Rh3DG056100

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001834
Physical Location & Seq
Forward (+)
3812652 .. 3813558
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG056100.1

Sequence Viewer

Length: 717 bp
ATGACTACTGCAAGACAAGACGAAAACGTATCAGCCACCCAAAAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTCCTACCTACCGGCACCGTTCTCGCATTTGAGACCCTCATTCCTAGTTTCTCCAACAACGGAGCATGCCATCCGGCCAACAAGGGCCTTTCCTCATCCATCATTCTAATTTGTGCTCTCATCTGCTTCTTCTCCTCCTTTACTGATAGCTTCATTGACAGTACCGATGGAAAATTCTATTATGGGATCGCCACTAGCACAGGCATACGCATCTTAAATCCTAGAACAAAAAAGATCACTTATGAGGAAAGAAAGCGCTTGGAAAAGTATAAAATCACGGGTAGAGATTATTTCCATGCCTTTTTGGCAGTAACTGTGTTCTTGGTCTTTGCTCTTACCGACCTCAATGTGAAAAATTGTTTCTTTCCTGATGCGGGAGATGATCTCAATCAAATCATTATCAACTTGCCACTAGGAGCTGGGATTTTCGCATCCTTCTTATTCACTATTTTTCCAACTACTCGAAGAGGGATAGGATACACGCAGCCCCGGCCGAATAAGGAGGAAAAAGACGGGAACCAGACCTCGGCCATCACGACCGCTTCCAGGGAGTCGGAGGCGGAAATGGTGGGTGTGGTCGTAGAAGGAGCAGTTCAGTCTGAGGCTCAGGTCTCCGCGACAGCCTCAACCCCGCCGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

238

Amino Acids

25.85

Weight (kDa)

6.73

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 19 - 185 1.3e-59 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 2 cut(s) 692, 712
AciI CCGC 6 cut(s) 449, 615, 635, 690, 707, 710
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 3 cut(s) 150, 566, 603
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 3 cut(s) 449, 601, 621
AjnI CCWGG 1 cut(s) 620
AluBI AGCT 2 cut(s) 225, 494
AluI AGCT 2 cut(s) 225, 494
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 101, 691
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 332
AoxI GGCC 4 cut(s) 150, 160, 566, 603
ApeKI GCWGC 2 cut(s) 59, 559
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 565
BanI GGYRCC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 71, 571
BccI CCATC 4 cut(s) 153, 182, 236, 614
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 1 cut(s) 622
BciVI GTATCC 1 cut(s) 545
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 101, 691
BfaI CTAG 4 cut(s) 120, 270, 297, 488
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 3 cut(s) 60, 560, 710
BlsI GCNGC 3 cut(s) 61, 561, 711
Bme1390I CCNGG 2 cut(s) 565, 622
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 91, 593
BmrFI CCNGG 2 cut(s) 565, 622
BmsI GCATC 3 cut(s) 294, 436, 515
BplI GAGNNNNNCTC 2 cut(s) 444, 476
Bpu10I CCTNAGC 1 cut(s) 681
BpuMI CCSGG 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 101, 691
BsaJI CCNNGG 3 cut(s) 563, 600, 621
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 601, 621
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 622
BseDI CCNNGG 3 cut(s) 563, 600, 621
BseGI GGATG 3 cut(s) 145, 170, 506
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 449, 601, 621
BseMII CTCAG 2 cut(s) 666, 695
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 199
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 71, 571
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 692, 712
Bsh1285I CGRYCG 2 cut(s) 569, 615
BshFI GGCC 4 cut(s) 152, 162, 568, 605
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 2 cut(s) 569, 615
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 3 cut(s) 87, 149, 565
BslI CCNNNNNNNGG 3 cut(s) 449, 601, 621
BsmAI GTCTC 2 cut(s) 101, 691
BsnI GGCC 4 cut(s) 152, 162, 568, 605
Bso31I GGTCTC 2 cut(s) 101, 691
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 261, 309, 457
BspACI CCGC 6 cut(s) 449, 615, 635, 690, 707, 710
BspANI GGCC 4 cut(s) 152, 162, 568, 605
BspCNI CTCAG 2 cut(s) 667, 694
BspFNI CGCG 2 cut(s) 692, 712
BspLI GGNNCC 2 cut(s) 91, 593
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 2 cut(s) 101, 691
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 563, 600, 621
BssMI GATC 3 cut(s) 261, 309, 457
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 3 cut(s) 94, 236, 391
Bst6I CTCTTC 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 675, 681
BstF5I GGATG 3 cut(s) 145, 170, 506
BstFNI CGCG 2 cut(s) 692, 712
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 264, 312, 460
BstMAI GTCTC 2 cut(s) 101, 691
BstMBI GATC 3 cut(s) 261, 309, 457
BstMCI CGRYCG 2 cut(s) 569, 615
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
BstNI CCWGG 1 cut(s) 622
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 563, 620
BstUI CGCG 2 cut(s) 692, 712
BstV1I GCAGC 2 cut(s) 71, 571
BstZI CGGCCG 1 cut(s) 566
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 4 cut(s) 152, 162, 568, 605
BtsCI GGATG 3 cut(s) 145, 170, 506
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 141, 371
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 675, 681
DpnI GATC 3 cut(s) 263, 311, 459
DpnII GATC 3 cut(s) 261, 309, 457
EaeI YGGCCR 3 cut(s) 150, 566, 603
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
EciI GGCGGA 1 cut(s) 650
EclXI CGGCCG 1 cut(s) 566
Eco31I GGTCTC 2 cut(s) 101, 691
Eco47III AGCGCT 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 620
FaeI CATG 2 cut(s) 144, 374
FaiI YATR 7 cut(s) 50, 142, 258, 281, 318, 345, 372
FatI CATG 2 cut(s) 140, 370
FauI CCCGC 2 cut(s) 442, 714
Fnu4HI GCNGC 3 cut(s) 60, 560, 710
FokI GGATG 3 cut(s) 132, 157, 493
Fsp4HI GCNGC 3 cut(s) 60, 560, 710
FspBI CTAG 4 cut(s) 120, 270, 297, 488
GlaI GCGC 1 cut(s) 332
GluI GCNGC 3 cut(s) 60, 560, 710
GsaI CCCAGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 4 cut(s) 152, 162, 568, 605
HapII CCGG 3 cut(s) 87, 149, 565
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 144, 374
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 1 cut(s) 626
HpaII CCGG 3 cut(s) 87, 149, 565
Hpy188I TCNGA 2 cut(s) 631, 676
Hpy188III TCNNGA 2 cut(s) 443, 610
HpyAV CCTTC 2 cut(s) 520, 653
HpyCH4III ACNGT 3 cut(s) 94, 236, 391
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 11, 59
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
HpyF3I CTNAG 2 cut(s) 675, 681
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 144, 374
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 261, 309, 457
LmnI GCTCC 3 cut(s) 137, 491, 662
Lsp1109I GCAGC 2 cut(s) 71, 571
LweI GCATC 3 cut(s) 294, 436, 515
MaeI CTAG 4 cut(s) 120, 270, 297, 488
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 385
MalI GATC 3 cut(s) 263, 311, 459
MboI GATC 3 cut(s) 261, 309, 457
MboII GAAGA 2 cut(s) 196, 552
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 3 cut(s) 183, 248, 430
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 3 cut(s) 153, 554, 609
MseI TTAA 1 cut(s) 290
MspI CCGG 3 cut(s) 87, 149, 565
MspR9I CCNGG 2 cut(s) 565, 622
MvaI CCWGG 1 cut(s) 622
MvnI CGCG 2 cut(s) 692, 712
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
NciI CCSGG 1 cut(s) 565
NdeII GATC 3 cut(s) 261, 309, 457
NlaIII CATG 2 cut(s) 144, 374
NlaIV GGNNCC 2 cut(s) 91, 593
NmeAIII GCCGAG 1 cut(s) 581
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PkrI GCNGC 3 cut(s) 61, 561, 711
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 2 cut(s) 91, 593
PspPI GGNCC 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 3 cut(s) 60, 560, 710
Sau3AI GATC 3 cut(s) 261, 309, 457
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 2 cut(s) 565, 622
SduI GDGCHC 1 cut(s) 193
SetI ASST 8 cut(s) 30, 78, 85, 227, 420, 496, 602, 687
SfaNI GCATC 3 cut(s) 294, 436, 515
SphI GCATGC 1 cut(s) 144
Sse9I AATT 3 cut(s) 183, 248, 430
SsiI CCGC 6 cut(s) 449, 615, 635, 690, 707, 710
SspMI CTAG 4 cut(s) 120, 270, 297, 488
StyD4I CCNGG 2 cut(s) 563, 620
TaaI ACNGT 3 cut(s) 94, 236, 391
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 538
TasI AATT 3 cut(s) 183, 248, 430
TauI GCSGC 1 cut(s) 712
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 61
TseI GCWGC 2 cut(s) 59, 559
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 144
XspI CTAG 4 cut(s) 120, 270, 297, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.