Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Reverse (-)

42161214 .. 42169158

Gene Structure 7945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGCCAAGGGAAAAGACAAATGCTTCATCAGTTGAACCTGAAAAGTCAATAGCATCTGATGAGAAGGTTGGTATTGATGAAGACAATGATCCTGATGAGGCAATGGATGAAGAGGTTGAGTATGAAGAGGTTGAGGAAGAAGAAGAAGTAGAAGAAATAGAAGAAGAAGTGGAAGAAGAAGAGGAAGAAGAGGAGGAAGAGGAAGAAGAGGAGGAGGTAGAAGAAGAGGTGGATGATGAAGATGCTAATATTGCCACTGGAACTGATGTCAAGAACTCAGAGAGCAGTGAAGAGGAGAAGAAAAAACATACTGAACTTCTTGCCCTTCCTCCACATGGTTCTGAAGTTTACATTGGTGGTATTCCTCATGATGCTATTCAGGAGGAGTTAAGGGTCTTTTGTGAAGCTGTAGGAGAAGTTACAGAGGTTCGGATTATGAAGGGAAAAGATTTAGGTGACAATAAGGGCTTTGCATTTGTGACGTTCAGAAACATGGAGATGGCTTCTAATGCTATTGATGAATTGAATAATACCGAATTTAAGGGTAAAAGAATAAAATGTTCAACATCTAAAGCAAAGCACCGTTTGTTCATCGGTAATGTTCCAAGGAGTTGGGGAGAAGAAGATCTGAGGAAGGTTGTGATGGAGGTTGGTCCTGGAGTTTCTGGTATAGAACTGGTCAAGGATATGAAGAACACAAGCAATAACCGGGGGTTTGCTTTCATTGACTACTATAACCATGCATGTGCTGACTATTCAAGGCAAAAAATGATGGACTCCAAATTTAAGCTGGATAATAATGCCCCAACAGTGAGCTGGGCAGACCCTAAAAACGCGGAGTCTTCTGCTGCTTCTCAGGTGAAGGCGGTTTATGTAAAGAATTTACCCAAAACTGTGACCCAAGAACAGTTAAAGAAGCTATTTGAACACCACGGGAAAATCACGAAAGTGGTTCTGCCAGCTTCAAAATCCGGACAGGAGAGGAATAGAATTGGTTTTGTACATTTTTCAGAGAGGTCAAGTGCTATGAAAGCATTGAAGAACACTGAAAATTATGAACTTGATGGCCAGCTGTTGGAGTGCTCTCTTGCAAGGCCACAGGCAGATCAAAAGTCCGGTGGATCGAATTCCCAGAGGTCAGGGTTGATTGCTAGTTATCCAGCTCGTGCTCTTTATGGTGTGCCTGGGGGTGCCTATGGGGCTCTTGGTGCAGGATATGGTGCTGCAGGTTTTGCACAGCCTTTGATGCCTGGACCAGGACCGGCTCCTGCTGGCATGGCAATGATGCCGATGCTTCTGCCTGATGGACGGATTGGATATGTTTTGCAACAACCAGGGCCTCAGCCATACCAACACCCACACCCACACCCGCACCCGCACCCGCACCCTCACCCACACCCACACACGCCGCATGCACATCAGCGAAATAGTGGCCGGGGTGGTGGTGGGAGCGGTAGCAAGAGTAGCGGTGGTTCAAATAAGGGAAGGCACAACCATGATGCTGGGCATGGGCGCAGGTTTCACCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0071704 GO:0080090 GO:0090304 GO:0097452 GO:1901360 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

510

Amino Acids

56.15

Weight (kDa)

5.11

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 186	2e-17	RNA recognition motif
RRM_1	PF00076	196 - 262	9.3e-09	RNA recognition motif
RRM_10	PF22976	288 - 355	5.2e-06	RRM domain
RRM_1	PF00076	290 - 359	3.7e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1217, 1506
AccB1I	GGYRCC	1 cut(s)	1190
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccBSI	CCGCTC	1 cut(s)	1452
AccII	CGCG	1 cut(s)	836
AccIII	TCCGGA	1 cut(s)	971
AciI	CCGC	8 cut(s)	836, 866, 1370, 1376, 1382, 1409, 1452, 1467
AclWI	GGATC	2 cut(s)	83, 1129
AcoI	YGGCCR	2 cut(s)	1066, 1432
AcsI	RAATTY	4 cut(s)	536, 782, 880, 1126
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	3 cut(s)	335, 1075, 1256
AgsI	TTSAA	8 cut(s)	35, 526, 564, 759, 926, 966, 1039, 1476
AjnI	CCWGG	5 cut(s)	655, 1183, 1249, 1255, 1333
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AleI	CACNNNNGTG	1 cut(s)	947
AluBI	AGCT	7 cut(s)	407, 790, 816, 919, 962, 1072, 1163
AluI	AGCT	7 cut(s)	407, 790, 816, 919, 962, 1072, 1163
Alw21I	GWGCWC	2 cut(s)	1085, 1171
AlwI	GGATC	2 cut(s)	83, 1129
Aor13HI	TCCGGA	1 cut(s)	971
AoxI	GGCC	4 cut(s)	1066, 1094, 1337, 1432
ApeKI	GCWGC	2 cut(s)	848, 1223
ApoI	RAATTY	4 cut(s)	536, 782, 880, 1126
AspLEI	GCGC	1 cut(s)	1515
AspS9I	GGNCC	4 cut(s)	653, 1253, 1259, 1337
AsuC2I	CCSGG	2 cut(s)	710, 1436
AsuHPI	GGTGA	4 cut(s)	467, 871, 1382, 1514
AvaII	GGWCC	3 cut(s)	653, 1253, 1259
BalI	TGGCCA	1 cut(s)	1068
BanI	GGYRCC	1 cut(s)	1190
BanII	GRGCYC	1 cut(s)	1204
BauI	CACGAG	1 cut(s)	1164
BbsI	GAAGAC	2 cut(s)	87, 834
Bbv12I	GWGCWC	2 cut(s)	1085, 1171
BbvCI	CCTCAGC	1 cut(s)	1341
BbvI	GCAGC	2 cut(s)	835, 1210
BccI	CCATC	5 cut(s)	493, 637, 766, 1058, 1298
BcgI	CGANNNNNNTGC	2 cut(s)	1279, 1313
BciT130I	CCWGG	5 cut(s)	657, 1185, 1251, 1257, 1335
BcnI	CCSGG	2 cut(s)	710, 1436
BfaI	CTAG	1 cut(s)	1152
BfmI	CTRYAG	2 cut(s)	408, 1224
BfuAI	ACCTGC	2 cut(s)	1217, 1506
BglI	GCCNNNNNGGC	1 cut(s)	1199
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	3 cut(s)	849, 1224, 1409
BlsI	GCNGC	3 cut(s)	850, 1225, 1410
Bme1390I	CCNGG	7 cut(s)	657, 710, 1185, 1251, 1257, 1335, 1436
Bme18I	GGWCC	3 cut(s)	653, 1253, 1259
BmgT120I	GGNCC	4 cut(s)	653, 1253, 1259, 1337
BmiI	GGNNCC	2 cut(s)	1192, 1266
BmrFI	CCNGG	7 cut(s)	657, 710, 1185, 1251, 1257, 1335, 1436
BmsI	GCATC	7 cut(s)	62, 232, 361, 1236, 1275, 1281, 1489
BpiI	GAAGAC	2 cut(s)	87, 834
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	1341
BpuMI	CCSGG	2 cut(s)	710, 1436
BsaJI	CCNNGG	7 cut(s)	5, 605, 709, 931, 1184, 1334, 1435
BsaWI	WCCGGW	2 cut(s)	971, 1115
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 1075, 1256
Bse118I	RCCGGY	1 cut(s)	1261
Bse1I	ACTGG	2 cut(s)	262, 681
Bse3DI	GCAATG	2 cut(s)	108, 1287
BseAI	TCCGGA	1 cut(s)	971
BseBI	CCWGG	5 cut(s)	657, 1185, 1251, 1257, 1335
BseDI	CCNNGG	7 cut(s)	5, 605, 709, 931, 1184, 1334, 1435
BseGI	GGATG	2 cut(s)	112, 238
BseLI	CCNNNNNNNGG	3 cut(s)	335, 1075, 1256
BseMI	GCAATG	2 cut(s)	108, 1287
BseMII	CTCAG	4 cut(s)	291, 620, 869, 1355
BseNI	ACTGG	2 cut(s)	262, 681
BseRI	GAGGAG	5 cut(s)	206, 224, 227, 308, 398
BseXI	GCAGC	2 cut(s)	835, 1210
BseYI	CCCAGC	2 cut(s)	816, 1502
BsgI	GTGCAG	1 cut(s)	1230
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	4 cut(s)	1068, 1096, 1339, 1434
BshNI	GGYRCC	1 cut(s)	1190
BsiHKAI	GWGCWC	2 cut(s)	1085, 1171
BsiSI	CCGG	5 cut(s)	709, 972, 1116, 1262, 1435
BslI	CCNNNNNNNGG	3 cut(s)	335, 1075, 1256
BsnI	GGCC	4 cut(s)	1068, 1096, 1339, 1434
Bsp1286I	GDGCHC	3 cut(s)	1085, 1171, 1204
Bsp13I	TCCGGA	1 cut(s)	971
Bsp1407I	TGTACA	1 cut(s)	1000
Bsp143I	GATC	4 cut(s)	88, 625, 1105, 1121
BspACI	CCGC	8 cut(s)	836, 866, 1370, 1376, 1382, 1409, 1452, 1467
BspANI	GGCC	4 cut(s)	1068, 1096, 1339, 1434
BspCNI	CTCAG	4 cut(s)	290, 621, 868, 1354
BspEI	TCCGGA	1 cut(s)	971
BspFNI	CGCG	1 cut(s)	836
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	1192, 1266
BspMAI	CTGCAG	1 cut(s)	1228
BspMI	ACCTGC	2 cut(s)	1217, 1506
BspPI	GGATC	2 cut(s)	83, 1129
BspT107I	GGYRCC	1 cut(s)	1190
BsrBI	CCGCTC	1 cut(s)	1452
BsrDI	GCAATG	2 cut(s)	108, 1287
BsrFI	RCCGGY	1 cut(s)	1261
BsrGI	TGTACA	1 cut(s)	1000
BsrI	ACTGG	2 cut(s)	262, 681
BssAI	RCCGGY	1 cut(s)	1261
BssECI	CCNNGG	7 cut(s)	5, 605, 709, 931, 1184, 1334, 1435
BssMI	GATC	4 cut(s)	88, 625, 1105, 1121
BssSI	CACGAG	1 cut(s)	1164
BssT1I	CCWWGG	2 cut(s)	5, 605
Bst2BI	CACGAG	1 cut(s)	1164
Bst2UI	CCWGG	5 cut(s)	657, 1185, 1251, 1257, 1335
Bst4CI	ACNGT	4 cut(s)	584, 811, 895, 909
Bst6I	CTCTTC	8 cut(s)	105, 120, 174, 183, 192, 201, 219, 285
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstAUI	TGTACA	1 cut(s)	1000
BstC8I	GCNNGC	4 cut(s)	960, 1070, 1273, 1413
BstDEI	CTNAG	4 cut(s)	277, 629, 855, 1341
BstDSI	CCRYGG	1 cut(s)	931
BstENI	CCTNNNNNAGG	1 cut(s)	1254
BstF5I	GGATG	2 cut(s)	112, 238
BstFNI	CGCG	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	1515
BstKTI	GATC	4 cut(s)	91, 628, 1108, 1124
BstMBI	GATC	4 cut(s)	88, 625, 1105, 1121
BstMWI	GCNNNNNNNGC	9 cut(s)	251, 509, 1031, 1199, 1208, 1232, 1246, 1277, 1464
BstNI	CCWGG	5 cut(s)	657, 1185, 1251, 1257, 1335
BstNSI	RCATGY	2 cut(s)	747, 1415
BstSCI	CCNGG	7 cut(s)	655, 708, 1183, 1249, 1255, 1333, 1434
BstSFI	CTRYAG	2 cut(s)	408, 1224
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	2 cut(s)	835, 1210
BstV2I	GAAGAC	2 cut(s)	87, 834
BstX2I	RGATCY	1 cut(s)	625
BstXI	CCANNNNNNTGG	2 cut(s)	612, 1502
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	1068, 1096, 1339, 1434
BtgI	CCRYGG	1 cut(s)	931
BtsCI	GGATG	2 cut(s)	112, 238
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	4 cut(s)	255, 292, 816, 1044
BveI	ACCTGC	2 cut(s)	1217, 1506
Cac8I	GCNNGC	4 cut(s)	960, 1070, 1273, 1413
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	1515
Cfr10I	RCCGGY	1 cut(s)	1261
Cfr13I	GGNCC	4 cut(s)	653, 1253, 1259, 1337
Csp6I	GTAC	1 cut(s)	1001
CviAII	CATG	9 cut(s)	335, 368, 493, 740, 744, 1276, 1412, 1496, 1508
CviQI	GTAC	1 cut(s)	1001
DdeI	CTNAG	4 cut(s)	277, 629, 855, 1341
DpnI	GATC	4 cut(s)	90, 627, 1107, 1123
DpnII	GATC	4 cut(s)	88, 625, 1105, 1121
EaeI	YGGCCR	2 cut(s)	1066, 1432
Eam1104I	CTCTTC	8 cut(s)	105, 120, 174, 183, 192, 201, 219, 285
EarI	CTCTTC	8 cut(s)	105, 120, 174, 183, 192, 201, 219, 285
Eco130I	CCWWGG	2 cut(s)	5, 605
Eco24I	GRGCYC	1 cut(s)	1204
Eco47I	GGWCC	3 cut(s)	653, 1253, 1259
Eco57I	CTGAAG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	1254
EcoO109I	RGGNCCY	1 cut(s)	1337
EcoRI	GAATTC	1 cut(s)	1126
EcoRII	CCWGG	5 cut(s)	655, 1183, 1249, 1255, 1333
EcoT14I	CCWWGG	2 cut(s)	5, 605
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	1204
ErhI	CCWWGG	2 cut(s)	5, 605
FaeI	CATG	9 cut(s)	338, 371, 496, 743, 747, 1279, 1415, 1499, 1511
FatI	CATG	9 cut(s)	334, 367, 492, 739, 743, 1275, 1411, 1495, 1507
FauI	CCCGC	3 cut(s)	1377, 1383, 1389
Fnu4HI	GCNGC	3 cut(s)	849, 1224, 1409
FokI	GGATG	2 cut(s)	119, 245
FriOI	GRGCYC	1 cut(s)	1204
Fsp4HI	GCNGC	3 cut(s)	849, 1224, 1409
FspBI	CTAG	1 cut(s)	1152
GlaI	GCGC	1 cut(s)	1514
GluI	GCNGC	3 cut(s)	849, 1224, 1409
GsaI	CCCAGC	2 cut(s)	820, 1506
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	1068, 1096, 1339, 1434
HapII	CCGG	5 cut(s)	709, 972, 1116, 1262, 1435
HhaI	GCGC	1 cut(s)	1515
Hin1II	CATG	9 cut(s)	338, 371, 496, 743, 747, 1279, 1415, 1499, 1511
Hin6I	GCGC	1 cut(s)	1513
HinP1I	GCGC	1 cut(s)	1513
HinfI	GANTC	2 cut(s)	776, 839
HpaII	CCGG	5 cut(s)	709, 972, 1116, 1262, 1435
HphI	GGTGA	4 cut(s)	467, 871, 1382, 1514
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	7 cut(s)	58, 280, 343, 432, 488, 630, 1012
Hpy188III	TCNNGA	6 cut(s)	92, 271, 368, 380, 943, 972
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	6 cut(s)	58, 335, 433, 628, 856, 1479
HpyCH4III	ACNGT	4 cut(s)	584, 811, 895, 909
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	8 cut(s)	473, 743, 1091, 1211, 1226, 1235, 1327, 1415
HpyF10VI	GCNNNNNNNGC	9 cut(s)	251, 509, 1031, 1199, 1208, 1232, 1246, 1277, 1464
HpyF3I	CTNAG	4 cut(s)	277, 629, 855, 1341
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	9 cut(s)	338, 371, 496, 743, 747, 1279, 1415, 1499, 1511
HspAI	GCGC	1 cut(s)	1513
Kpn2I	TCCGGA	1 cut(s)	971
Kzo9I	GATC	4 cut(s)	88, 625, 1105, 1121
LmnI	GCTCC	2 cut(s)	1270, 1449
Lsp1109I	GCAGC	2 cut(s)	835, 1210
LweI	GCATC	7 cut(s)	62, 232, 361, 1236, 1275, 1281, 1489
MaeI	CTAG	1 cut(s)	1152
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	4 cut(s)	418, 455, 478, 895
MalI	GATC	4 cut(s)	90, 627, 1107, 1123
MbiI	CCGCTC	1 cut(s)	1452
MboI	GATC	4 cut(s)	88, 625, 1105, 1121
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	1085, 1171, 1204
MlsI	TGGCCA	1 cut(s)	1068
MluCI	AATT	7 cut(s)	521, 536, 782, 880, 990, 1051, 1126
MluNI	TGGCCA	1 cut(s)	1068
MlyI	GAGTC	2 cut(s)	770, 848
MmeI	TCCRAC	1 cut(s)	1056
Mox20I	TGGCCA	1 cut(s)	1068
Mph1103I	ATGCAT	1 cut(s)	745
MroI	TCCGGA	1 cut(s)	971
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	4 cut(s)	389, 540, 786, 911
MslI	CAYNNNNRTG	5 cut(s)	497, 744, 947, 1280, 1494
Msp20I	TGGCCA	1 cut(s)	1068
MspA1I	CMGCKG	1 cut(s)	1072
MspI	CCGG	5 cut(s)	709, 972, 1116, 1262, 1435
MspR9I	CCNGG	7 cut(s)	657, 710, 1185, 1251, 1257, 1335, 1436
MvaI	CCWGG	5 cut(s)	657, 1185, 1251, 1257, 1335
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	9 cut(s)	251, 509, 1031, 1199, 1208, 1232, 1246, 1277, 1464
NciI	CCSGG	2 cut(s)	710, 1436
NdeII	GATC	4 cut(s)	88, 625, 1105, 1121
NlaIII	CATG	9 cut(s)	338, 371, 496, 743, 747, 1279, 1415, 1499, 1511
NlaIV	GGNNCC	2 cut(s)	1192, 1266
NmuCI	GTSAC	3 cut(s)	455, 478, 895
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	747, 1415
OliI	CACNNNNGTG	1 cut(s)	947
PaeI	GCATGC	1 cut(s)	1415
PagI	TCATGA	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	1075
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	850, 1225, 1410
PleI	GAGTC	2 cut(s)	770, 847
PpsI	GAGTC	2 cut(s)	770, 847
Psp6I	CCWGG	5 cut(s)	655, 1183, 1249, 1255, 1333
PspFI	CCCAGC	2 cut(s)	816, 1502
PspGI	CCWGG	5 cut(s)	655, 1183, 1249, 1255, 1333
PspN4I	GGNNCC	2 cut(s)	1192, 1266
PspPI	GGNCC	4 cut(s)	653, 1253, 1259, 1337
PsrI	GAACNNNNNNTAC	2 cut(s)	1456, 1488
PstI	CTGCAG	1 cut(s)	1228
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	1072
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
RseI	CAYNNNNRTG	5 cut(s)	497, 744, 947, 1280, 1494
SaqAI	TTAA	4 cut(s)	389, 540, 786, 911
SatI	GCNGC	3 cut(s)	849, 1224, 1409
Sau3AI	GATC	4 cut(s)	88, 625, 1105, 1121
Sau96I	GGNCC	4 cut(s)	653, 1253, 1259, 1337
SchI	GAGTC	2 cut(s)	770, 848
ScrFI	CCNGG	7 cut(s)	657, 710, 1185, 1251, 1257, 1335, 1436
SduI	GDGCHC	3 cut(s)	1085, 1171, 1204
SfaNI	GCATC	7 cut(s)	62, 232, 361, 1236, 1275, 1281, 1489
SfcI	CTRYAG	2 cut(s)	408, 1224
SinI	GGWCC	3 cut(s)	653, 1253, 1259
SmiMI	CAYNNNNRTG	5 cut(s)	497, 744, 947, 1280, 1494
SphI	GCATGC	1 cut(s)	1415
Sse9I	AATT	7 cut(s)	521, 536, 782, 880, 990, 1051, 1126
SsiI	CCGC	8 cut(s)	836, 866, 1370, 1376, 1382, 1409, 1452, 1467
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	1152
StyD4I	CCNGG	7 cut(s)	655, 708, 1183, 1249, 1255, 1333, 1434
StyI	CCWWGG	2 cut(s)	5, 605
TaaI	ACNGT	4 cut(s)	584, 811, 895, 909
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	1124
TasI	AATT	7 cut(s)	521, 536, 782, 880, 990, 1051, 1126
TatI	WGTACW	1 cut(s)	1000
TauI	GCSGC	1 cut(s)	1411
Tru1I	TTAA	4 cut(s)	389, 540, 786, 911
Tru9I	TTAA	4 cut(s)	389, 540, 786, 911
TscAI	CASTG	4 cut(s)	262, 292, 816, 1051
TseFI	GTSAC	3 cut(s)	455, 478, 895
TseI	GCWGC	2 cut(s)	848, 1223
Tsp45I	GTSAC	3 cut(s)	455, 478, 895
TspGWI	ACGGA	1 cut(s)	1324
TspRI	CASTG	4 cut(s)	262, 292, 816, 1051
Van91I	CCANNNNNTGG	1 cut(s)	1075
VpaK11BI	GGWCC	3 cut(s)	653, 1253, 1259
XagI	CCTNNNNNAGG	1 cut(s)	1254
XapI	RAATTY	4 cut(s)	536, 782, 880, 1126
XceI	RCATGY	2 cut(s)	747, 1415
XcmI	CCANNNNNNNNNTGG	2 cut(s)	787, 813
XspI	CTAG	1 cut(s)	1152
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.