Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Reverse (-)

10342024 .. 10342997

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCAAATCCGAGTTTCAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGGAGGAGAAGGAGACTCTTCTGCCTCTCAGGTCAAGGCATTGTACATCAAGAATTTACCTAGAGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGTGGTGATCCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCACTACGCAGAGAGGACAAGCGTAATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGCTTCTGCCTATTCACAACCATTAATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATCATGTTACCTGATGGAAGGATCCGATACGTCTTGCAACAGCCTGGACTAGCAGCGATGCCACAACCACCACCGAGGCCTTCTCCACCGTATAGGGGAGGCAGCGGTTCGAGCAGTAGCAAACAAAGTAGCGACAATGGTAGAGGACGAAGCCGTTACAATCCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0030895 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050821 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

180

Amino Acids

19.69

Weight (kDa)

9.76

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 101	3e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	335, 477
AclWI	GGATC	3 cut(s)	187, 388, 401
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	19, 164, 277
AjnI	CCWGG	2 cut(s)	208, 415
AluBI	AGCT	4 cut(s)	22, 48, 272, 350
AluI	AGCT	4 cut(s)	22, 48, 272, 350
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	72
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	3 cut(s)	187, 388, 401
AoxI	GGCC	1 cut(s)	449
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	347, 425, 474
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	359, 437, 486
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	2 cut(s)	210, 417
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	126, 422
BisI	GCNGC	3 cut(s)	348, 426, 475
BlsI	GCNGC	3 cut(s)	349, 427, 476
Bme1390I	CCNGG	2 cut(s)	210, 417
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	210, 417
BmsI	GCATC	3 cut(s)	292, 357, 420
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BsaBI	GATNNNNATC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	210, 417
BseDI	CCNNGG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	359, 437, 486
BseYI	CCCAGC	1 cut(s)	48
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	192, 393
BspACI	CCGC	2 cut(s)	335, 477
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	187, 388, 401
BsrGI	TGTACA	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	2 cut(s)	192, 393
Bst2UI	CCWGG	2 cut(s)	210, 417
Bst4CI	ACNGT	3 cut(s)	43, 224, 462
Bst6I	CTCTTC	1 cut(s)	88
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	270, 333
BstDEI	CTNAG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	195, 396
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	192, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	2 cut(s)	210, 417
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	208, 415
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	359, 437, 486
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	451
BtgZI	GCGATG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	270, 333
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	332, 376
CviJI	RGCY	8 cut(s)	22, 48, 53, 272, 350, 415, 451, 525
CviKI_1	RGCY	8 cut(s)	22, 48, 53, 272, 350, 415, 451, 525
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	194, 395
DpnII	GATC	2 cut(s)	192, 393
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	208, 415
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	2 cut(s)	335, 379
FaiI	YATR	5 cut(s)	134, 294, 333, 377, 465
FatI	CATG	2 cut(s)	331, 375
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	348, 426, 475
Fsp4HI	GCNGC	3 cut(s)	348, 426, 475
FspBI	CTAG	2 cut(s)	126, 422
GluI	GCNGC	3 cut(s)	348, 426, 475
GsaI	CCCAGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	335, 379
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	56, 80
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	12, 398
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	68, 384, 462
HpyCH4III	ACNGT	3 cut(s)	43, 224, 462
HpyCH4IV	ACGT	2 cut(s)	145, 402
HpyCH4V	TGCA	3 cut(s)	241, 331, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	145, 402
Hsp92II	CATG	2 cut(s)	335, 379
Kzo9I	GATC	2 cut(s)	192, 393
LpnPI	CCDG	9 cut(s)	34, 80, 195, 213, 222, 336, 396, 402, 429
Lsp1109I	GCAGC	3 cut(s)	359, 437, 486
LweI	GCATC	3 cut(s)	292, 357, 420
MaeI	CTAG	2 cut(s)	126, 422
MaeII	ACGT	2 cut(s)	145, 402
MaeIII	GTNAC	3 cut(s)	341, 378, 527
MalI	GATC	2 cut(s)	194, 395
MboI	GATC	2 cut(s)	192, 393
MboII	GAAGA	2 cut(s)	75, 230
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	62, 100, 246, 332, 441, 464, 509
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	350, 477
MspR9I	CCNGG	2 cut(s)	210, 417
MvaI	CCWGG	2 cut(s)	210, 417
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	2 cut(s)	192, 393
NlaIII	CATG	2 cut(s)	335, 379
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	349, 427, 476
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	208, 415
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	2 cut(s)	208, 415
PspN4I	GGNNCC	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	3 cut(s)	348, 426, 475
Sau3AI	GATC	2 cut(s)	192, 393
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	210, 417
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	3 cut(s)	292, 357, 420
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	1 cut(s)	118
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	2 cut(s)	335, 477
SspMI	CTAG	2 cut(s)	126, 422
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	208, 415
TaaI	ACNGT	3 cut(s)	43, 224, 462
TaiI	ACGT	2 cut(s)	148, 405
TaqI	TCGA	2 cut(s)	362, 482
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	3 cut(s)	347, 425, 474
Tsp45I	GTSAC	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XspI	CTAG	2 cut(s)	126, 422
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.