Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Reverse (-)

19629278 .. 19634042

Gene Structure 4765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43954

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGCCGAAAACAAGGGAAAATGCTGCCGGAGATGCACCTGAAAGGCCTGTAGAATCCGAGGAGCAGGTGGACCTTGATGGAGACAATGATCCTGAGGAAACAATAGAAGAAGAGGTTGAGTATGAAGAAGTAGAGGAAGAGGAGGAAGTGGAAGAAGAAGAGGAAGAGGAAGAGGAAGATCCAGAAGAGGAGGAAGAGGATGAAAACAAGGGAGGTGATATAGAATCTAATGGGAAAAAAAGCGCAGATGGTGATGTAGAGATGAAAGTTACAGACGCAGAGGAGGAAGAGGATAAAAAGAAACATGCGGAGCTTCTTGCACTCCCTCAGCATGGGTCAGAGGTGTATCTTGGTGGCATTCCTCATGATGCATCTGAAGAGGATTTAAGGGGCTTTTGTGAATCTATTGGGGAAGTGACTGAGGTTAGGATAATGAAGGGAAAAGATTCGGGTGAGGCCAAAGGTTATGCTTTTGTAACATTCAGAAACAAGGAACTAGCTTCTAAGGCAATAGAGGAACTGAATAACTCTCAATTAAAGGGAAAAAAGATCAAGTGTTCTACCTCGCAAGCCAAGCATCGTCTGTTCATTGGAAATGTTCCTAGAACTTGGGGAGAGGATGATATGAAGAAAGCTGTAACAGATACAGGGCCAGGAGTTATCTCTGTGGAACTGTTGAAGGACCCACAAAACTCCAGTCGGAACCGTGGATTTGCTTTCATCGAGTATTATAATCATGCATGTGCAGACTACTCTAGACAAAAGATGTCAACCTCAAAGTTCAAGCTTGATATTAATGCTCCAACTGTGAGTTGGGCGGATCCCAAGAATGCAGAATCCTCTGCCTCCTCTCAGGTTAAGGCAGTGTATGTCAAGAATCTACCAAAAGACATTACTCAGGATGATCTAAAAGAGCTTTTTGACCATCATGGAAAGATCACAAAGGTCGTTCTCCCACCTGCAAAAGCCGGACAGGAAAGGAGCAGATTTGGTTTTGTGCACTTTGCAGACAGGTCCAGTGCCATGAAGGCATTGAAGAACACTGAAAAATATGAAATTGGTGGTCAAGTTTTGGAGTGTTCTTTGGCAAAGCCTCAAGCAGATCAGAAATCTTCTGGTGCATCAAATCATCAGAAGTCAGCCCCACTTCCAACCTACCCACCACATATTGGTTATGGCATGGTAGGGACTGGGCCATATGGTCCCTTGGGTGCTGGATATGGTGGTGGTGCAGGATTTTCACAACCACTGATCTATGGGAGGGGACCCACTCCTGCTGGCATGGCGATGATGCCTATGCTTTTGCCTGATGGAAGAATTGGATATGTCCTGCAACAGCCTGGAGTACAACCTCATGCCCCTCCACCGCAGTCCCGAGGTGGAAGAAGTGGTGGCAGCTCAAGTGGTGGAAGGCGCAGCAATGACAGCAACCGTGGCCGTAGTCGTTACAACCCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0030895 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050821 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

486

Amino Acids

53.16

Weight (kDa)

4.91

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	115 - 185	8.4e-19	RNA recognition motif
RRM_1	PF00076	195 - 261	2.3e-07	RNA recognition motif
RRM_10	PF22976	287 - 353	6.6e-06	RRM domain
RRM_1	PF00076	289 - 358	3.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AarI	CACCTGC	2 cut(s)	55, 967
Acc36I	ACCTGC	2 cut(s)	55, 967
AccB7I	CCANNNNNTGG	1 cut(s)	1169
AciI	CCGC	3 cut(s)	308, 818, 1367
AclWI	GGATC	4 cut(s)	83, 173, 815, 828
AcoI	YGGCCR	1 cut(s)	1435
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	1347
AfiI	CCNNNNNNNGG	2 cut(s)	332, 1169
AgsI	TTSAA	3 cut(s)	679, 784, 1036
AjnI	CCWGG	2 cut(s)	652, 1339
AluBI	AGCT	6 cut(s)	313, 500, 635, 787, 916, 1398
AluI	AGCT	6 cut(s)	313, 500, 635, 787, 916, 1398
Alw21I	GWGCWC	1 cut(s)	1002
Alw26I	GTCTC	1 cut(s)	75
Alw44I	GTGCAC	1 cut(s)	998
AlwI	GGATC	4 cut(s)	83, 173, 815, 828
Ama87I	CYCGRG	1 cut(s)	1374
AoxI	GGCC	5 cut(s)	44, 456, 650, 1193, 1435
ApaLI	GTGCAC	1 cut(s)	998
ApeKI	GCWGC	3 cut(s)	23, 1395, 1416
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	245, 1416
AspS9I	GGNCC	7 cut(s)	70, 650, 682, 1014, 1193, 1202, 1265
AsuHPI	GGTGA	3 cut(s)	227, 263, 464
AvaI	CYCGRG	1 cut(s)	1374
AvaII	GGWCC	5 cut(s)	70, 682, 1014, 1202, 1265
AxyI	CCTNAGG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	1002
BamHI	GGATCC	1 cut(s)	820
Bbv12I	GWGCWC	1 cut(s)	1002
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	10, 1407, 1428
BccI	CCATC	4 cut(s)	71, 242, 933, 1304
BceAI	ACGGC	1 cut(s)	1422
BciT130I	CCWGG	2 cut(s)	654, 1341
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	3 cut(s)	497, 603, 756
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	2 cut(s)	55, 967
BglI	GCCNNNNNGGC	1 cut(s)	1028
BisI	GCNGC	3 cut(s)	24, 1396, 1417
BlsI	GCNGC	3 cut(s)	25, 1397, 1418
Bme1390I	CCNGG	2 cut(s)	654, 1341
Bme18I	GGWCC	5 cut(s)	70, 682, 1014, 1202, 1265
BmeT110I	CYCGRG	1 cut(s)	1374
BmgT120I	GGNCC	7 cut(s)	70, 650, 682, 1014, 1193, 1202, 1265
BmiI	GGNNCC	6 cut(s)	684, 704, 822, 1204, 1266, 1267
BmrFI	CCNGG	2 cut(s)	654, 1341
BmrI	ACTGGG	1 cut(s)	1200
BmsI	GCATC	6 cut(s)	22, 358, 380, 586, 1130, 1281
BmuI	ACTGGG	1 cut(s)	1200
BpmI	CTGGAG	2 cut(s)	679, 1362
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	1080, 1384
BsaJI	CCNNGG	5 cut(s)	57, 706, 1206, 1375, 1432
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 1169
Bse1I	ACTGG	3 cut(s)	696, 1017, 1195
Bse21I	CCTNAGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	1426
BseBI	CCWGG	2 cut(s)	654, 1341
BseDI	CCNNGG	5 cut(s)	57, 706, 1206, 1375, 1432
BseGI	GGATG	3 cut(s)	205, 625, 907
BseLI	CCNNNNNNNGG	2 cut(s)	332, 1169
BseMI	GCAATG	1 cut(s)	1426
BseMII	CTCAG	5 cut(s)	84, 341, 411, 866, 911
BseNI	ACTGG	3 cut(s)	696, 1017, 1195
BseRI	GAGGAG	5 cut(s)	74, 155, 203, 296, 838
BseSI	GKGCMC	1 cut(s)	1002
BseXI	GCAGC	3 cut(s)	10, 1407, 1428
BsgI	GTGCAG	2 cut(s)	765, 1251
BshFI	GGCC	5 cut(s)	46, 458, 652, 1195, 1437
BsiHKAI	GWGCWC	1 cut(s)	1002
BsiHKCI	CYCGRG	1 cut(s)	1374
BsiSI	CCGG	2 cut(s)	27, 969
BslFI	GGGAC	4 cut(s)	1188, 1201, 1278, 1357
BslI	CCNNNNNNNGG	2 cut(s)	332, 1169
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	4 cut(s)	1188, 1201, 1278, 1357
BsmI	GAATGC	2 cut(s)	357, 835
BsnI	GGCC	5 cut(s)	46, 458, 652, 1195, 1437
BsoBI	CYCGRG	1 cut(s)	1374
Bsp1286I	GDGCHC	1 cut(s)	1002
Bsp143I	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
BspACI	CCGC	3 cut(s)	308, 818, 1367
BspANI	GGCC	5 cut(s)	46, 458, 652, 1195, 1437
BspCNI	CTCAG	5 cut(s)	85, 340, 412, 865, 910
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	6 cut(s)	684, 704, 822, 1204, 1266, 1267
BspMI	ACCTGC	2 cut(s)	55, 967
BspPI	GGATC	4 cut(s)	83, 173, 815, 828
BsrDI	GCAATG	1 cut(s)	1426
BsrI	ACTGG	3 cut(s)	696, 1017, 1195
BssECI	CCNNGG	5 cut(s)	57, 706, 1206, 1375, 1432
BssMI	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	2 cut(s)	654, 1341
Bst4CI	ACNGT	4 cut(s)	675, 707, 808, 1433
Bst6I	CTCTTC	9 cut(s)	105, 132, 153, 159, 165, 180, 189, 282, 372
BstC8I	GCNNGC	2 cut(s)	570, 1279
BstDEI	CTNAG	6 cut(s)	93, 327, 420, 504, 852, 897
BstDSI	CCRYGG	2 cut(s)	706, 1432
BstF5I	GGATG	3 cut(s)	205, 625, 907
BstHHI	GCGC	2 cut(s)	245, 1416
BstKTI	GATC	8 cut(s)	91, 181, 552, 823, 907, 939, 1105, 1254
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 506, 574, 1028, 1283, 1425, 1434
BstNI	CCWGG	2 cut(s)	654, 1341
BstNSI	RCATGY	2 cut(s)	308, 744
BstSCI	CCNGG	2 cut(s)	652, 1339
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	1002
BstV1I	GCAGC	3 cut(s)	10, 1407, 1428
BstX2I	RGATCY	2 cut(s)	178, 820
BstYI	RGATCY	2 cut(s)	178, 820
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	5 cut(s)	46, 458, 652, 1195, 1437
BtgI	CCRYGG	2 cut(s)	706, 1432
BtgZI	GCGATG	1 cut(s)	1301
BtsCI	GGATG	3 cut(s)	205, 625, 907
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	4 cut(s)	870, 1024, 1041, 1247
BveI	ACCTGC	2 cut(s)	55, 967
Cac8I	GCNNGC	2 cut(s)	570, 1279
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	2 cut(s)	245, 1416
Cfr13I	GGNCC	7 cut(s)	70, 650, 682, 1014, 1193, 1202, 1265
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	1346
CviQI	GTAC	1 cut(s)	1346
DdeI	CTNAG	6 cut(s)	93, 327, 420, 504, 852, 897
DpnI	GATC	8 cut(s)	90, 180, 551, 822, 906, 938, 1104, 1253
DpnII	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
EaeI	YGGCCR	1 cut(s)	1435
Eam1104I	CTCTTC	9 cut(s)	105, 132, 153, 159, 165, 180, 189, 282, 372
EarI	CTCTTC	9 cut(s)	105, 132, 153, 159, 165, 180, 189, 282, 372
EciI	GGCGGA	1 cut(s)	833
Eco130I	CCWWGG	1 cut(s)	1206
Eco147I	AGGCCT	1 cut(s)	46
Eco47I	GGWCC	5 cut(s)	70, 682, 1014, 1202, 1265
Eco57I	CTGAAG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	1374
EcoO109I	RGGNCCY	2 cut(s)	682, 1265
EcoRII	CCWGG	2 cut(s)	652, 1339
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT22I	ATGCAT	2 cut(s)	373, 742
ErhI	CCWWGG	1 cut(s)	1206
FaqI	GGGAC	4 cut(s)	1188, 1201, 1278, 1357
FauNDI	CATATG	1 cut(s)	1198
Fnu4HI	GCNGC	3 cut(s)	24, 1396, 1417
FokI	GGATG	3 cut(s)	212, 632, 914
Fsp4HI	GCNGC	3 cut(s)	24, 1396, 1417
FspBI	CTAG	3 cut(s)	497, 603, 756
GlaI	GCGC	2 cut(s)	244, 1415
GluI	GCNGC	3 cut(s)	24, 1396, 1417
GsuI	CTGGAG	2 cut(s)	679, 1362
HaeIII	GGCC	5 cut(s)	46, 458, 652, 1195, 1437
HapII	CCGG	2 cut(s)	27, 969
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	245, 1416
Hin6I	GCGC	2 cut(s)	243, 1414
HinP1I	GCGC	2 cut(s)	243, 1414
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	6 cut(s)	53, 224, 401, 446, 836, 877
HpaII	CCGG	2 cut(s)	27, 969
HphI	GGTGA	3 cut(s)	227, 263, 464
Hpy166II	GTNNAC	3 cut(s)	70, 771, 1000
Hpy188I	TCNGA	7 cut(s)	58, 340, 376, 485, 702, 1107, 1134
Hpy188III	TCNNGA	7 cut(s)	92, 182, 365, 756, 874, 899, 1374
Hpy8I	GTNNAC	3 cut(s)	70, 771, 1000
HpyAV	CCTTC	4 cut(s)	430, 673, 1021, 1404
HpyCH4III	ACNGT	4 cut(s)	675, 707, 808, 1433
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 506, 574, 1028, 1283, 1425, 1434
HpyF3I	CTNAG	6 cut(s)	93, 327, 420, 504, 852, 897
HspAI	GCGC	2 cut(s)	243, 1414
KflI	GGGWCCC	1 cut(s)	1265
Kzo9I	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
LmnI	GCTCC	4 cut(s)	61, 310, 805, 981
Lsp1109I	GCAGC	3 cut(s)	10, 1407, 1428
LweI	GCATC	6 cut(s)	22, 358, 380, 586, 1130, 1281
MaeI	CTAG	3 cut(s)	497, 603, 756
MaeIII	GTNAC	5 cut(s)	268, 415, 475, 637, 1445
MalI	GATC	8 cut(s)	90, 180, 551, 822, 906, 938, 1104, 1253
MboI	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
MflI	RGATCY	2 cut(s)	178, 820
MhlI	GDGCHC	1 cut(s)	1002
MluCI	AATT	3 cut(s)	533, 1056, 1317
MmeI	TCCRAC	3 cut(s)	680, 827, 1175
Mph1103I	ATGCAT	2 cut(s)	373, 742
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	5 cut(s)	386, 536, 795, 858, 1459
MslI	CAYNNNNRTG	2 cut(s)	741, 1286
MspI	CCGG	2 cut(s)	27, 969
MspR9I	CCNGG	2 cut(s)	654, 1341
Mva1269I	GAATGC	2 cut(s)	357, 835
MvaI	CCWGG	2 cut(s)	654, 1341
MwoI	GCNNNNNNNGC	7 cut(s)	32, 506, 574, 1028, 1283, 1425, 1434
NdeI	CATATG	1 cut(s)	1198
NdeII	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
NlaIV	GGNNCC	6 cut(s)	684, 704, 822, 1204, 1266, 1267
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	2 cut(s)	373, 742
NspI	RCATGY	2 cut(s)	308, 744
PagI	TCATGA	1 cut(s)	364
PaqCI	CACCTGC	2 cut(s)	55, 967
PceI	AGGCCT	1 cut(s)	46
PctI	GAATGC	2 cut(s)	357, 835
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	6 cut(s)	53, 224, 401, 446, 836, 877
PflMI	CCANNNNNTGG	1 cut(s)	1169
PkrI	GCNGC	3 cut(s)	25, 1397, 1418
PpuMI	RGGWCCY	2 cut(s)	682, 1265
PshBI	ATTAAT	1 cut(s)	795
PsiI	TTATAA	1 cut(s)	732
Psp5II	RGGWCCY	2 cut(s)	682, 1265
Psp6I	CCWGG	2 cut(s)	652, 1339
PspGI	CCWGG	2 cut(s)	652, 1339
PspN4I	GGNNCC	6 cut(s)	684, 704, 822, 1204, 1266, 1267
PspPI	GGNCC	7 cut(s)	70, 650, 682, 1014, 1193, 1202, 1265
PspPPI	RGGWCCY	2 cut(s)	682, 1265
PsuI	RGATCY	2 cut(s)	178, 820
RsaI	GTAC	1 cut(s)	1347
RsaNI	GTAC	1 cut(s)	1346
RseI	CAYNNNNRTG	2 cut(s)	741, 1286
SaqAI	TTAA	5 cut(s)	386, 536, 795, 858, 1459
SatI	GCNGC	3 cut(s)	24, 1396, 1417
Sau3AI	GATC	8 cut(s)	88, 178, 549, 820, 904, 936, 1102, 1251
Sau96I	GGNCC	7 cut(s)	70, 650, 682, 1014, 1193, 1202, 1265
ScrFI	CCNGG	2 cut(s)	654, 1341
SduI	GDGCHC	1 cut(s)	1002
SfaNI	GCATC	6 cut(s)	22, 358, 380, 586, 1130, 1281
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	5 cut(s)	70, 682, 1014, 1202, 1265
SmiMI	CAYNNNNRTG	2 cut(s)	741, 1286
SmlI	CTYRAG	2 cut(s)	1095, 1399
SmoI	CTYRAG	2 cut(s)	1095, 1399
Sse9I	AATT	3 cut(s)	533, 1056, 1317
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	3 cut(s)	308, 818, 1367
SspMI	CTAG	3 cut(s)	497, 603, 756
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	652, 1339
StyI	CCWWGG	1 cut(s)	1206
TaaI	ACNGT	4 cut(s)	675, 707, 808, 1433
TaqI	TCGA	1 cut(s)	723
TasI	AATT	3 cut(s)	533, 1056, 1317
TatI	WGTACW	1 cut(s)	1345
TfiI	GAWTC	6 cut(s)	53, 224, 401, 446, 836, 877
Tru1I	TTAA	5 cut(s)	386, 536, 795, 858, 1459
Tru9I	TTAA	5 cut(s)	386, 536, 795, 858, 1459
TscAI	CASTG	4 cut(s)	870, 1024, 1048, 1254
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	23, 1395, 1416
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	9 cut(s)	138, 216, 278, 449, 577, 641, 709, 1040, 1068
TspRI	CASTG	4 cut(s)	870, 1024, 1048, 1254
Van91I	CCANNNNNTGG	1 cut(s)	1169
VneI	GTGCAC	1 cut(s)	998
VpaK11BI	GGWCC	5 cut(s)	70, 682, 1014, 1202, 1265
VspI	ATTAAT	1 cut(s)	795
XbaI	TCTAGA	1 cut(s)	755
XceI	RCATGY	2 cut(s)	308, 744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	810
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	3 cut(s)	497, 603, 756
Zsp2I	ATGCAT	2 cut(s)	373, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.