Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0001834

Physical Location & Seq

Genomic Coordinates Forward (+)

66403 .. 67125

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgactactgcaacacaagacgaaaacgtatcagccacccaaaagaccatagccagtgcagccaatcttgctaacctcctaccgaccggcaccgttctcgcatttgagaccctcattcctagtttctccaacaacggagcatgccatcctgccaacaagggcctttcctcatccatcattctaatttgtgctctcatctgcttcttctcctcctttactgatagcttcattgacagtaccgatggaaaattctattatgggatcgccactagcacaggcatacgcatcttaaatcctagaacaaaaaagatcacttatgaggaaagaaagcgcttggaaaagtataaaatcacgggtagagattatttccatgcctttttggcactaactgtgttcttggtctttgctcttaccgacctgaatgtgaaaaattgtttcttttctgatgcgggagatgatctcaatcaaatcattatcaacttgccactaggagctgggattttcgcatccttcttattcactatttttccaactactcgaagagggataggatacacgcagccccggccgaataaggaggaaaaagggaaccagacctcggccatcacgaccgcttccaaggggtcggaggcggaaatggtgggtgtggttgtagaaggagcagttcagtctgaagctcaggtctccgcgacagcctcaaccccaccgcgcgcgatagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

240

Amino Acids

25.88

Weight (kDa)

6.73

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27370
fragaria_vesca	FvH4_6g05181 FvH4_6g05200 FvH4_6g05210
malus_domestica	MD04G1211300.v1.1 MD12G1225200.v1.1
prunus_persica	Prupe.6G331700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453861 RchiOBHm_Chr3g0453871 RchiOBHm_Chr3g0453891 RchiOBHm_Chr3g0453901 RchiOBHm_Chr3g0453911
rosa_laevigata	RLG00000025494 RLG00000025495 RLG00000025497
rosa_multiflora	Rmu_sc0003556.1_g000017 Rmu_sc0003556.1_g000021 Rmu_sc0003556.1_g000024 Rmu_sc0003556.1_g000025
rosa_roxburghii	Rroxscaffold_6G00430650 Rroxscaffold_6G00430680 Rroxscaffold_6G00430690 Rroxscaffold_6G00430710 Rroxscaffold_6G00430720 Rroxscaffold_6G00430730
rosa_rugosa	Rorug02G0651400 Rorug02G0651600 Rorug02G0651700.1 Rorug02G0651800
rosa_samantha	Rh3AG054100 Rh3AG054300 Rh3AG054400 Rh3BG055500 Rh3BG055700 Rh3BG056000 Rh3CG054500 Rh3CG054800 Rh3CG055000 Rh3CG055100 Rh3CG055200 Rh3DG055700 Rh3DG056100 Rh3DG056200 Rh3DG056300 Rh3DG056500
rosa_wichuraiana	Rw3G004160 Rw3G004170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	4 cut(s)	689, 709, 711, 713
AciI	CCGC	5 cut(s)	449, 612, 632, 687, 707
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	2 cut(s)	566, 600
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	1 cut(s)	238
AfeI	AGCGCT	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	225, 494, 677
AluI	AGCT	3 cut(s)	225, 494, 677
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	101, 688
AlwI	GGATC	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	332
AoxI	GGCC	3 cut(s)	160, 566, 600
ApeKI	GCWGC	2 cut(s)	59, 559
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	333, 711, 713
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	71, 571
BccI	CCATC	4 cut(s)	153, 182, 236, 611
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciVI	GTATCC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	101, 688
BfaI	CTAG	4 cut(s)	120, 270, 297, 488
BfoI	RGCGCY	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	545
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	60, 560
BlsI	GCNGC	2 cut(s)	61, 561
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	91, 590
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	3 cut(s)	294, 436, 515
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
Bpu10I	CCTNAGC	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	2 cut(s)	101, 688
BsaJI	CCNNGG	3 cut(s)	563, 597, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	563, 597, 618
BseGI	GGATG	3 cut(s)	145, 170, 506
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	1 cut(s)	54
BsePI	GCGCGC	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	71, 571
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	4 cut(s)	689, 709, 711, 713
Bsh1285I	CGRYCG	3 cut(s)	87, 569, 612
BshFI	GGCC	3 cut(s)	162, 568, 602
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	3 cut(s)	87, 569, 612
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	87, 565
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	2 cut(s)	101, 688
BsnI	GGCC	3 cut(s)	162, 568, 602
Bso31I	GGTCTC	2 cut(s)	101, 688
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	261, 309, 457
BspACI	CCGC	5 cut(s)	449, 612, 632, 687, 707
BspANI	GGCC	3 cut(s)	162, 568, 602
BspCNI	CTCAG	1 cut(s)	691
BspFNI	CGCG	4 cut(s)	689, 709, 711, 713
BspLI	GGNNCC	2 cut(s)	91, 590
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	2 cut(s)	101, 688
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	563, 597, 618
BssHII	GCGCGC	1 cut(s)	709
BssMI	GATC	3 cut(s)	261, 309, 457
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	94, 236, 391
Bst6I	CTCTTC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	142, 711
BstDEI	CTNAG	1 cut(s)	678
BstF5I	GGATG	3 cut(s)	145, 170, 506
BstFNI	CGCG	4 cut(s)	689, 709, 711, 713
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	3 cut(s)	333, 711, 713
BstKTI	GATC	3 cut(s)	264, 312, 460
BstMAI	GTCTC	2 cut(s)	101, 688
BstMBI	GATC	3 cut(s)	261, 309, 457
BstMCI	CGRYCG	3 cut(s)	87, 569, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 68, 380, 565
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	563
BstUI	CGCG	4 cut(s)	689, 709, 711, 713
BstV1I	GCAGC	2 cut(s)	71, 571
BstZI	CGGCCG	1 cut(s)	566
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	3 cut(s)	162, 568, 602
BtsCI	GGATG	3 cut(s)	145, 170, 506
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	142, 711
CfoI	GCGC	3 cut(s)	333, 711, 713
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	141, 371
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	678
DpnI	GATC	3 cut(s)	263, 311, 459
DpnII	GATC	3 cut(s)	261, 309, 457
EaeI	YGGCCR	2 cut(s)	566, 600
EagI	CGGCCG	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
EciI	GGCGGA	1 cut(s)	647
EclXI	CGGCCG	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	618
Eco31I	GGTCTC	2 cut(s)	101, 688
Eco47III	AGCGCT	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	2 cut(s)	144, 374
FaiI	YATR	7 cut(s)	50, 142, 258, 281, 318, 345, 372
FatI	CATG	2 cut(s)	140, 370
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	60, 560
FokI	GGATG	3 cut(s)	132, 157, 493
Fsp4HI	GCNGC	2 cut(s)	60, 560
FspBI	CTAG	4 cut(s)	120, 270, 297, 488
GlaI	GCGC	3 cut(s)	332, 710, 712
GluI	GCNGC	2 cut(s)	60, 560
GsaI	CCCAGC	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	3 cut(s)	162, 568, 602
HapII	CCGG	2 cut(s)	87, 565
HhaI	GCGC	3 cut(s)	333, 711, 713
Hin1II	CATG	2 cut(s)	144, 374
Hin6I	GCGC	3 cut(s)	331, 709, 711
HinP1I	GCGC	3 cut(s)	331, 709, 711
HpaII	CCGG	2 cut(s)	87, 565
Hpy188I	TCNGA	3 cut(s)	445, 628, 673
Hpy188III	TCNNGA	1 cut(s)	607
HpyAV	CCTTC	2 cut(s)	520, 650
HpyCH4III	ACNGT	3 cut(s)	94, 236, 391
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	11, 59
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 68, 380, 565
HpyF3I	CTNAG	1 cut(s)	678
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	144, 374
HspAI	GCGC	3 cut(s)	331, 709, 711
Kzo9I	GATC	3 cut(s)	261, 309, 457
LmnI	GCTCC	3 cut(s)	137, 491, 659
LpnPI	CCDG	9 cut(s)	67, 100, 162, 261, 431, 480, 578, 605, 665
Lsp1109I	GCAGC	2 cut(s)	71, 571
LweI	GCATC	3 cut(s)	294, 436, 515
MaeI	CTAG	4 cut(s)	120, 270, 297, 488
MaeII	ACGT	1 cut(s)	27
MalI	GATC	3 cut(s)	263, 311, 459
MauBI	CGCGCGCG	1 cut(s)	709
MboI	GATC	3 cut(s)	261, 309, 457
MboII	GAAGA	2 cut(s)	196, 552
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	183, 248, 430
MmeI	TCCRAC	3 cut(s)	153, 554, 606
MseI	TTAA	1 cut(s)	290
MspI	CCGG	2 cut(s)	87, 565
MspR9I	CCNGG	1 cut(s)	565
MvnI	CGCG	4 cut(s)	689, 709, 711, 713
MwoI	GCNNNNNNNGC	4 cut(s)	59, 68, 380, 565
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	3 cut(s)	261, 309, 457
NlaIII	CATG	2 cut(s)	144, 374
NlaIV	GGNNCC	2 cut(s)	91, 590
NmeAIII	GCCGAG	1 cut(s)	578
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PauI	GCGCGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	61, 561
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	91, 590
PspPI	GGNCC	1 cut(s)	160
PteI	GCGCGC	1 cut(s)	709
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	60, 560
Sau3AI	GATC	3 cut(s)	261, 309, 457
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	8 cut(s)	30, 78, 227, 420, 496, 599, 679, 684
SfaNI	GCATC	3 cut(s)	294, 436, 515
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	3 cut(s)	183, 248, 430
SsiI	CCGC	5 cut(s)	449, 612, 632, 687, 707
SspMI	CTAG	4 cut(s)	120, 270, 297, 488
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	94, 236, 391
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	538
TasI	AATT	3 cut(s)	183, 248, 430
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	2 cut(s)	59, 559
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	4 cut(s)	120, 270, 297, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.