Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0001834

Physical Location & Seq

Genomic Coordinates Forward (+)

84319 .. 84879

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgactatcgaaacaaaaaacgaagatcacataacacctattcaaaagaccatagccagtgcagctaatcttgctaacctcctacctaccggcaccgtcctggcatttgagaccctcattcctagtttctctaacaatggagcatgccatcctgccaataagggcctttcaatatccatcattataacctgtgccattatctgctgcttctgctcctttactgatagcttcatagacagaactgatggaaaattctactatggtatcatcactcgtgaaggcatatacatcttaaatcctagagcaaaggagcttacgattgacgaaaaaaagcgcttgagcaagtataaaataaagcctatggattattttcacgcttttttgtcactaactgtgttcttgatctttgctcttaccgacctcaacgtgaaaaattgtttctttccggacgcgggagatgatctcaagcaatggcggatccaggattggaaccttggacgggctggatttcttaaacaaaaaaaaaaaaaaattgaatttcacagcctacagcctacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

186

Amino Acids

21.08

Weight (kDa)

8.86

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27370
fragaria_vesca	FvH4_6g05181 FvH4_6g05200 FvH4_6g05210
malus_domestica	MD04G1211300.v1.1 MD12G1225200.v1.1
prunus_persica	Prupe.6G331700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453861 RchiOBHm_Chr3g0453871 RchiOBHm_Chr3g0453891 RchiOBHm_Chr3g0453901 RchiOBHm_Chr3g0453911
rosa_laevigata	RLG00000025494 RLG00000025495 RLG00000025497
rosa_multiflora	Rmu_sc0003556.1_g000017 Rmu_sc0003556.1_g000021 Rmu_sc0003556.1_g000024 Rmu_sc0003556.1_g000025
rosa_roxburghii	Rroxscaffold_6G00430650 Rroxscaffold_6G00430680 Rroxscaffold_6G00430690 Rroxscaffold_6G00430710 Rroxscaffold_6G00430720 Rroxscaffold_6G00430730
rosa_rugosa	Rorug02G0651400 Rorug02G0651600 Rorug02G0651700.1 Rorug02G0651800
rosa_samantha	Rh3AG054100 Rh3AG054300 Rh3AG054400 Rh3BG055500 Rh3BG055700 Rh3BG056000 Rh3CG054500 Rh3CG054800 Rh3CG055000 Rh3CG055100 Rh3CG055200 Rh3DG055700 Rh3DG056100 Rh3DG056200 Rh3DG056300 Rh3DG056500
rosa_wichuraiana	Rw3G004160 Rw3G004170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	1 cut(s)	452
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	2 cut(s)	452, 475
AclWI	GGATC	2 cut(s)	472, 485
AcsI	RAATTY	2 cut(s)	251, 536
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	452, 499
AgsI	TTSAA	3 cut(s)	44, 171, 536
AjnI	CCWGG	2 cut(s)	99, 480
AluBI	AGCT	3 cut(s)	65, 228, 313
AluI	AGCT	3 cut(s)	65, 228, 313
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	472, 485
Aor13HI	TCCGGA	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	62, 204
ApoI	RAATTY	2 cut(s)	251, 536
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BamHI	GGATCC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	74, 191
BccI	CCATC	3 cut(s)	156, 185, 239
BciT130I	CCWGG	2 cut(s)	101, 482
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	123, 300
BfmI	CTRYAG	1 cut(s)	548
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	2 cut(s)	63, 205
BlsI	GCNGC	2 cut(s)	64, 206
Bme1390I	CCNGG	2 cut(s)	101, 482
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	3 cut(s)	94, 479, 491
BmrFI	CCNGG	2 cut(s)	101, 482
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
BpuEI	CTTGAG	2 cut(s)	358, 449
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	493
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 499
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	101, 482
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	452, 499
BseMI	GCAATG	1 cut(s)	476
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	74, 191
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	90, 446
BslI	CCNNNNNNNGG	2 cut(s)	452, 499
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	25, 402, 460, 477
BspACI	CCGC	2 cut(s)	452, 475
BspANI	GGCC	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	94, 479, 491
BspPI	GGATC	2 cut(s)	472, 485
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	4 cut(s)	25, 402, 460, 477
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	101, 482
Bst4CI	ACNGT	2 cut(s)	97, 394
BstC8I	GCNNGC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	4 cut(s)	28, 405, 463, 480
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	25, 402, 460, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 210
BstNI	CCWGG	2 cut(s)	101, 482
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	99, 480
BstSFI	CTRYAG	1 cut(s)	548
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	74, 191
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	458
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	9 cut(s)	56, 65, 165, 228, 313, 358, 503, 546, 553
CviKI_1	RGCY	9 cut(s)	56, 65, 165, 228, 313, 358, 503, 546, 553
DpnI	GATC	4 cut(s)	27, 404, 462, 479
DpnII	GATC	4 cut(s)	25, 402, 460, 477
EciI	GGCGGA	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	104
Eco47III	AGCGCT	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	99, 480
EcoT14I	CCWWGG	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	1 cut(s)	147
FatI	CATG	1 cut(s)	143
FauI	CCCGC	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	63, 205
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	63, 205
FspBI	CTAG	2 cut(s)	123, 300
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	2 cut(s)	63, 205
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	90, 446
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HpaII	CCGG	2 cut(s)	90, 446
Hpy188III	TCNNGA	3 cut(s)	275, 400, 446
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	97, 394
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 210
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	25, 402, 460, 477
LmnI	GCTCC	3 cut(s)	140, 218, 310
Lsp1109I	GCAGC	2 cut(s)	74, 191
MaeI	CTAG	2 cut(s)	123, 300
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	4 cut(s)	27, 404, 462, 479
MboI	GATC	4 cut(s)	25, 402, 460, 477
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	4 cut(s)	251, 433, 531, 536
MnlI	CCTC	3 cut(s)	89, 125, 431
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	2 cut(s)	293, 513
MspI	CCGG	2 cut(s)	90, 446
MspR9I	CCNGG	2 cut(s)	101, 482
MvaI	CCWGG	2 cut(s)	101, 482
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 210
NdeII	GATC	4 cut(s)	25, 402, 460, 477
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	3 cut(s)	94, 479, 491
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	2 cut(s)	64, 206
PsiI	TTATAA	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	99, 480
PspGI	CCWGG	2 cut(s)	99, 480
PspN4I	GGNNCC	3 cut(s)	94, 479, 491
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	293, 513
SatI	GCNGC	2 cut(s)	63, 205
Sau3AI	GATC	4 cut(s)	25, 402, 460, 477
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	101, 482
SfcI	CTRYAG	1 cut(s)	548
SmlI	CTYRAG	2 cut(s)	337, 464
SmoI	CTYRAG	2 cut(s)	337, 464
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	4 cut(s)	251, 433, 531, 536
SsiI	CCGC	2 cut(s)	452, 475
SspMI	CTAG	2 cut(s)	123, 300
StyD4I	CCNGG	2 cut(s)	99, 480
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	97, 394
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	251, 433, 531, 536
Tru1I	TTAA	2 cut(s)	293, 513
Tru9I	TTAA	2 cut(s)	293, 513
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	2 cut(s)	62, 204
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	2 cut(s)	251, 536
XceI	RCATGY	1 cut(s)	147
XspI	CTAG	2 cut(s)	123, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.