Rh3DG055700

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001834
Physical Location & Seq
Forward (+)
3783831 .. 3800073
16243 bp
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UTR
Exon/CDS
Intron
Rh3DG055700.1

Sequence Viewer

Length: 399 bp
ATGTACATCTTTAACTACAATAACATGGAGGAGGATATGAATAAGTACTTGGAAAAGTATAGAATAAAGTTCATAGATTTTGTTCATGCCTTCATCTCACTAATGTTCTTCCCGATCTTTGCTCTTACCAACTCCAACTCCAACGTACAAAGTTGTTTCTTTTCTGGAGGGGGAATAAATATCAGTGAACTCGCAATGAACTTGCCACTAGGTGCAGGGGTTTTATCAACCTTGTTGTTCACCATCTTCCCAACTACTCGAAGAGGAATCGGATGCGCAGACATGGGGCCCAGATGCGATTCTGAGCCTCGGGATGATCAAAACGTGTATTCTCTACGACTGCGGTTCCATCGATTACGATCTCTTTGTGGCCTCGATGCTTGTGCTCAGTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

132

Amino Acids

15.11

Weight (kDa)

6.7

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 8 - 92 1.6e-22 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 277
AciI CCGC 1 cut(s) 343
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 3 cut(s) 5, 47, 147
AflIII ACRYGT 1 cut(s) 324
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
Alw21I GWGCWC 1 cut(s) 388
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 287, 370
ApaI GGGCCC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 287, 288
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 2 cut(s) 251, 357
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BclI TGATCA 1 cut(s) 316
BfaI CTAG 2 cut(s) 209, 397
BmcAI AGTACT 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 287, 288
BmiI GGNNCC 3 cut(s) 288, 289, 347
BmsI GCATC 3 cut(s) 263, 284, 367
BpmI CTGGAG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 278, 319
BseJI GATNNNNATC 1 cut(s) 358
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 2 cut(s) 289, 372
BshVI ATCGAT 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 309
BsnI GGCC 2 cut(s) 289, 372
BsoBI CYCGRG 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 291, 388
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 114, 316, 359
BspACI CCGC 1 cut(s) 343
BspANI GGCC 2 cut(s) 289, 372
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 352
BspLI GGNNCC 3 cut(s) 288, 289, 347
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 3 cut(s) 114, 316, 359
Bst6I CTCTTC 1 cut(s) 256
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 303, 387
BstF5I GGATG 2 cut(s) 278, 319
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 3 cut(s) 117, 319, 362
BstMBI GATC 3 cut(s) 114, 316, 359
BstSLI GKGCMC 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 352
BsuRI GGCC 2 cut(s) 289, 372
BsuTUI ATCGAT 1 cut(s) 352
BtsCI GGATG 2 cut(s) 278, 319
BtsIMutI CAGTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 287, 288
ClaI ATCGAT 1 cut(s) 352
Csp6I GTAC 3 cut(s) 4, 46, 146
CviAII CATG 3 cut(s) 25, 86, 283
CviJI RGCY 3 cut(s) 289, 307, 372
CviKI_1 RGCY 3 cut(s) 289, 307, 372
CviQI GTAC 3 cut(s) 4, 46, 146
DdeI CTNAG 2 cut(s) 303, 387
DpnI GATC 3 cut(s) 116, 318, 361
DpnII GATC 3 cut(s) 114, 316, 359
DraIII CACNNNGTG 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 3 cut(s) 28, 89, 286
FaiI YATR 6 cut(s) 26, 38, 60, 74, 87, 284
FatI CATG 3 cut(s) 24, 85, 282
FbaI TGATCA 1 cut(s) 316
FokI GGATG 2 cut(s) 285, 326
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 2 cut(s) 209, 397
FspI TGCGCA 1 cut(s) 277
GlaI GCGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 289, 372
HhaI GCGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 28, 89, 286
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 2 cut(s) 267, 299
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 2 cut(s) 188, 240
Hpy188I TCNGA 2 cut(s) 272, 304
Hpy188III TCNNGA 3 cut(s) 112, 165, 311
Hpy8I GTNNAC 2 cut(s) 188, 240
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 144, 324
HpyCH4V TGCA 1 cut(s) 215
HpyF3I CTNAG 2 cut(s) 303, 387
HpySE526I ACGT 2 cut(s) 144, 324
Hsp92II CATG 3 cut(s) 28, 89, 286
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 3 cut(s) 114, 316, 359
LpnPI CCDG 3 cut(s) 150, 201, 304
LweI GCATC 3 cut(s) 263, 284, 367
MaeI CTAG 2 cut(s) 209, 397
MaeII ACGT 2 cut(s) 144, 324
MalI GATC 3 cut(s) 116, 318, 361
MboI GATC 3 cut(s) 114, 316, 359
MboII GAAGA 4 cut(s) 100, 238, 273, 385
MhlI GDGCHC 2 cut(s) 291, 388
MmeI TCCRAC 2 cut(s) 159, 165
MnlI CCTC 6 cut(s) 22, 25, 161, 257, 318, 383
MseI TTAA 1 cut(s) 12
NdeII GATC 3 cut(s) 114, 316, 359
NlaIII CATG 3 cut(s) 28, 89, 286
NlaIV GGNNCC 3 cut(s) 288, 289, 347
NsbI TGCGCA 1 cut(s) 277
PfeI GAWTC 2 cut(s) 267, 299
PspN4I GGNNCC 3 cut(s) 288, 289, 347
PspOMI GGGCCC 1 cut(s) 287
PspPI GGNCC 2 cut(s) 287, 288
RsaI GTAC 3 cut(s) 5, 47, 147
RsaNI GTAC 3 cut(s) 4, 46, 146
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 3 cut(s) 114, 316, 359
Sau96I GGNCC 2 cut(s) 287, 288
ScaI AGTACT 1 cut(s) 47
SduI GDGCHC 2 cut(s) 291, 388
SetI ASST 4 cut(s) 147, 214, 233, 327
SfaNI GCATC 3 cut(s) 263, 284, 367
SsiI CCGC 1 cut(s) 343
SspMI CTAG 2 cut(s) 209, 397
TaiI ACGT 2 cut(s) 147, 327
TaqI TCGA 3 cut(s) 259, 352, 375
TatI WGTACW 2 cut(s) 3, 45
TfiI GAWTC 2 cut(s) 267, 299
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 5 cut(s) 53, 61, 74, 82, 212
TspRI CASTG 1 cut(s) 190
XspI CTAG 2 cut(s) 209, 397
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.