Rroxscaffold_6G00430690

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001834
Physical Location & Seq
Forward (+)
50814340 .. 50814675
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430690.1

Sequence Viewer

Length: 336 bp
ATGACTACCGAAGACGTAACACCAACTCAAAAGACCATAGCCAGTGCAGCCAATCTTGCTGACCTCCTACCTACCGGCACCGTCCTCTCATTCCAAACCCTCATTCCTAGTTTCTCCAACAATGGATCATGCCATCCTGCCAATAAGGGCCTTTCAATATCCATCGTTGTAATCTGTGCCCTTATCTGCATCTTCTGCAACTTTACTGATAGCTTCATAGACAGTACCGATGGAAAATTCTATTATGGTATCATCACTCGCGAAGGCATGCACATCTTAAATCCTAGAGCAAAGGAGTATACGGATGACGAAAAAAAAGCGCTTGAGAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

5.18

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 15 - 104 4.7e-30 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 261
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 226
AfeI AGCGCT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AlwI GGATC 1 cut(s) 133
Aor51HI AGCGCT 1 cut(s) 321
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 141, 170, 224
BfaI CTAG 2 cut(s) 108, 285
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 133, 310
BseNI ACTGG 1 cut(s) 42
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 75
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 125
Bsp68I TCGCGA 1 cut(s) 261
BspANI GGCC 1 cut(s) 150
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 1 cut(s) 125
BssNAI GTATAC 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 82, 224
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 269
BstF5I GGATG 2 cut(s) 133, 310
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 195
BstNSI RCATGY 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 18
BstZ17I GTATAC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 133, 310
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 269
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 225
CviAII CATG 2 cut(s) 129, 268
CviJI RGCY 4 cut(s) 41, 50, 150, 213
CviKI_1 RGCY 4 cut(s) 41, 50, 150, 213
CviQI GTAC 1 cut(s) 225
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eco47III AGCGCT 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 148
FaeI CATG 2 cut(s) 132, 271
FaiI YATR 7 cut(s) 38, 130, 218, 246, 269, 300, 334
FatI CATG 2 cut(s) 128, 267
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 120, 317
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 108, 285
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 132, 271
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 82, 224
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 47, 189, 198, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 195
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 132, 271
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 55, 88, 150
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 108, 285
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 2 cut(s) 23, 184
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 74, 95, 110
MseI TTAA 1 cut(s) 278
MspI CCGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 195
NdeII GATC 1 cut(s) 125
NlaIII CATG 2 cut(s) 132, 271
NlaIV GGNNCC 1 cut(s) 79
NruI TCGCGA 1 cut(s) 261
NspI RCATGY 1 cut(s) 271
PaeI GCATGC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 148
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 125
Sau96I GGNCC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 18, 66, 73, 215
SfaNI GCATC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 271
Sse9I AATT 1 cut(s) 236
SspMI CTAG 2 cut(s) 108, 285
TaaI ACNGT 2 cut(s) 82, 224
TaiI ACGT 1 cut(s) 18
TasI AATT 1 cut(s) 236
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 2 cut(s) 108, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.