Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Forward (+)

11231634 .. 11234321

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTGGGAGTTTTTCCCAGAATTCCGGTACCAAATGTTCAAGAACTGGTTAGGAATGATCCTTTACAGGTCCCCAAAAGATATATTAGGAACGAAGAAGACATGCCGAAGGAAGCAGATCTTTGTCATCATCTTTCTTCTGAGATTTCTGTCATTGATGTTTCTTTGCTCTCCAAAGGGGACAACGAGGAGCTTCGCAAACTCGACCTGGCTTGCAAAGAATGGGGATTCTTTGTGGAACACTCTTTGAGAGGGTCTGTTCGACTTCTAGGTTTAGGGGTTGTGCAACAGCTTCCGAGTTACATAAATATTGCAGATGATAAATCATGGAGTAGAAACAGAAGGAAACAGAAGGAGGCTATTGAGATATATGGTAGTGAAGTTAGACATGTTGCAGAGGAGCTCCTGAGATCTCTATCTTTGATTATGGGGATGGAGAAGGATGTTCTTGGACTACATCAAGAGCTGGCTCAATATCTGTCTGTGGCCTATTATCCTTCATGCTCTATGCCTGATAAAATATGGAGTAATGGGATGTACAAGAGCATTGAGCACAGAGTTGTGACAAATGAAAGCAAAGCAAGGTTATCTTATGCATCATTGTATGAAGATGCAGAAATTGCGCCCTTTGATCAAATGGTACTCAACTCTCCAGAGTCCACTCAGATATACAAGAAAGTCAGATATGGAGAATATTTGAAGGAAATTACCTCGAAGAAGAAATTTTATGGGAAAAAACAAATTGAATTTGCCAAGATTGGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0030895 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050821 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

255

Amino Acids

29.35

Weight (kDa)

7.02

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	21, 722, 746
AfaI	GTAC	3 cut(s)	30, 539, 642
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	41, 700, 746
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	193, 292, 403, 466
AluI	AGCT	4 cut(s)	193, 292, 403, 466
Alw21I	GWGCWC	2 cut(s)	405, 555
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	486
ApoI	RAATTY	3 cut(s)	21, 722, 746
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	405, 555
BccI	CCATC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	631
BfaI	CTAG	1 cut(s)	269
BglII	AGATCT	2 cut(s)	118, 410
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	30, 72
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	601, 605
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	438, 448, 540
BseJI	GATNNNNATC	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	132, 398, 677
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	203, 413
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	405, 555
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	56, 194
BsmFI	GGGAC	2 cut(s)	56, 194
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	405, 555
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	58, 118, 410, 631
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	3 cut(s)	133, 399, 676
BspLI	GGNNCC	2 cut(s)	30, 72
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	58, 118, 410, 631
Bst2UI	CCWGG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	214, 468
BstDEI	CTNAG	3 cut(s)	141, 407, 663
BstF5I	GGATG	3 cut(s)	438, 448, 540
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	4 cut(s)	61, 121, 413, 634
BstMBI	GATC	4 cut(s)	58, 118, 410, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	2 cut(s)	106, 392
BstSCI	CCNGG	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	118, 410
BstYI	RGATCY	2 cut(s)	118, 410
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	438, 448, 540
Cac8I	GCNNGC	2 cut(s)	214, 468
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	29, 538, 641
CviAII	CATG	4 cut(s)	103, 327, 389, 501
CviJI	RGCY	8 cut(s)	193, 212, 292, 359, 403, 466, 470, 488
CviKI_1	RGCY	8 cut(s)	193, 212, 292, 359, 403, 466, 470, 488
CviQI	GTAC	3 cut(s)	29, 538, 641
DdeI	CTNAG	3 cut(s)	141, 407, 663
DpnI	GATC	4 cut(s)	60, 120, 412, 633
DpnII	GATC	4 cut(s)	58, 118, 410, 631
Ecl136II	GAGCTC	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	4 cut(s)	106, 330, 392, 504
FalI	AAGNNNNNCTT	4 cut(s)	105, 137, 574, 606
FaqI	GGGAC	2 cut(s)	56, 194
FatI	CATG	4 cut(s)	102, 326, 388, 500
FbaI	TGATCA	1 cut(s)	631
FokI	GGATG	3 cut(s)	445, 455, 547
FriOI	GRGCYC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	624
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	4 cut(s)	106, 330, 392, 504
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HinfI	GANTC	2 cut(s)	228, 656
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	4 cut(s)	142, 297, 666, 683
Hpy188III	TCNNGA	4 cut(s)	41, 406, 461, 653
Hpy8I	GTNNAC	1 cut(s)	660
HpyAV	CCTTC	6 cut(s)	103, 336, 346, 433, 507, 694
HpyCH4V	TGCA	6 cut(s)	216, 286, 314, 395, 596, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	141, 407, 663
Hsp92II	CATG	4 cut(s)	106, 330, 392, 504
HspAI	GCGC	1 cut(s)	623
KpnI	GGTACC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	58, 118, 410, 631
LmnI	GCTCC	3 cut(s)	190, 400, 408
LweI	GCATC	2 cut(s)	601, 605
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	299, 562
MalI	GATC	4 cut(s)	60, 120, 412, 633
MboI	GATC	4 cut(s)	58, 118, 410, 631
MboII	GAAGA	6 cut(s)	107, 110, 129, 620, 727, 730
MflI	RGATCY	2 cut(s)	118, 410
MhlI	GDGCHC	2 cut(s)	405, 555
MluCI	AATT	6 cut(s)	21, 618, 705, 722, 741, 746
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	5 cut(s)	181, 245, 349, 391, 721
Mph1103I	ATGCAT	1 cut(s)	598
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	4 cut(s)	58, 118, 410, 631
NlaIII	CATG	4 cut(s)	106, 330, 392, 504
NlaIV	GGNNCC	2 cut(s)	30, 72
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	106, 392
PciI	ACATGT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	70
PscI	ACATGT	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	30, 72
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	21, 53
PsuI	RGATCY	2 cut(s)	118, 410
RsaI	GTAC	3 cut(s)	30, 539, 642
RsaNI	GTAC	3 cut(s)	29, 538, 641
SacI	GAGCTC	1 cut(s)	405
Sau3AI	GATC	4 cut(s)	58, 118, 410, 631
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	405, 555
SetI	ASST	9 cut(s)	72, 195, 210, 274, 294, 405, 468, 587, 713
SfaNI	GCATC	2 cut(s)	601, 605
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	6 cut(s)	21, 618, 705, 722, 741, 746
SspI	AATATT	2 cut(s)	310, 695
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	207
TaqI	TCGA	3 cut(s)	204, 262, 713
TasI	AATT	6 cut(s)	21, 618, 705, 722, 741, 746
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	489, 585, 621
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	3 cut(s)	21, 722, 746
XceI	RCATGY	2 cut(s)	106, 392
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.