Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001834

Physical Location & Seq

Genomic Coordinates Reverse (-)

28906863 .. 28908173

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTCAAAGGTGGCTCGAATTACCCTGTCCACCAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTTCTACCTACCGGCACAGTCCTCGCCTTTCAGACCCTCATTCCTACTTTCTCCAACAATGGGTCCTGCCAACTTTCCAATAAGTTCCTTACAGCATCTGTCATTATATTTTGTGCTCTCCTTTGTTTCTTATCTTCATTTACAGATAGCTTCAAGGACAATGATACTGATGGGAAACTCTATTATGGCATCGCCACATTCAAAGGCCTCTACATCTTTAACTACAGTAAACTTGAGAACATTAACACGGACTTGGAAAAGTATAAGATAAAGTTCTTAGATTTTGTTCACGCCTTTATGTCGCTCTTTGTGTTCTTGATCTTTGCTCTTAGCAACTCCCATGTGCAAAGCTGCTTCTTATCTGGCGTGGGAATAAACTACAGTGAGTTAGCAATGAATTTGCCACTAGGGGCTGGGATTTTATCAAGCTGCTTCTTCACAATCTTTCCAACTGCTCGTAGAGGGATCGGATACACAGACATGGTGCCCCCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

188

Amino Acids

20.49

Weight (kDa)

7.61

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27370
fragaria_vesca	FvH4_6g05181 FvH4_6g05200 FvH4_6g05210
malus_domestica	MD04G1211300.v1.1 MD12G1225200.v1.1
prunus_persica	Prupe.6G331700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0453861 RchiOBHm_Chr3g0453871 RchiOBHm_Chr3g0453891 RchiOBHm_Chr3g0453901 RchiOBHm_Chr3g0453911
rosa_laevigata	RLG00000025494 RLG00000025495 RLG00000025497
rosa_multiflora	Rmu_sc0003556.1_g000017 Rmu_sc0003556.1_g000021 Rmu_sc0003556.1_g000024 Rmu_sc0003556.1_g000025
rosa_roxburghii	Rroxscaffold_6G00430650 Rroxscaffold_6G00430680 Rroxscaffold_6G00430690 Rroxscaffold_6G00430710 Rroxscaffold_6G00430720 Rroxscaffold_6G00430730
rosa_rugosa	Rorug02G0651400 Rorug02G0651600 Rorug02G0651700.1 Rorug02G0651800
rosa_samantha	Rh3AG054100 Rh3AG054300 Rh3AG054400 Rh3BG055500 Rh3BG055700 Rh3BG056000 Rh3CG054500 Rh3CG054800 Rh3CG055000 Rh3CG055100 Rh3CG055200 Rh3DG055700 Rh3DG056100 Rh3DG056200 Rh3DG056300 Rh3DG056500
rosa_wichuraiana	Rw3G004160 Rw3G004170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	220, 268
AluBI	AGCT	3 cut(s)	216, 417, 495
AluI	AGCT	3 cut(s)	216, 417, 495
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	50, 417, 495
ApoI	RAATTY	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	62, 404, 482
BccI	CCATC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciVI	GTATCC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	2 cut(s)	289, 445
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	51, 418, 496
BlsI	GCNGC	3 cut(s)	52, 419, 497
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	130, 552
BmsI	GCATC	2 cut(s)	170, 264
BpuEI	CTTGAG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	62, 404, 482
BseYI	CCCAGC	2 cut(s)	479, 556
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	184, 555
Bsp143I	GATC	2 cut(s)	384, 531
BspANI	GGCC	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	130, 552
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	2 cut(s)	384, 531
Bst4CI	ACNGT	3 cut(s)	85, 293, 449
BstDEI	CTNAG	2 cut(s)	343, 395
BstKTI	GATC	2 cut(s)	387, 534
BstMBI	GATC	2 cut(s)	384, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 59
BstSFI	CTRYAG	2 cut(s)	289, 445
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	62, 404, 482
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	52, 454
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	2 cut(s)	407, 547
CviJI	RGCY	8 cut(s)	15, 44, 53, 216, 273, 417, 479, 495
CviKI_1	RGCY	8 cut(s)	15, 44, 53, 216, 273, 417, 479, 495
DdeI	CTNAG	2 cut(s)	343, 395
DpnI	GATC	2 cut(s)	386, 533
DpnII	GATC	2 cut(s)	384, 531
Eco147I	AGGCCT	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	129
FaeI	CATG	2 cut(s)	410, 550
FaiI	YATR	8 cut(s)	41, 173, 252, 330, 365, 408, 548, 562
FatI	CATG	2 cut(s)	406, 546
Fnu4HI	GCNGC	3 cut(s)	51, 418, 496
Fsp4HI	GCNGC	3 cut(s)	51, 418, 496
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	3 cut(s)	51, 418, 496
GsaI	CCCAGC	2 cut(s)	483, 560
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	2 cut(s)	410, 550
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	3 cut(s)	31, 296, 355
Hpy188I	TCNGA	2 cut(s)	99, 536
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	31, 296, 355
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	85, 293, 449
HpyCH4V	TGCA	2 cut(s)	50, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 59
HpyF3I	CTNAG	2 cut(s)	343, 395
Hsp92II	CATG	2 cut(s)	410, 550
Kzo9I	GATC	2 cut(s)	384, 531
LpnPI	CCDG	7 cut(s)	39, 47, 58, 91, 145, 414, 465
Lsp1109I	GCAGC	3 cut(s)	62, 404, 482
LweI	GCATC	2 cut(s)	170, 264
MaeI	CTAG	1 cut(s)	473
MalI	GATC	2 cut(s)	386, 533
MboI	GATC	2 cut(s)	384, 531
MboII	GAAGA	2 cut(s)	192, 493
MhlI	GDGCHC	2 cut(s)	184, 555
MluCI	AATT	2 cut(s)	19, 463
MmeI	TCCRAC	2 cut(s)	144, 539
MnlI	CCTC	4 cut(s)	98, 113, 284, 521
MseI	TTAA	2 cut(s)	285, 309
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	50, 59
NdeII	GATC	2 cut(s)	384, 531
NlaIII	CATG	2 cut(s)	410, 550
NlaIV	GGNNCC	2 cut(s)	130, 552
PceI	AGGCCT	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	52, 419, 497
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
PspFI	CCCAGC	2 cut(s)	479, 556
PspN4I	GGNNCC	2 cut(s)	130, 552
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	285, 309
SatI	GCNGC	3 cut(s)	51, 418, 496
Sau3AI	GATC	2 cut(s)	384, 531
Sau96I	GGNCC	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	184, 555
SetI	ASST	6 cut(s)	13, 69, 76, 218, 419, 497
SfaNI	GCATC	2 cut(s)	170, 264
SfcI	CTRYAG	2 cut(s)	289, 445
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	19, 463
SseBI	AGGCCT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	85, 293, 449
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	19, 463
Tru1I	TTAA	2 cut(s)	285, 309
Tru9I	TTAA	2 cut(s)	285, 309
TscAI	CASTG	2 cut(s)	52, 454
TseI	GCWGC	3 cut(s)	50, 417, 495
TspDTI	ATGAA	2 cut(s)	192, 476
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	52, 454
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	463
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.