Heterogeneous nuclear ribonucleoprotein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1223, 1464 |
| AccB1I | GGYRCC | 1 cut(s) | 1196 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1081 |
| AccBSI | CCGCTC | 1 cut(s) | 1404 |
| AciI | CCGC | 1 cut(s) | 1404 |
| AclWI | GGATC | 2 cut(s) | 824, 1135 |
| AcoI | YGGCCR | 1 cut(s) | 1072 |
| AcsI | RAATTY | 3 cut(s) | 542, 788, 886 |
| AdeI | CACNNNGTG | 1 cut(s) | 1172 |
| AfaI | GTAC | 2 cut(s) | 1008, 1448 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 109, 341, 919, 1081, 1439 |
| AgsI | TTSAA | 7 cut(s) | 47, 493, 532, 570, 765, 932, 1045 |
| AjnI | CCWGG | 3 cut(s) | 661, 1261, 1339 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 342, 374 |
| AleI | CACNNNNGTG | 2 cut(s) | 750, 953 |
| AluBI | AGCT | 6 cut(s) | 618, 796, 822, 925, 968, 1078 |
| AluI | AGCT | 6 cut(s) | 618, 796, 822, 925, 968, 1078 |
| Alw21I | GWGCWC | 2 cut(s) | 1210, 1348 |
| Alw44I | GTGCAC | 1 cut(s) | 1344 |
| AlwI | GGATC | 2 cut(s) | 824, 1135 |
| AoxI | GGCC | 2 cut(s) | 1072, 1100 |
| ApaLI | GTGCAC | 1 cut(s) | 1344 |
| ApeKI | GCWGC | 3 cut(s) | 854, 968, 1229 |
| ApoI | RAATTY | 3 cut(s) | 542, 788, 886 |
| AspS9I | GGNCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| AsuHPI | GGTGA | 5 cut(s) | 104, 292, 473, 877, 1353 |
| AvaII | GGWCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| AxyI | CCTNAGG | 1 cut(s) | 105 |
| BaeGI | GKGCMC | 1 cut(s) | 1348 |
| BanI | GGYRCC | 1 cut(s) | 1196 |
| BauI | CACGAG | 1 cut(s) | 1170 |
| Bbv12I | GWGCWC | 2 cut(s) | 1210, 1348 |
| BbvI | GCAGC | 3 cut(s) | 841, 955, 1216 |
| BccI | CCATC | 2 cut(s) | 83, 1304 |
| BceAI | ACGGC | 1 cut(s) | 1087 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 833, 867 |
| BciT130I | CCWGG | 3 cut(s) | 663, 1263, 1341 |
| BfaI | CTAG | 2 cut(s) | 797, 1158 |
| BfmI | CTRYAG | 3 cut(s) | 414, 1230, 1275 |
| BfuAI | ACCTGC | 2 cut(s) | 1223, 1464 |
| BglII | AGATCT | 1 cut(s) | 631 |
| BisI | GCNGC | 3 cut(s) | 855, 969, 1230 |
| BlsI | GCNGC | 3 cut(s) | 856, 970, 1231 |
| Bme1390I | CCNGG | 3 cut(s) | 663, 1263, 1341 |
| Bme18I | GGWCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| BmgT120I | GGNCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| BmiI | GGNNCC | 3 cut(s) | 783, 1198, 1272 |
| BmrFI | CCNGG | 3 cut(s) | 663, 1263, 1341 |
| BmrI | ACTGGG | 1 cut(s) | 1470 |
| BmsI | GCATC | 4 cut(s) | 367, 505, 1281, 1378 |
| BmuI | ACTGGG | 1 cut(s) | 1470 |
| BpmI | CTGGAG | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 1 cut(s) | 369 |
| BsaBI | GATNNNNATC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 4 cut(s) | 5, 611, 715, 937 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 109, 341, 919, 1081, 1439 |
| Bse118I | RCCGGY | 1 cut(s) | 1267 |
| Bse1I | ACTGG | 6 cut(s) | 41, 247, 676, 687, 1026, 1465 |
| Bse21I | CCTNAGG | 1 cut(s) | 105 |
| Bse3DI | GCAATG | 2 cut(s) | 120, 1459 |
| Bse8I | GATNNNNATC | 1 cut(s) | 231 |
| BseBI | CCWGG | 3 cut(s) | 663, 1263, 1341 |
| BseDI | CCNNGG | 4 cut(s) | 5, 611, 715, 937 |
| BseGI | GGATG | 3 cut(s) | 124, 226, 304 |
| BseJI | GATNNNNATC | 1 cut(s) | 231 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 109, 341, 919, 1081, 1439 |
| BseMI | GCAATG | 2 cut(s) | 120, 1459 |
| BseMII | CTCAG | 3 cut(s) | 96, 626, 875 |
| BseNI | ACTGG | 6 cut(s) | 41, 247, 676, 687, 1026, 1465 |
| BseRI | GAGGAG | 2 cut(s) | 122, 212 |
| BseSI | GKGCMC | 1 cut(s) | 1348 |
| BseXI | GCAGC | 3 cut(s) | 841, 955, 1216 |
| BseYI | CCCAGC | 3 cut(s) | 618, 822, 1190 |
| BsgI | GTGCAG | 1 cut(s) | 1236 |
| BshFI | GGCC | 2 cut(s) | 1074, 1102 |
| BshNI | GGYRCC | 1 cut(s) | 1196 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1210, 1348 |
| BsiSI | CCGG | 1 cut(s) | 1268 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 109, 341, 919, 1081, 1439 |
| BsmI | GAATGC | 1 cut(s) | 366 |
| BsnI | GGCC | 2 cut(s) | 1074, 1102 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1210, 1348 |
| Bsp1407I | TGTACA | 1 cut(s) | 1006 |
| Bsp143I | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| Bsp19I | CCATGG | 1 cut(s) | 937 |
| BspACI | CCGC | 1 cut(s) | 1404 |
| BspANI | GGCC | 2 cut(s) | 1074, 1102 |
| BspCNI | CTCAG | 3 cut(s) | 97, 627, 874 |
| BspHI | TCATGA | 1 cut(s) | 373 |
| BspLI | GGNNCC | 3 cut(s) | 783, 1198, 1272 |
| BspMAI | CTGCAG | 2 cut(s) | 1234, 1279 |
| BspMI | ACCTGC | 2 cut(s) | 1223, 1464 |
| BspPI | GGATC | 2 cut(s) | 824, 1135 |
| BspT107I | GGYRCC | 1 cut(s) | 1196 |
| BsrBI | CCGCTC | 1 cut(s) | 1404 |
| BsrDI | GCAATG | 2 cut(s) | 120, 1459 |
| BsrFI | RCCGGY | 1 cut(s) | 1267 |
| BsrGI | TGTACA | 1 cut(s) | 1006 |
| BsrI | ACTGG | 6 cut(s) | 41, 247, 676, 687, 1026, 1465 |
| BssAI | RCCGGY | 1 cut(s) | 1267 |
| BssECI | CCNNGG | 4 cut(s) | 5, 611, 715, 937 |
| BssMI | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| BssSI | CACGAG | 1 cut(s) | 1170 |
| BssT1I | CCWWGG | 3 cut(s) | 5, 611, 937 |
| Bst2BI | CACGAG | 1 cut(s) | 1170 |
| Bst2UI | CCWGG | 3 cut(s) | 663, 1263, 1341 |
| Bst4CI | ACNGT | 2 cut(s) | 590, 817 |
| Bst6I | CTCTTC | 4 cut(s) | 117, 156, 171, 204 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1238 |
| BstAUI | TGTACA | 1 cut(s) | 1006 |
| BstC8I | GCNNGC | 4 cut(s) | 315, 966, 1076, 1279 |
| BstDEI | CTNAG | 3 cut(s) | 105, 635, 861 |
| BstDSI | CCRYGG | 1 cut(s) | 937 |
| BstF5I | GGATG | 3 cut(s) | 124, 226, 304 |
| BstKTI | GATC | 5 cut(s) | 85, 634, 832, 1114, 1130 |
| BstMBI | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 515, 1037, 1196, 1205, 1214, 1238 |
| BstNI | CCWGG | 3 cut(s) | 663, 1263, 1341 |
| BstNSI | RCATGY | 2 cut(s) | 317, 753 |
| BstSCI | CCNGG | 3 cut(s) | 661, 1261, 1339 |
| BstSFI | CTRYAG | 3 cut(s) | 414, 1230, 1275 |
| BstSLI | GKGCMC | 1 cut(s) | 1348 |
| BstV1I | GCAGC | 3 cut(s) | 841, 955, 1216 |
| BstX2I | RGATCY | 2 cut(s) | 631, 829 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 618 |
| BstYI | RGATCY | 2 cut(s) | 631, 829 |
| Bsu36I | CCTNAGG | 1 cut(s) | 105 |
| BsuRI | GGCC | 2 cut(s) | 1074, 1102 |
| BtgI | CCRYGG | 1 cut(s) | 937 |
| BtsCI | GGATG | 3 cut(s) | 124, 226, 304 |
| BtsI | GCAGTG | 1 cut(s) | 277 |
| BtsIMutI | CAGTG | 5 cut(s) | 240, 277, 822, 1033, 1050 |
| BveI | ACCTGC | 2 cut(s) | 1223, 1464 |
| Cac8I | GCNNGC | 4 cut(s) | 315, 966, 1076, 1279 |
| CciI | TCATGA | 1 cut(s) | 373 |
| Cfr10I | RCCGGY | 1 cut(s) | 1267 |
| Cfr13I | GGNCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| CseI | GACGC | 1 cut(s) | 1479 |
| CsiI | ACCWGGT | 1 cut(s) | 1339 |
| Csp6I | GTAC | 2 cut(s) | 1007, 1447 |
| CviAII | CATG | 9 cut(s) | 236, 314, 341, 374, 750, 938, 1033, 1282, 1466 |
| CviQI | GTAC | 2 cut(s) | 1007, 1447 |
| DdeI | CTNAG | 3 cut(s) | 105, 635, 861 |
| DpnI | GATC | 5 cut(s) | 84, 633, 831, 1113, 1129 |
| DpnII | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| DraI | TTTAAA | 2 cut(s) | 396, 918 |
| DraIII | CACNNNGTG | 1 cut(s) | 1172 |
| EaeI | YGGCCR | 1 cut(s) | 1072 |
| Eam1104I | CTCTTC | 4 cut(s) | 117, 156, 171, 204 |
| EarI | CTCTTC | 4 cut(s) | 117, 156, 171, 204 |
| Eco130I | CCWWGG | 3 cut(s) | 5, 611, 937 |
| Eco47I | GGWCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| Eco81I | CCTNAGG | 1 cut(s) | 105 |
| EcoRII | CCWGG | 3 cut(s) | 661, 1261, 1339 |
| EcoT14I | CCWWGG | 3 cut(s) | 5, 611, 937 |
| ErhI | CCWWGG | 3 cut(s) | 5, 611, 937 |
| FaeI | CATG | 9 cut(s) | 239, 317, 344, 377, 753, 941, 1036, 1285, 1469 |
| FatI | CATG | 9 cut(s) | 235, 313, 340, 373, 749, 937, 1032, 1281, 1465 |
| Fnu4HI | GCNGC | 3 cut(s) | 855, 969, 1230 |
| FokI | GGATG | 3 cut(s) | 131, 233, 311 |
| Fsp4HI | GCNGC | 3 cut(s) | 855, 969, 1230 |
| FspBI | CTAG | 2 cut(s) | 797, 1158 |
| GluI | GCNGC | 3 cut(s) | 855, 969, 1230 |
| GsaI | CCCAGC | 3 cut(s) | 622, 826, 1194 |
| GsuI | CTGGAG | 1 cut(s) | 684 |
| HaeIII | GGCC | 2 cut(s) | 1074, 1102 |
| HapII | CCGG | 1 cut(s) | 1268 |
| HgaI | GACGC | 1 cut(s) | 1479 |
| Hin1II | CATG | 9 cut(s) | 239, 317, 344, 377, 753, 941, 1036, 1285, 1469 |
| HincII | GTYRAC | 1 cut(s) | 733 |
| HindII | GTYRAC | 1 cut(s) | 733 |
| HinfI | GANTC | 4 cut(s) | 65, 227, 455, 845 |
| HpaII | CCGG | 1 cut(s) | 1268 |
| HphI | GGTGA | 5 cut(s) | 104, 292, 473, 877, 1353 |
| Hpy166II | GTNNAC | 3 cut(s) | 733, 781, 1346 |
| Hpy188I | TCNGA | 7 cut(s) | 70, 289, 349, 438, 514, 636, 1401 |
| Hpy188III | TCNNGA | 6 cut(s) | 86, 374, 386, 949, 978, 1257 |
| Hpy8I | GTNNAC | 3 cut(s) | 733, 781, 1346 |
| HpyAV | CCTTC | 5 cut(s) | 70, 341, 439, 862, 1374 |
| HpyCH4III | ACNGT | 2 cut(s) | 590, 817 |
| HpyCH4IV | ACGT | 1 cut(s) | 498 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 515, 1037, 1196, 1205, 1214, 1238 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 635, 861 |
| HpySE526I | ACGT | 1 cut(s) | 498 |
| Hsp92II | CATG | 9 cut(s) | 239, 317, 344, 377, 753, 941, 1036, 1285, 1469 |
| Kzo9I | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| LmnI | GCTCC | 5 cut(s) | 615, 814, 922, 1276, 1401 |
| Lsp1109I | GCAGC | 3 cut(s) | 841, 955, 1216 |
| LweI | GCATC | 4 cut(s) | 367, 505, 1281, 1378 |
| MabI | ACCWGGT | 1 cut(s) | 1339 |
| MaeI | CTAG | 2 cut(s) | 797, 1158 |
| MaeII | ACGT | 1 cut(s) | 498 |
| MaeIII | GTNAC | 5 cut(s) | 92, 424, 484, 667, 901 |
| MalI | GATC | 5 cut(s) | 84, 633, 831, 1113, 1129 |
| MbiI | CCGCTC | 1 cut(s) | 1404 |
| MboI | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| MflI | RGATCY | 2 cut(s) | 631, 829 |
| MhlI | GDGCHC | 2 cut(s) | 1210, 1348 |
| MluCI | AATT | 6 cut(s) | 527, 542, 788, 886, 996, 1057 |
| MlyI | GAGTC | 2 cut(s) | 74, 854 |
| MmeI | TCCRAC | 3 cut(s) | 836, 1062, 1379 |
| MseI | TTAA | 4 cut(s) | 395, 546, 792, 917 |
| MslI | CAYNNNNRTG | 4 cut(s) | 270, 750, 953, 1286 |
| MspA1I | CMGCKG | 2 cut(s) | 968, 1078 |
| MspI | CCGG | 1 cut(s) | 1268 |
| MspR9I | CCNGG | 3 cut(s) | 663, 1263, 1341 |
| Mva1269I | GAATGC | 1 cut(s) | 366 |
| MvaI | CCWGG | 3 cut(s) | 663, 1263, 1341 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 515, 1037, 1196, 1205, 1214, 1238 |
| NcoI | CCATGG | 1 cut(s) | 937 |
| NdeII | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| NlaIII | CATG | 9 cut(s) | 239, 317, 344, 377, 753, 941, 1036, 1285, 1469 |
| NlaIV | GGNNCC | 3 cut(s) | 783, 1198, 1272 |
| NmeAIII | GCCGAG | 1 cut(s) | 868 |
| NmuCI | GTSAC | 3 cut(s) | 92, 484, 901 |
| NspI | RCATGY | 2 cut(s) | 317, 753 |
| OliI | CACNNNNGTG | 2 cut(s) | 750, 953 |
| PaeI | GCATGC | 1 cut(s) | 317 |
| PagI | TCATGA | 1 cut(s) | 373 |
| PctI | GAATGC | 1 cut(s) | 366 |
| PfeI | GAWTC | 2 cut(s) | 227, 455 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1081 |
| PfoI | TCCNGGA | 1 cut(s) | 661 |
| PkrI | GCNGC | 3 cut(s) | 856, 970, 1231 |
| PleI | GAGTC | 2 cut(s) | 73, 853 |
| PpsI | GAGTC | 2 cut(s) | 73, 853 |
| Psp6I | CCWGG | 3 cut(s) | 661, 1261, 1339 |
| PspFI | CCCAGC | 3 cut(s) | 618, 822, 1190 |
| PspGI | CCWGG | 3 cut(s) | 661, 1261, 1339 |
| PspN4I | GGNNCC | 3 cut(s) | 783, 1198, 1272 |
| PspPI | GGNCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| PstI | CTGCAG | 2 cut(s) | 1234, 1279 |
| PsuI | RGATCY | 2 cut(s) | 631, 829 |
| PvuII | CAGCTG | 2 cut(s) | 968, 1078 |
| RsaI | GTAC | 2 cut(s) | 1008, 1448 |
| RsaNI | GTAC | 2 cut(s) | 1007, 1447 |
| RseI | CAYNNNNRTG | 4 cut(s) | 270, 750, 953, 1286 |
| SaqAI | TTAA | 4 cut(s) | 395, 546, 792, 917 |
| SatI | GCNGC | 3 cut(s) | 855, 969, 1230 |
| Sau3AI | GATC | 5 cut(s) | 82, 631, 829, 1111, 1127 |
| Sau96I | GGNCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| SbfI | CCTGCAGG | 1 cut(s) | 1279 |
| SchI | GAGTC | 2 cut(s) | 74, 854 |
| ScrFI | CCNGG | 3 cut(s) | 663, 1263, 1341 |
| SdaI | CCTGCAGG | 1 cut(s) | 1279 |
| SduI | GDGCHC | 2 cut(s) | 1210, 1348 |
| SexAI | ACCWGGT | 1 cut(s) | 1339 |
| SfaNI | GCATC | 4 cut(s) | 367, 505, 1281, 1378 |
| SfcI | CTRYAG | 3 cut(s) | 414, 1230, 1275 |
| SinI | GGWCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 270, 750, 953, 1286 |
| SmlI | CTYRAG | 1 cut(s) | 384 |
| SmoI | CTYRAG | 1 cut(s) | 384 |
| SphI | GCATGC | 1 cut(s) | 317 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1279 |
| Sse9I | AATT | 6 cut(s) | 527, 542, 788, 886, 996, 1057 |
| SsiI | CCGC | 1 cut(s) | 1404 |
| SspMI | CTAG | 2 cut(s) | 797, 1158 |
| StyD4I | CCNGG | 3 cut(s) | 661, 1261, 1339 |
| StyI | CCWWGG | 3 cut(s) | 5, 611, 937 |
| TaaI | ACNGT | 2 cut(s) | 590, 817 |
| TaiI | ACGT | 1 cut(s) | 501 |
| TasI | AATT | 6 cut(s) | 527, 542, 788, 886, 996, 1057 |
| TatI | WGTACW | 1 cut(s) | 1006 |
| TfiI | GAWTC | 2 cut(s) | 227, 455 |
| Tru1I | TTAA | 4 cut(s) | 395, 546, 792, 917 |
| Tru9I | TTAA | 4 cut(s) | 395, 546, 792, 917 |
| TscAI | CASTG | 5 cut(s) | 247, 277, 822, 1033, 1057 |
| TseFI | GTSAC | 3 cut(s) | 92, 484, 901 |
| TseI | GCWGC | 3 cut(s) | 854, 968, 1229 |
| Tsp45I | GTSAC | 3 cut(s) | 92, 484, 901 |
| TspGWI | ACGGA | 2 cut(s) | 443, 1330 |
| TspRI | CASTG | 5 cut(s) | 247, 277, 822, 1033, 1057 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1081 |
| VneI | GTGCAC | 1 cut(s) | 1344 |
| VpaK11BI | GGWCC | 6 cut(s) | 659, 781, 1023, 1259, 1265, 1430 |
| XapI | RAATTY | 3 cut(s) | 542, 788, 886 |
| XceI | RCATGY | 2 cut(s) | 317, 753 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 819 |
| XspI | CTAG | 2 cut(s) | 797, 1158 |