Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Reverse (-)

22372436 .. 22374883

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0217300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTTCGCGTCGGCTCTTAACCCCTCTTCTCCGATCCCCTTCCAGATTTTCGATCTCAAACCATAACCCTACCCTATCAACCCCCTCGCAATCGCCTCCCCCCGCTTCGCCGTACGCCCACCTCCTCCGGAATGCTCTTCTTACCGGCCGCCGCATGCTCCACGCCTCTTCTTCTATCATCACTAACTCAGAGGTGCCTGCTTTGCTTGGCCGTATCCCATCTACTGTTCGATACCAAGCTACTGCAGCTACTTATCTTGGAGGACTTAGAACAACCTACAAGCGTTCCATCTCTTCTGCCCAAGCTATTCATGTGCCTTCTGTCCAACAGACCCTTGCTACTAGAACTAAGGTTGTTGACTTTCTTGCACCATACCAAAGAAGAGGAAATATTGGGTTGTTTGGTGGGGTTGGTGTAGGGAAAAACTATGCTCACTATTCAGCTCAACCTGGTGGCAAAAGTGGAGGATTCAAAAAACAGCGCAAGGGAAGAATGAAAGGACTATCTTGCCGAGGTAATCGTATCAGCTTTGGTAAATATGGTCTTCAAGCGCTTGAACCTGCTTGGATCACAGCTAGACAAATAGAAGCAGGGCGGAGAGCAATGTCACGAAATGCACGTGGCGGAGGGAAAATATGGGTACGAGTAATTTCAGACAAACCAGTTACAGCAAAGCCTACAGAAGTACGTATGGGCAAGGGGAAAGGAGCTGTCTCGCATATGGTGGCTGTTGTTTTACCGGGCAGAATACTTTATGAAGTGAGCGGAGTAGCAGAAAATGTAGCCAGAAGGGCTATTACTATAGCTGGATCCAAAATGCCTATAAAAACTAAATTTGTTGTCTCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0071704 GO:0080090 GO:0090304 GO:0097452 GO:1901360 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

284

Amino Acids

30.54

Weight (kDa)

11.71

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synthase_beta	PF11421	1 - 43	5.2e-06	ATP synthase F1 beta subunit
Ribosomal_L16	PF00252	158 - 281	3.8e-43	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	768
AccII	CGCG	1 cut(s)	10
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	6 cut(s)	105, 151, 154, 598, 627, 768
AclWI	GGATC	4 cut(s)	30, 578, 807, 820
AcoI	YGGCCR	2 cut(s)	148, 211
AcsI	RAATTY	1 cut(s)	836
AcvI	CACGTG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	116, 645, 690
AfeI	AGCGCT	1 cut(s)	555
AgsI	TTSAA	3 cut(s)	475, 551, 560
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	8 cut(s)	242, 251, 308, 446, 531, 578, 713, 809
AluI	AGCT	8 cut(s)	242, 251, 308, 446, 531, 578, 713, 809
Alw26I	GTCTC	2 cut(s)	721, 850
AlwI	GGATC	4 cut(s)	30, 578, 807, 820
Aor13HI	TCCGGA	1 cut(s)	129
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	2 cut(s)	148, 211
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	2 cut(s)	486, 556
AsuC2I	CCSGG	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	196
BarI	GAAGNNNNNNTAC	2 cut(s)	784, 816
BbrPI	CACGTG	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	229, 299
BceAI	ACGGC	2 cut(s)	97, 198
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	721, 850
BfaI	CTAG	2 cut(s)	345, 579
BfmI	CTRYAG	3 cut(s)	246, 681, 804
BfoI	RGCGCY	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	571
BfuI	GTATCC	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	794
BisI	GCNGC	3 cut(s)	151, 154, 249
BlsI	GCNGC	3 cut(s)	152, 155, 250
Bme1390I	CCNGG	2 cut(s)	453, 744
BmiI	GGNNCC	2 cut(s)	198, 814
BmrFI	CCNGG	2 cut(s)	453, 744
BpiI	GAAGAC	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	744
BsaAI	YACGTR	2 cut(s)	623, 692
BsaJI	CCNNGG	1 cut(s)	514
BsaWI	WCCGGW	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	150, 213
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	130, 147, 743
BsiWI	CGTACG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	721, 850
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	150, 213
Bsp13I	TCCGGA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	35, 54, 570, 812
BspACI	CCGC	6 cut(s)	105, 151, 154, 598, 627, 768
BspANI	GGCC	2 cut(s)	150, 213
BspCNI	CTCAG	1 cut(s)	203
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	198, 814
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	4 cut(s)	30, 578, 807, 820
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	4 cut(s)	35, 54, 570, 812
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	5 cut(s)	33, 144, 175, 301, 379
BstBAI	YACGTR	2 cut(s)	623, 692
BstC8I	GCNNGC	2 cut(s)	158, 201
BstDEI	CTNAG	4 cut(s)	190, 269, 351, 847
BstFNI	CGCG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	486, 556
BstKTI	GATC	4 cut(s)	38, 57, 573, 815
BstMAI	GTCTC	2 cut(s)	721, 850
BstMBI	GATC	4 cut(s)	35, 54, 570, 812
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 248, 794
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	451, 742
BstSFI	CTRYAG	3 cut(s)	246, 681, 804
BstSNI	TACGTA	1 cut(s)	692
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	812
BstYI	RGATCY	1 cut(s)	812
BstZI	CGGCCG	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	150, 213
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	2 cut(s)	158, 201
CfoI	GCGC	2 cut(s)	486, 556
Cfr10I	RCCGGY	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	115, 644, 689
CviAII	CATG	2 cut(s)	157, 314
CviQI	GTAC	3 cut(s)	115, 644, 689
DdeI	CTNAG	4 cut(s)	190, 269, 351, 847
DpnI	GATC	4 cut(s)	37, 56, 572, 814
DpnII	GATC	4 cut(s)	35, 54, 570, 812
EaeI	YGGCCR	2 cut(s)	148, 211
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	5 cut(s)	33, 144, 175, 301, 379
EarI	CTCTTC	5 cut(s)	33, 144, 175, 301, 379
EciI	GGCGGA	2 cut(s)	613, 642
EclXI	CGGCCG	1 cut(s)	148
Eco105I	TACGTA	1 cut(s)	692
Eco47III	AGCGCT	1 cut(s)	555
Eco52I	CGGCCG	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	160, 317
FatI	CATG	2 cut(s)	156, 313
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	151, 154, 249
Fsp4HI	GCNGC	3 cut(s)	151, 154, 249
FspBI	CTAG	2 cut(s)	345, 579
GlaI	GCGC	2 cut(s)	485, 555
GluI	GCNGC	3 cut(s)	151, 154, 249
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	150, 213
HapII	CCGG	3 cut(s)	130, 147, 743
HhaI	GCGC	2 cut(s)	486, 556
Hin1II	CATG	2 cut(s)	160, 317
Hin6I	GCGC	2 cut(s)	484, 554
HinP1I	GCGC	2 cut(s)	484, 554
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	471
HpaII	CCGG	3 cut(s)	130, 147, 743
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	35, 193, 658
Hpy188III	TCNNGA	3 cut(s)	45, 130, 612
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	51, 330, 786
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	622, 691
HpyCH4V	TGCA	3 cut(s)	248, 371, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 248, 794
HpyF3I	CTNAG	4 cut(s)	190, 269, 351, 847
HpySE526I	ACGT	2 cut(s)	622, 691
Hsp92II	CATG	2 cut(s)	160, 317
HspAI	GCGC	2 cut(s)	484, 554
Kpn2I	TCCGGA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	35, 54, 570, 812
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	165, 710
Lsp1109I	GCAGC	1 cut(s)	260
MabI	ACCWGGT	1 cut(s)	451
MaeI	CTAG	2 cut(s)	345, 579
MaeII	ACGT	2 cut(s)	622, 691
MaeIII	GTNAC	2 cut(s)	609, 667
MalI	GATC	4 cut(s)	37, 56, 572, 814
MbiI	CCGCTC	1 cut(s)	768
MboI	GATC	4 cut(s)	35, 54, 570, 812
MboII	GAAGA	8 cut(s)	20, 131, 162, 165, 288, 396, 504, 539
MflI	RGATCY	1 cut(s)	812
MluCI	AATT	2 cut(s)	651, 836
MmeI	TCCRAC	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	129
MseI	TTAA	1 cut(s)	20
MspI	CCGG	3 cut(s)	130, 147, 743
MspR9I	CCNGG	2 cut(s)	453, 744
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	205, 248, 794
NciI	CCSGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	4 cut(s)	35, 54, 570, 812
NlaIII	CATG	2 cut(s)	160, 317
NlaIV	GGNNCC	2 cut(s)	198, 814
NmeAIII	GCCGAG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	609
NspI	RCATGY	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	471
Pfl23II	CGTACG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	152, 155, 250
PmaCI	CACGTG	1 cut(s)	623
PmlI	CACGTG	1 cut(s)	623
Ppu21I	YACGTR	2 cut(s)	623, 692
Psp6I	CCWGG	1 cut(s)	451
PspCI	CACGTG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	451
PspLI	CGTACG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	198, 814
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	812
RsaI	GTAC	3 cut(s)	116, 645, 690
RsaNI	GTAC	3 cut(s)	115, 644, 689
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	3 cut(s)	151, 154, 249
Sau3AI	GATC	4 cut(s)	35, 54, 570, 812
ScrFI	CCNGG	2 cut(s)	453, 744
SexAI	ACCWGGT	1 cut(s)	451
SfcI	CTRYAG	3 cut(s)	246, 681, 804
SnaBI	TACGTA	1 cut(s)	692
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	2 cut(s)	651, 836
SsiI	CCGC	6 cut(s)	105, 151, 154, 598, 627, 768
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	345, 579
StyD4I	CCNGG	2 cut(s)	451, 742
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	625, 694
TaqI	TCGA	2 cut(s)	53, 232
TasI	AATT	2 cut(s)	651, 836
TauI	GCSGC	2 cut(s)	153, 156
TfiI	GAWTC	1 cut(s)	471
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	3 cut(s)	302, 512, 774
XapI	RAATTY	1 cut(s)	836
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	2 cut(s)	345, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.