Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Forward (+)

22395976 .. 22396497

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTGGTTGTATCGTGTCATTCCCAGGAATTCAATTTACCTTTTTGTGGTCAAAGTAATGGGGAGAAGCTCTTGCACGTGGTCTGGCGGTTTTGGGTAATGGTGTTGAAGGGAGTATCTTTCCTCTTGAGGTTGGCTGTGAGGATGTATTTTGTCTCCTGGGTTAGTATGGATGAAGTGCTGTTGATATGGCGTTATGTCCGGGGACTACATGTTTTATTCTCGGTGTTTTCTTGTTGTCAATGTGGTAGTGACTTGCTCTTGCACGTGGTCTGGTTGGATTGGGACACGGTGTTGATGAAGGGGAAGTGGTTGTGTGTAATGTTGGCTGCAGGGATTTATCGTGACTCTCAGAAGTTGTCTTATGTTGTAGCCCGAGTTGAGGGGCGATTGGTTTGGTTAGGGGTTGAGCCCTTTTGGCTCATGGATGTCATCGTGGATGACGGACCCGTAACTGAGGGTGTTCTTAGGGAGGAGAGTGGAGAACTTATGTCCACCACCGGTCATTCCCGTTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0071704 GO:0080090 GO:0090304 GO:0097452 GO:1901360 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

173

Amino Acids

19.95

Weight (kDa)

6.19

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	29
AcvI	CACGTG	2 cut(s)	79, 268
AfiI	CCNNNNNNNGG	2 cut(s)	47, 382
AflIII	ACRYGT	1 cut(s)	211
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	34, 109
AjnI	CCWGG	2 cut(s)	24, 158
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	414
BbrPI	CACGTG	2 cut(s)	79, 268
BbvI	GCAGC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	26, 160
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	3 cut(s)	26, 160, 203
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	26, 160, 203
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	2 cut(s)	79, 268
BsaJI	CCNNGG	3 cut(s)	24, 159, 202
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 382
Bse118I	RCCGGY	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	26, 160
BseDI	CCNNGG	3 cut(s)	24, 159, 202
BseGI	GGATG	4 cut(s)	150, 178, 433, 445
BseLI	CCNNNNNNNGG	2 cut(s)	47, 382
BseMII	CTCAG	2 cut(s)	365, 447
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	316
BshTI	ACCGGT	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	202, 501
BslFI	GGGAC	2 cut(s)	219, 299
BslI	CCNNNNNNNGG	2 cut(s)	47, 382
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	219, 299
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	414
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	2 cut(s)	364, 448
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	24, 159, 202
Bst2UI	CCWGG	2 cut(s)	26, 160
Bst4CI	ACNGT	1 cut(s)	292
BstBAI	YACGTR	2 cut(s)	79, 268
BstDEI	CTNAG	3 cut(s)	351, 456, 467
BstF5I	GGATG	4 cut(s)	150, 178, 433, 445
BstMAI	GTCTC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	2 cut(s)	26, 160
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	24, 158, 201
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	150, 178, 433, 445
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	446
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	2 cut(s)	212, 424
CviJI	RGCY	6 cut(s)	70, 137, 329, 374, 412, 421
CviKI_1	RGCY	6 cut(s)	70, 137, 329, 374, 412, 421
DdeI	CTNAG	3 cut(s)	351, 456, 467
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	446
Eco72I	CACGTG	2 cut(s)	79, 268
Eco88I	CYCGRG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	24, 158
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	2 cut(s)	215, 427
FaiI	YATR	8 cut(s)	170, 190, 198, 213, 366, 425, 491, 518
FaqI	GGGAC	2 cut(s)	219, 299
FatI	CATG	2 cut(s)	211, 423
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	4 cut(s)	157, 185, 440, 452
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	2 cut(s)	202, 501
Hin1II	CATG	2 cut(s)	215, 427
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	2 cut(s)	202, 501
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	2 cut(s)	127, 344
Hpy8I	GTNNAC	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	103, 295
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	78, 267
HpyCH4V	TGCA	3 cut(s)	76, 265, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	3 cut(s)	351, 456, 467
HpySE526I	ACGT	2 cut(s)	78, 267
Hsp92II	CATG	2 cut(s)	215, 427
LpnPI	CCDG	9 cut(s)	11, 38, 70, 145, 172, 215, 259, 318, 514
Lsp1109I	GCAGC	1 cut(s)	316
MaeII	ACGT	2 cut(s)	78, 267
MaeIII	GTNAC	3 cut(s)	251, 344, 451
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	2 cut(s)	29, 34
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	123, 134, 135, 376, 451, 466
MspI	CCGG	2 cut(s)	202, 501
MspR9I	CCNGG	3 cut(s)	26, 160, 203
MvaI	CCWGG	2 cut(s)	26, 160
MwoI	GCNNNNNNNGC	1 cut(s)	418
NciI	CCSGG	1 cut(s)	203
NlaIII	CATG	2 cut(s)	215, 427
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	251, 344
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	341
PmaCI	CACGTG	2 cut(s)	79, 268
PmlI	CACGTG	2 cut(s)	79, 268
PpsI	GAGTC	1 cut(s)	341
Ppu21I	YACGTR	2 cut(s)	79, 268
PscI	ACATGT	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	24, 158
PspCI	CACGTG	2 cut(s)	79, 268
PspGI	CCWGG	2 cut(s)	24, 158
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	334
SatI	GCNGC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	26, 160, 203
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	5 cut(s)	43, 72, 81, 134, 270
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	29, 34
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	3 cut(s)	24, 158, 201
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	81, 270
TasI	AATT	2 cut(s)	29, 34
TseFI	GTSAC	2 cut(s)	251, 344
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	251, 344
TspDTI	ATGAA	2 cut(s)	189, 314
TspGWI	ACGGA	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.