FvH4_6g05210

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001834
Physical Location & Seq
Forward (+)
2942590 .. 2943752
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05210.t1

Sequence Viewer

Length: 717 bp
ATGACCACTACAACACCTACTCAAAAGACCATAGCCGGTGTAGCCAATCTTGCTAACCTCCTACCTACCGGTACCGTCCTCGCATTCCAGGCCCTCATTCCTAGTTTCTCCAACAACGGCGAATGCCATCCTGCCAATAAGGGGCTTTCAATATCCTTGATTTTCATTTGTGCCTTCATCTGCTTATTCACCTCCTTTACTGATAGCTTCATAGACAGTACCGATGGGAAGTTCTATTATGGTATCATCACTAATGAAGGCATACACATCTTAAACCCTAGAGCAAAAGTGATTACTGATGATCAAAAAAAAGAAGAAGATGATGAAAAAAAGCGCCTGAGGAAGTATAGAATAAAGCGTATAGATTATCTTCATGCTTTTTTGTCACTATCTCTGTTCTTTATCTTTGCTCTTACCGATCTCAACGTGAAGAATTGCTTCTTTCCGAAACCATCAGATGATCTGAATCAGATCATTATCAATTTGCCTCTAGGAGCTGGGGTTTTTGCATCATTCTTATTCACAATTTTTCCAACTACTCGAAGAGGGATAGGATATACGCAGCCCCGGCCAAATAAGGAGGAAAAAATTGGTAACCAAAGCTCGACTACCACGGCGGGGTCAAAAGAATCGGACTTGGAAATGGGGCGTACCACCGGTGTGGCCGTAGGAGTCGAGGCTGATGCCAAGGCCCCCATTACAAACGCTACCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

239

Amino Acids

26.13

Weight (kDa)

8.29

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 13 - 186 1.7e-59 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 1 cut(s) 617
AcoI YGGCCR 2 cut(s) 569, 663
AfaI GTAC 3 cut(s) 73, 220, 652
AfiI CCNNNNNNNGG 2 cut(s) 141, 618
AgeI ACCGGT 2 cut(s) 68, 656
AgsI TTSAA 1 cut(s) 150
AjnI CCWGG 1 cut(s) 87
AleI CACNNNNGTG 1 cut(s) 659
AluBI AGCT 3 cut(s) 207, 497, 603
AluI AGCT 3 cut(s) 207, 497, 603
AoxI GGCC 4 cut(s) 90, 569, 663, 690
ApeKI GCWGC 1 cut(s) 562
AsiGI ACCGGT 2 cut(s) 68, 656
Asp700I GAANNNNTTC 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 91, 691
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 338
BanI GGYRCC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 574
BccI CCATC 3 cut(s) 135, 218, 460
BceAI ACGGC 3 cut(s) 133, 630, 650
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 568
BfaI CTAG 3 cut(s) 102, 279, 491
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 1 cut(s) 563
BlsI GCNGC 1 cut(s) 564
Bme1390I CCNGG 2 cut(s) 89, 568
BmgT120I GGNCC 2 cut(s) 91, 691
BmiI GGNNCC 2 cut(s) 73, 693
BmrFI CCNGG 2 cut(s) 89, 568
BmsI GCATC 2 cut(s) 518, 673
BpuMI CCSGG 1 cut(s) 568
BsaBI GATNNNNATC 2 cut(s) 465, 476
BsaJI CCNNGG 3 cut(s) 566, 612, 687
BsaWI WCCGGW 2 cut(s) 68, 656
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 618
Bse118I RCCGGY 3 cut(s) 35, 68, 656
Bse21I CCTNAGG 1 cut(s) 338
Bse8I GATNNNNATC 2 cut(s) 465, 476
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 566, 612, 687
BseGI GGATG 1 cut(s) 127
BseJI GATNNNNATC 2 cut(s) 465, 476
BseLI CCNNNNNNNGG 2 cut(s) 141, 618
BseMII CTCAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 574
BseYI CCCAGC 1 cut(s) 497
BshFI GGCC 4 cut(s) 92, 571, 665, 692
BshNI GGYRCC 1 cut(s) 71
BshTI ACCGGT 2 cut(s) 68, 656
BsiSI CCGG 4 cut(s) 36, 69, 568, 657
BslI CCNNNNNNNGG 2 cut(s) 141, 618
BsmI GAATGC 2 cut(s) 83, 128
BsnI GGCC 4 cut(s) 92, 571, 665, 692
Bsp143I GATC 4 cut(s) 301, 418, 460, 471
BspACI CCGC 1 cut(s) 617
BspANI GGCC 4 cut(s) 92, 571, 665, 692
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 73, 693
BspT107I GGYRCC 1 cut(s) 71
BsrFI RCCGGY 3 cut(s) 35, 68, 656
BssAI RCCGGY 3 cut(s) 35, 68, 656
BssECI CCNNGG 3 cut(s) 566, 612, 687
BssMI GATC 4 cut(s) 301, 418, 460, 471
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 76, 218
Bst6I CTCTTC 1 cut(s) 538
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 612
BstEII GGTNACC 1 cut(s) 593
BstF5I GGATG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 4 cut(s) 304, 421, 463, 474
BstMBI GATC 4 cut(s) 301, 418, 460, 471
BstMWI GCNNNNNNNGC 4 cut(s) 41, 50, 89, 568
BstNI CCWGG 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 87, 566
BstV1I GCAGC 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 661
Bsu36I CCTNAGG 1 cut(s) 338
BsuRI GGCC 4 cut(s) 92, 571, 665, 692
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 1 cut(s) 127
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 3 cut(s) 35, 68, 656
Cfr13I GGNCC 2 cut(s) 91, 691
Csp6I GTAC 3 cut(s) 72, 219, 651
CspAI ACCGGT 2 cut(s) 68, 656
CviAII CATG 1 cut(s) 374
CviQI GTAC 3 cut(s) 72, 219, 651
DdeI CTNAG 1 cut(s) 338
DpnI GATC 4 cut(s) 303, 420, 462, 473
DpnII GATC 4 cut(s) 301, 418, 460, 471
EaeI YGGCCR 2 cut(s) 569, 663
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 593
EcoO109I RGGNCCY 2 cut(s) 91, 691
EcoO65I GGTNACC 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 1 cut(s) 377
FaiI YATR 9 cut(s) 32, 212, 240, 263, 348, 362, 375, 558, 715
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 1 cut(s) 373
FauI CCCGC 1 cut(s) 610
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 563
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 563
FspBI CTAG 3 cut(s) 102, 279, 491
GlaI GCGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 563
GsaI CCCAGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 4 cut(s) 92, 571, 665, 692
HapII CCGG 4 cut(s) 36, 69, 568, 657
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 3 cut(s) 466, 629, 672
HpaII CCGG 4 cut(s) 36, 69, 568, 657
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 447, 457, 465, 471, 634
HpyAV CCTTC 2 cut(s) 184, 251
HpyCH4III ACNGT 2 cut(s) 76, 218
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 50, 89, 568
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 334
KpnI GGTACC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 4 cut(s) 301, 418, 460, 471
LmnI GCTCC 1 cut(s) 494
LpnPI CCDG 9 cut(s) 49, 74, 82, 101, 144, 350, 483, 581, 670
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 2 cut(s) 518, 673
MaeI CTAG 3 cut(s) 102, 279, 491
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 384, 593
MalI GATC 4 cut(s) 303, 420, 462, 473
MboI GATC 4 cut(s) 301, 418, 460, 471
MboII GAAGA 5 cut(s) 326, 329, 362, 442, 555
MluCI AATT 4 cut(s) 433, 481, 525, 588
MlyI GAGTC 1 cut(s) 681
MmeI TCCRAC 2 cut(s) 135, 557
MnlI CCTC 9 cut(s) 68, 89, 104, 202, 333, 498, 539, 574, 670
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 4 cut(s) 36, 69, 568, 657
MspR9I CCNGG 2 cut(s) 89, 568
Mva1269I GAATGC 2 cut(s) 83, 128
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 41, 50, 89, 568
NciI CCSGG 1 cut(s) 568
NdeII GATC 4 cut(s) 301, 418, 460, 471
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 2 cut(s) 73, 693
NmuCI GTSAC 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 659
PctI GAATGC 2 cut(s) 83, 128
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 466, 629
PinAI ACCGGT 2 cut(s) 68, 656
PkrI GCNGC 1 cut(s) 564
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 73, 693
PspPI GGNCC 2 cut(s) 91, 691
RsaI GTAC 3 cut(s) 73, 220, 652
RsaNI GTAC 3 cut(s) 72, 219, 651
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 563
Sau3AI GATC 4 cut(s) 301, 418, 460, 471
Sau96I GGNCC 2 cut(s) 91, 691
SchI GAGTC 1 cut(s) 681
ScrFI CCNGG 2 cut(s) 89, 568
SetI ASST 8 cut(s) 19, 60, 67, 194, 209, 429, 499, 605
SfaNI GCATC 2 cut(s) 518, 673
SgrAI CRCCGGYG 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 659
Sse9I AATT 4 cut(s) 433, 481, 525, 588
SsiI CCGC 1 cut(s) 617
SspMI CTAG 3 cut(s) 102, 279, 491
StyD4I CCNGG 2 cut(s) 87, 566
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 2 cut(s) 76, 218
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 541, 605, 675
TasI AATT 4 cut(s) 433, 481, 525, 588
TfiI GAWTC 2 cut(s) 466, 629
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 6 cut(s) 154, 166, 199, 270, 339, 362
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 102, 279, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.