 97, 239
TaiI ACGT 2 cut(s) 305, 426
TaqI TCGA 2 cut(s) 602, 683
TasI AATT 3 cut(s) 251, 478, 546
TauI GCSGC 2 cut(s) 711, 714
TfiI GAWTC 2 cut(s) 552, 730
Tru1I TTAA 3 cut(s) 293, 410, 620
Tru9I TTAA 3 cut(s) 293, 410, 620
TseFI GTSAC 1 cut(s) 381
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 153
Van91I CCANNNNNTGG 1 cut(s) 670
XagI CCTNNNNNAGG 1 cut(s) 629
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 123, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.