FvH4_6g05181

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001834
Physical Location & Seq
Forward (+)
2910115 .. 2910959
845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05181.t1

Sequence Viewer

Length: 645 bp
ATGGCTGCTGAAATATCATCTATCGATCAACCACTCACGCCACCACCTCCTCCTGCAACGGTAAAGCGAGGCTCAAACCACCCTGTTCACGACACCCTAGCCATTGCAGCCAATCTAGCTAACCTCCTCCCTACAGGCACCGTCCTTGCATTTCAAACCCTAACTCCGAGTTTCTCCAACAACGGATGTTGCCAACAACTATCCAATAAGTTCCTTACTTCATCTGTCATAATAATTTGTGCTGTCTTCTGTTTCTTATCTTCATTCACTGACAGCTTCATCGACAATGACAATGGTGGAAAACTCTATTATGGAATCGCCACTTTCAAAGGCATGTACATCTTTAACAACAATGACATGGAGGAAGATATGAATAAGTACCTGAAGAAGTATAGAATAAAGTTCATAGATTTTGTTCATGCGTTCATCTCACTACTTGTGTTCCTAATCTTTGCTCTTACCAACTCCAACGTGCAAAGTTGTTTCTTTTCTGGAGTGGGAATAAATATCAGTGAACTTGCAATGAAATTGCCACTAGGTGCAGGGGTTTTGTCAACCTTCTTGTTCACCATATTTCCAACTACTCGAAGAGGAATTGGATACGCAGACATCATCTCCACCCAAAGGACTGTCAATGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

215

Amino Acids

23.48

Weight (kDa)

6.8

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 36 - 201 5.3e-60 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 404
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 2 cut(s) 338, 380
AfiI CCNNNNNNNGG 1 cut(s) 624
AgsI TTSAA 2 cut(s) 155, 328
AluBI AGCT 2 cut(s) 119, 276
AluI AGCT 2 cut(s) 119, 276
ApeKI GCWGC 2 cut(s) 5, 107
AsuHPI GGTGA 1 cut(s) 559
BanI GGYRCC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 119
BciVI GTATCC 1 cut(s) 593
BfaI CTAG 3 cut(s) 98, 116, 536
BfmI CTRYAG 1 cut(s) 132
BfuI GTATCC 1 cut(s) 593
BisI GCNGC 2 cut(s) 6, 108
BlsI GCNGC 2 cut(s) 7, 109
BmiI GGNNCC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 24
BsaXI ACNNNNNCTCC 4 cut(s) 148, 178, 599, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 624
Bse3DI GCAATG 2 cut(s) 102, 528
BseCI ATCGAT 1 cut(s) 24
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 624
BseMI GCAATG 2 cut(s) 102, 528
BseRI GAGGAG 2 cut(s) 39, 116
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 561
BshNI GGYRCC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 624
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 2 cut(s) 102, 528
BsrGI TGTACA 1 cut(s) 336
BssMI GATC 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 61, 142, 631
Bst6I CTCTTC 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 336
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstNSI RCATGY 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 24
BsuI GTATCC 1 cut(s) 593
BsuTUI ATCGAT 1 cut(s) 24
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 267, 517
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 2 cut(s) 337, 379
CviAII CATG 3 cut(s) 334, 358, 419
CviJI RGCY 6 cut(s) 5, 72, 101, 110, 119, 276
CviKI_1 RGCY 6 cut(s) 5, 72, 101, 110, 119, 276
CviQI GTAC 2 cut(s) 337, 379
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 539
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 404
FaeI CATG 3 cut(s) 337, 361, 422
FatI CATG 3 cut(s) 333, 357, 418
Fnu4HI GCNGC 2 cut(s) 6, 108
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 6, 108
FspBI CTAG 3 cut(s) 98, 116, 536
GluI GCNGC 2 cut(s) 6, 108
GsuI CTGGAG 1 cut(s) 513
Hin1II CATG 3 cut(s) 337, 361, 422
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 1 cut(s) 315
HphI GGTGA 1 cut(s) 559
Hpy166II GTNNAC 4 cut(s) 88, 515, 555, 567
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 89, 492
Hpy8I GTNNAC 4 cut(s) 88, 515, 555, 567
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 3 cut(s) 61, 142, 631
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 6 cut(s) 56, 107, 149, 475, 521, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 3 cut(s) 337, 361, 422
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 66, 96, 120, 395, 477, 528
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 3 cut(s) 98, 116, 536
MaeII ACGT 1 cut(s) 471
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 5 cut(s) 238, 252, 377, 397, 600
MluCI AATT 3 cut(s) 234, 527, 594
MmeI TCCRAC 3 cut(s) 201, 492, 602
MnlI CCTC 7 cut(s) 57, 60, 62, 134, 137, 355, 584
MseI TTAA 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NdeII GATC 1 cut(s) 25
NlaIII CATG 3 cut(s) 337, 361, 422
NlaIV GGNNCC 1 cut(s) 139
NspI RCATGY 1 cut(s) 337
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 2 cut(s) 7, 109
PspN4I GGNNCC 1 cut(s) 139
RsaI GTAC 2 cut(s) 338, 380
RsaNI GTAC 2 cut(s) 337, 379
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 6, 108
Sau3AI GATC 1 cut(s) 25
SetI ASST 8 cut(s) 49, 121, 126, 278, 384, 474, 541, 560
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 234, 527, 594
SspMI CTAG 3 cut(s) 98, 116, 536
TaaI ACNGT 3 cut(s) 61, 142, 631
TaiI ACGT 1 cut(s) 474
TaqI TCGA 3 cut(s) 24, 282, 586
TasI AATT 3 cut(s) 234, 527, 594
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 274, 517
TseI GCWGC 2 cut(s) 5, 107
TspDTI ATGAA 8 cut(s) 210, 252, 268, 386, 394, 407, 415, 539
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 2 cut(s) 274, 517
XceI RCATGY 1 cut(s) 337
XspI CTAG 3 cut(s) 98, 116, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.