Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Forward (+)

11226893 .. 11228560

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAGTTCAAACACAGATGTGGCGTTTGTGCACGAGGATAACGATTCTGGGAGTTTTTCCCAGAAACCACATAGATCACCTCTTCCGGTACCAAATGTTCAAGAACTGGTAAGGAATGATCCTTTACAGGTTCCCAAAAGATATATTAGGAACGAAGAAGACATGCCGAAGGAAGCGGATCTTTGTCATCATCTTTCTTCTGAGATTCCTATCATTGATGTTTCTTTGCTCTCCAAAGGGGACAACGAGGAGCTTCGCAAACTCGACCTGGCTTGCAAAGAATGGGGATTCTTTGTGATGATAAATCATGGAGTGGAAACAGAAGTAATGCAGGGCATGAAGGATGCTGCGGACAAGTTCTTTGAACTTCCAATAGAAGAGAAGAATTTTATTGCTGTGCCATCCGCTCAGAGACAAGGCTATGGTTTTAACCAAGCAATTTCTGAGGAGCAGATTTTGGATTGGTCTGACAGAATTCTTCTCGGCCTTTACCCATATCGACATAGAAAGCCTGAGGTTTGGCCACCGACACCATTCAAGGAGGCTATTGAGATATATGGTAGTGAAGTTAGACATGTTGCAGAGGAGCTCCTAAGATCTCTATCTTTGATTATGGGGATGGAGAAGGATGTTCTTCTTGGACTACATCAAGAGCTGGCTCAATATCTGTCTGTGGCCTATTATCCTTCATGCTCTATGCCTGATAAAGTACTAGGTCTAGCCCCTCACTCCGACAAAGCTAGCATAACCATACTTATGCAAGACGCCAGTCTTACCGGACTACAACTTAAACATGAAGAAAAATGGGTACCGGTGAAGCCAATTCCAAACTCTTTCGTTGTGAATGTTGGAGATACGATTGAGATATGGAGTAATGGGAGGTACAAGAGCATTGAGCACAGAGTTGTGACAAATGAAAGCAAAGCAAGGTTATCTTATGCATCATTTTTTGCGCCACATGAAGATGCAGAAATTGAACCCTTTGATCAAATGGTACTCAACTCTCCAGAGTCCATTCAGATATACAAGAAAGTCAGATATAGAGAATATATTAAGGAAATTATCTCGAAGAAGAAATTTTATGAGAAAGAACAAATTGAATTTGCCAAGATTGGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0030895 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050821 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

373

Amino Acids

42.81

Weight (kDa)

5.34

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	69 - 176	6.1e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 319	1.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	88, 808
AccB1I	GGYRCC	2 cut(s)	88, 808
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	3 cut(s)	176, 350, 405
AclWI	GGATC	2 cut(s)	113, 186
AcoI	YGGCCR	1 cut(s)	521
AcsI	RAATTY	4 cut(s)	385, 474, 1076, 1100
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	5 cut(s)	90, 711, 810, 884, 996
AflIII	ACRYGT	1 cut(s)	574
AgeI	ACCGGT	1 cut(s)	811
AgsI	TTSAA	6 cut(s)	9, 101, 365, 538, 977, 1100
AjnI	CCWGG	1 cut(s)	267
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	4 cut(s)	253, 589, 655, 740
AluI	AGCT	4 cut(s)	253, 589, 655, 740
Alw21I	GWGCWC	3 cut(s)	33, 591, 900
Alw26I	GTCTC	1 cut(s)	406
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	113, 186
AoxI	GGCC	3 cut(s)	484, 521, 675
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	4 cut(s)	385, 474, 1076, 1100
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsiGI	ACCGGT	1 cut(s)	811
Asp718I	GGTACC	2 cut(s)	88, 808
AspLEI	GCGC	1 cut(s)	955
AsuHPI	GGTGA	2 cut(s)	69, 826
AsuNHI	GCTAGC	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	523
BanI	GGYRCC	2 cut(s)	88, 808
BanII	GRGCYC	1 cut(s)	591
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	3 cut(s)	33, 591, 900
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	409, 613
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	985
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	3 cut(s)	713, 719, 741
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	90, 132, 810
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	3 cut(s)	334, 950, 955
BmtI	GCTAGC	1 cut(s)	744
BoxI	GACNNNNGTC	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	990
BsaBI	GATNNNNATC	2 cut(s)	209, 601
BsaHI	GRCGYC	1 cut(s)	765
BsaWI	WCCGGW	3 cut(s)	85, 776, 811
Bse118I	RCCGGY	1 cut(s)	811
Bse1I	ACTGG	2 cut(s)	111, 768
Bse21I	CCTNAGG	1 cut(s)	513
Bse8I	GATNNNNATC	2 cut(s)	209, 601
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	4 cut(s)	349, 401, 624, 634
BseJI	GATNNNNATC	2 cut(s)	209, 601
BseMII	CTCAG	4 cut(s)	192, 422, 435, 504
BseNI	ACTGG	2 cut(s)	111, 768
BseRI	GAGGAG	3 cut(s)	263, 461, 599
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	3 cut(s)	486, 523, 677
BshNI	GGYRCC	2 cut(s)	88, 808
BshTI	ACCGGT	1 cut(s)	811
BsiHKAI	GWGCWC	3 cut(s)	33, 591, 900
BsiSI	CCGG	3 cut(s)	86, 777, 812
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	486, 523, 677
Bsp1286I	GDGCHC	3 cut(s)	33, 591, 900
Bsp143I	GATC	5 cut(s)	74, 118, 178, 596, 985
BspACI	CCGC	3 cut(s)	176, 350, 405
BspANI	GGCC	3 cut(s)	486, 523, 677
BspCNI	CTCAG	4 cut(s)	193, 421, 436, 505
BspLI	GGNNCC	3 cut(s)	90, 132, 810
BspOI	GCTAGC	1 cut(s)	744
BspPI	GGATC	2 cut(s)	113, 186
BspT107I	GGYRCC	2 cut(s)	88, 808
BsrBI	CCGCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	111, 768
BssAI	RCCGGY	1 cut(s)	811
BssMI	GATC	5 cut(s)	74, 118, 178, 596, 985
BssNI	GRCGYC	1 cut(s)	765
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	87, 372
BstACI	GRCGYC	1 cut(s)	765
BstC8I	GCNNGC	3 cut(s)	274, 657, 742
BstDEI	CTNAG	5 cut(s)	201, 408, 444, 513, 593
BstF5I	GGATG	4 cut(s)	349, 401, 624, 634
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	5 cut(s)	77, 121, 181, 599, 988
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	5 cut(s)	74, 118, 178, 596, 985
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	2 cut(s)	166, 578
BstPAI	GACNNNNGTC	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	178, 596
BstYI	RGATCY	2 cut(s)	178, 596
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	486, 523, 677
BtsCI	GGATG	4 cut(s)	349, 401, 624, 634
Cac8I	GCNNGC	3 cut(s)	274, 657, 742
CfoI	GCGC	1 cut(s)	955
Cfr10I	RCCGGY	1 cut(s)	811
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	5 cut(s)	89, 710, 809, 883, 995
CspAI	ACCGGT	1 cut(s)	811
CviAII	CATG	7 cut(s)	163, 308, 337, 575, 690, 794, 959
CviQI	GTAC	5 cut(s)	89, 710, 809, 883, 995
DdeI	CTNAG	5 cut(s)	201, 408, 444, 513, 593
DpnI	GATC	5 cut(s)	76, 120, 180, 598, 987
DpnII	GATC	5 cut(s)	74, 118, 178, 596, 985
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	2 cut(s)	87, 372
EarI	CTCTTC	2 cut(s)	87, 372
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	589
Eco81I	CCTNAGG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	7 cut(s)	166, 311, 340, 578, 693, 797, 962
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 919, 951
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	7 cut(s)	162, 307, 336, 574, 689, 793, 958
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	4 cut(s)	356, 388, 631, 641
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	3 cut(s)	713, 719, 741
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	3 cut(s)	486, 523, 677
HapII	CCGG	3 cut(s)	86, 777, 812
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	1 cut(s)	955
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	7 cut(s)	166, 311, 340, 578, 693, 797, 962
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HinfI	GANTC	4 cut(s)	44, 205, 288, 1010
HpaII	CCGG	3 cut(s)	86, 777, 812
HphI	GGTGA	2 cut(s)	69, 826
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	7 cut(s)	202, 411, 445, 469, 733, 1020, 1037
Hpy188III	TCNNGA	4 cut(s)	101, 650, 1007, 1066
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	4 cut(s)	163, 334, 619, 696
HpyCH4V	TGCA	7 cut(s)	31, 276, 331, 581, 760, 941, 968
HpyF3I	CTNAG	5 cut(s)	201, 408, 444, 513, 593
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	7 cut(s)	166, 311, 340, 578, 693, 797, 962
HspAI	GCGC	1 cut(s)	953
KpnI	GGTACC	2 cut(s)	92, 812
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	5 cut(s)	74, 118, 178, 596, 985
LmnI	GCTCC	4 cut(s)	250, 448, 586, 594
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	3 cut(s)	334, 950, 955
MaeI	CTAG	3 cut(s)	713, 719, 741
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	5 cut(s)	76, 120, 180, 598, 987
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	5 cut(s)	74, 118, 178, 596, 985
MflI	RGATCY	2 cut(s)	178, 596
MhlI	GDGCHC	3 cut(s)	33, 591, 900
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	9 cut(s)	385, 438, 474, 822, 972, 1059, 1076, 1095, 1100
MluNI	TGGCCA	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	2 cut(s)	756, 829
MnlI	CCTC	9 cut(s)	28, 90, 241, 439, 508, 535, 577, 735, 873
Mox20I	TGGCCA	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	943
MscI	TGGCCA	1 cut(s)	523
MseI	TTAA	3 cut(s)	429, 789, 1053
MslI	CAYNNNNRTG	3 cut(s)	17, 755, 963
Msp20I	TGGCCA	1 cut(s)	523
MspI	CCGG	3 cut(s)	86, 777, 812
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
NdeII	GATC	5 cut(s)	74, 118, 178, 596, 985
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	7 cut(s)	166, 311, 340, 578, 693, 797, 962
NlaIV	GGNNCC	3 cut(s)	90, 132, 810
NmeAIII	GCCGAG	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	907
NsiI	ATGCAT	1 cut(s)	943
NspI	RCATGY	2 cut(s)	166, 578
OliI	CACNNNNGTG	1 cut(s)	17
PciI	ACATGT	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	44, 205, 288
PinAI	ACCGGT	1 cut(s)	811
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
PscI	ACATGT	1 cut(s)	574
PshAI	GACNNNNGTC	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	90, 132, 810
PsrI	GAACNNNNNNTAC	2 cut(s)	81, 113
PsuI	RGATCY	2 cut(s)	178, 596
RsaI	GTAC	5 cut(s)	90, 711, 810, 884, 996
RsaNI	GTAC	5 cut(s)	89, 710, 809, 883, 995
RseI	CAYNNNNRTG	3 cut(s)	17, 755, 963
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	429, 789, 1053
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	5 cut(s)	74, 118, 178, 596, 985
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	3 cut(s)	33, 591, 900
SfaNI	GCATC	3 cut(s)	334, 950, 955
SmiMI	CAYNNNNRTG	3 cut(s)	17, 755, 963
Sse9I	AATT	9 cut(s)	385, 438, 474, 822, 972, 1059, 1076, 1095, 1100
SsiI	CCGC	3 cut(s)	176, 350, 405
SspMI	CTAG	3 cut(s)	713, 719, 741
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	267
TaqI	TCGA	3 cut(s)	264, 499, 1067
TasI	AATT	9 cut(s)	385, 438, 474, 822, 972, 1059, 1076, 1095, 1100
TatI	WGTACW	1 cut(s)	709
TfiI	GAWTC	3 cut(s)	44, 205, 288
Tru1I	TTAA	3 cut(s)	429, 789, 1053
Tru9I	TTAA	3 cut(s)	429, 789, 1053
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	5 cut(s)	353, 678, 810, 930, 975
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	4 cut(s)	385, 474, 1076, 1100
XceI	RCATGY	2 cut(s)	166, 578
XspI	CTAG	3 cut(s)	713, 719, 741
ZrmI	AGTACT	1 cut(s)	711
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.