Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Reverse (-)

22389754 .. 22395052

Gene Structure 5299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGTCGGTTGCTAAACTTCTCGGATATGATGAGAGAAAGATAAATGAAGTTGAAAGCTGCTGGATGGATCCTTCTATGTATAAGGCGGCAACATCTGGTGATGTCGGTTTCTTGGAAATGATTAGAGTTGGTGAGGTATCTAGTGATGTTCTCAGTCACAAGACACCTAAAGGCAACAACATTCTTCACCTTGCAGCTGAATCCAAGCAAATCAATTTCTTCAAAGGCGTCCCTTCCTTTGAGAAAGGCTTTCCGCTGCTTTGGGACATCAACAAGATGGGTGACACCCCCTTGCACATTGCTTCAAGAGTAGGATGCGTTGAATTGGTGGACTTCCTTATAGATCGTGCAAAAATGCTACATGTTCAGAGAGTTGGCGATCAGGAAAGGGGAACAACATATTCTGAATCTTATAAAAAGTTACTGCGGAAGACCAACTTGGAAATGCATACGGCATTGCACGTTGCTGCCCGATACGGTCACCAGGGAGTGGCGATTTCGTTGATGAAAGCATATCCTGAATTGTGTTGTTCTACTAATAGCACCAAGGAGTCTCCATTGTTCTTGGCAACCTGCAAGGGTTTTTCTAACATTGCTGGTGACATTTTGAAGGAGCCTTCAATATCTCCTTCTTTCCAAGGAATCAATGGTGTTACAGCTCTACATGCTGCTGTAACTCATACGTACCAAGGCGCCGAAGAGATTGTGGAGACTATGGTATCCAAATATCCTGATACGATCAAAGAAGTTGATTCACTTGGGTGGGCACCCTTACACTACGCAGCATGGAGAGGGAACCTTGAAGCAACTGGATATTTGATTCAATGGGACAAATTTAGTACTTCTTACATCTTGGACAAATGTGGAATGTCAGCTCTTCATGTTGCAGCGTTCAGAGGACAGGTTAAAGTAATGCAGAAGCTGATTGAATGTCGGCCTGATACTTGTGAGTGTCTCAATGACAAAGGACAAACCATTCTTCATGTCGCAGTTTTAGGTGAACAAAGTGATGTTGTTGAGTGCATACTGAAGATACCTGAGCTTAAGGGACTTATAGATCAAGCAGATAAAGAAGGAAATACCCCTTTGCATCTAGCTGCTATCGCTCAAAATCATGTAATTAGAAGAATGCTGACAGAAACACTCGACTGTGGAGTGGAAAATACTGCTATTCATAAGGGATTCCCGCTGGTTTTCGACAATTTTCTTGGTGACAATATTGAAGTACAGGAGATCATTGATCGTAGTTATCAAGGAGGCTCCTTCGGTGTGCCGTTGTTCCAAGAACAAATAAGACGTGATTTCAAGAAATTGGAATTACATGAGAAGAACGATAAATCCGACACTGCCTCGGCCATCGTAGGCAGCGGAAAGGATCGGATATCTGAAATAAATCTACTGGTAGCGACACTTATCGCAACAGTTACATTTGCTGCTGCTCTCGCTCCACCTGGAGGATATGGGGATAACGGAAAGATGATTTTACAGCAAAATACAAATTTCCAAATTTTTCAGACATTCAACACGATATCCTTTATTTTCTCCCTTACGGTACTTTTACTTGAAGCTTTTAAGGCGTATTGGGGCTCCAAATTCCCCAATTTCCTCCGCCTGAAACCTGGAGGCCTTATTATGGGTTCACTTGTCGGAATGATTTTCGCATTTCCGCTAGGCTCGGCAGCAGGGCAAATCACAGTTAAGAAAACGACGCCGGTTGACGGTTGGATAATTCTACTAATTTGCGTTTTCTCATTTTCAGCTATGAGTCCTAAGATGAATGAACTTGTCACCAACAGAGGCGGAGCCATGTTGGGGCATGGTGGGTCCCGTGCCCCAGTCAGATCTTCATTATATATGTATCTGGTTTCATATTTTCGTGAAAAGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0071704 GO:0080090 GO:0090304 GO:0097452 GO:1901360 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

630

Amino Acids

69.46

Weight (kDa)

6.79

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	29 - 116	4.8e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	214 - 275	1.6e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	230 - 313	9.2e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	284 - 343	1.5e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	293 - 383	7e-12	Ankyrin repeats (3 copies)
PGG	PF13962	461 - 559	9e-20	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	581
AccB1I	GGYRCC	2 cut(s)	692, 766
AccB7I	CCANNNNNTGG	1 cut(s)	490
AciI	CCGC	8 cut(s)	86, 254, 427, 1187, 1368, 1609, 1667, 1800
AclWI	GGATC	3 cut(s)	62, 75, 1383
AcoI	YGGCCR	1 cut(s)	1353
AcsI	RAATTY	4 cut(s)	833, 1498, 1506, 1592
AcuI	CTGAAG	1 cut(s)	1049
AcyI	GRCGYC	3 cut(s)	228, 693, 1709
AfaI	GTAC	4 cut(s)	686, 841, 1227, 1554
AfiI	CCNNNNNNNGG	5 cut(s)	490, 1454, 1633, 1718, 1812
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	1 cut(s)	361
AjiI	CACGTC	1 cut(s)	1298
AjnI	CCWGG	3 cut(s)	483, 1450, 1618
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AleI	CACNNNNGTG	1 cut(s)	760
AloI	GAACNNNNNNTCC	2 cut(s)	1322, 1354
Alw26I	GTCTC	3 cut(s)	558, 704, 959
AlwI	GGATC	3 cut(s)	62, 75, 1383
AlwNI	CAGNNNCTG	1 cut(s)	922
AoxI	GGCC	3 cut(s)	935, 1353, 1624
ApoI	RAATTY	4 cut(s)	833, 1498, 1506, 1592
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	1824
AsuHPI	GGTGA	9 cut(s)	110, 143, 179, 293, 473, 611, 1010, 1223, 1780
AvaII	GGWCC	1 cut(s)	1824
BaeGI	GKGCMC	2 cut(s)	769, 1834
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	2 cut(s)	692, 766
BanII	GRGCYC	1 cut(s)	1589
BbsI	GAAGAC	1 cut(s)	437
BccI	CCATC	3 cut(s)	58, 271, 1364
BceAI	ACGGC	2 cut(s)	468, 1258
BciT130I	CCWGG	3 cut(s)	485, 1452, 1620
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	558, 704, 959
BfaI	CTAG	3 cut(s)	141, 1094, 1670
BfoI	RGCGCY	1 cut(s)	696
BfrI	CTTAAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	730
BglII	AGATCT	1 cut(s)	1841
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	3 cut(s)	485, 1452, 1620
Bme18I	GGWCC	1 cut(s)	1824
BmgBI	CACGTC	1 cut(s)	1298
BmgT120I	GGNCC	1 cut(s)	1824
BmrFI	CCNGG	3 cut(s)	485, 1452, 1620
BmrI	ACTGGG	1 cut(s)	1829
BmsI	GCATC	2 cut(s)	305, 1099
BmuI	ACTGGG	1 cut(s)	1829
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	2 cut(s)	1473, 1641
Bpu10I	CCTNAGC	1 cut(s)	1038
BsaAI	YACGTR	1 cut(s)	684
BsaHI	GRCGYC	3 cut(s)	228, 693, 1709
BsaJI	CCNNGG	5 cut(s)	484, 546, 637, 688, 1350
Bsc4I	CCNNNNNNNGG	5 cut(s)	490, 1454, 1633, 1718, 1812
Bse118I	RCCGGY	1 cut(s)	1711
Bse1I	ACTGG	3 cut(s)	814, 1404, 1835
Bse3DI	GCAATG	3 cut(s)	297, 455, 591
BseBI	CCWGG	3 cut(s)	485, 1452, 1620
BseDI	CCNNGG	5 cut(s)	484, 546, 637, 688, 1350
BseGI	GGATG	2 cut(s)	69, 320
BseLI	CCNNNNNNNGG	5 cut(s)	490, 1454, 1633, 1718, 1812
BseMI	GCAATG	3 cut(s)	297, 455, 591
BseMII	CTCAG	2 cut(s)	166, 1029
BseNI	ACTGG	3 cut(s)	814, 1404, 1835
BseSI	GKGCMC	2 cut(s)	769, 1834
BshFI	GGCC	3 cut(s)	937, 1355, 1626
BshNI	GGYRCC	2 cut(s)	692, 766
BsiSI	CCGG	1 cut(s)	1712
BslFI	GGGAC	5 cut(s)	215, 278, 842, 1062, 1810
BslI	CCNNNNNNNGG	5 cut(s)	490, 1454, 1633, 1718, 1812
BsmAI	GTCTC	3 cut(s)	558, 704, 959
BsmFI	GGGAC	5 cut(s)	215, 278, 842, 1062, 1810
BsmI	GAATGC	1 cut(s)	1134
BsnI	GGCC	3 cut(s)	937, 1355, 1626
Bsp1286I	GDGCHC	3 cut(s)	769, 1589, 1834
Bsp143I	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
BspACI	CCGC	8 cut(s)	86, 254, 427, 1187, 1368, 1609, 1667, 1800
BspANI	GGCC	3 cut(s)	937, 1355, 1626
BspCNI	CTCAG	2 cut(s)	165, 1030
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	3 cut(s)	62, 75, 1383
BspQI	GCTCTTC	1 cut(s)	882
BspT107I	GGYRCC	2 cut(s)	692, 766
BspTI	CTTAAG	1 cut(s)	1043
BsrDI	GCAATG	3 cut(s)	297, 455, 591
BsrFI	RCCGGY	1 cut(s)	1711
BsrI	ACTGG	3 cut(s)	814, 1404, 1835
BssAI	RCCGGY	1 cut(s)	1711
BssECI	CCNNGG	5 cut(s)	484, 546, 637, 688, 1350
BssMI	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
BssNI	GRCGYC	3 cut(s)	228, 693, 1709
BssT1I	CCWWGG	3 cut(s)	546, 637, 688
Bst2UI	CCWGG	3 cut(s)	485, 1452, 1620
Bst4CI	ACNGT	6 cut(s)	479, 1151, 1423, 1552, 1696, 1721
Bst6I	CTCTTC	2 cut(s)	693, 882
BstACI	GRCGYC	3 cut(s)	228, 693, 1709
BstAFI	CTTAAG	1 cut(s)	1043
BstBAI	YACGTR	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	152, 1038, 1770
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	69, 320
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	9 cut(s)	70, 346, 382, 741, 1060, 1236, 1243, 1378, 1844
BstMAI	GTCTC	3 cut(s)	558, 704, 959
BstMBI	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
BstMWI	GCNNNNNNNGC	4 cut(s)	665, 1103, 1442, 1574
BstNI	CCWGG	3 cut(s)	485, 1452, 1620
BstNSI	RCATGY	2 cut(s)	365, 668
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	483, 1450, 1618
BstSLI	GKGCMC	2 cut(s)	769, 1834
BstSNI	TACGTA	1 cut(s)	684
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	67, 1841
BstYI	RGATCY	2 cut(s)	67, 1841
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	937, 1355, 1626
BtrI	CACGTC	1 cut(s)	1298
BtsCI	GGATG	2 cut(s)	69, 320
BtsI	GCAGTG	1 cut(s)	1344
BtsIMutI	CAGTG	1 cut(s)	1344
BveI	ACCTGC	1 cut(s)	581
CaiI	CAGNNNCTG	1 cut(s)	922
CfoI	GCGC	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	1711
Cfr13I	GGNCC	1 cut(s)	1824
CseI	GACGC	2 cut(s)	217, 1717
Csp6I	GTAC	4 cut(s)	685, 840, 1226, 1553
CviAII	CATG	9 cut(s)	362, 665, 786, 881, 983, 1115, 1322, 1807, 1817
CviQI	GTAC	4 cut(s)	685, 840, 1226, 1553
DdeI	CTNAG	3 cut(s)	152, 1038, 1770
DinI	GGCGCC	1 cut(s)	694
DpnI	GATC	9 cut(s)	69, 345, 381, 740, 1059, 1235, 1242, 1377, 1843
DpnII	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
EaeI	YGGCCR	1 cut(s)	1353
Eam1104I	CTCTTC	2 cut(s)	693, 882
EarI	CTCTTC	2 cut(s)	693, 882
EciI	GGCGGA	2 cut(s)	1598, 1815
Eco105I	TACGTA	1 cut(s)	684
Eco130I	CCWWGG	3 cut(s)	546, 637, 688
Eco147I	AGGCCT	1 cut(s)	1626
Eco24I	GRGCYC	1 cut(s)	1589
Eco32I	GATATC	2 cut(s)	1383, 1530
Eco47I	GGWCC	1 cut(s)	1824
Eco57I	CTGAAG	1 cut(s)	1049
Eco91I	GGTNACC	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	1824
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	483, 1450, 1618
EcoRV	GATATC	2 cut(s)	1383, 1530
EcoT14I	CCWWGG	3 cut(s)	546, 637, 688
EcoT22I	ATGCAT	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	1589
EgeI	GGCGCC	1 cut(s)	694
EheI	GGCGCC	1 cut(s)	694
ErhI	CCWWGG	3 cut(s)	546, 637, 688
FaeI	CATG	9 cut(s)	365, 668, 789, 884, 986, 1118, 1325, 1810, 1820
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	5 cut(s)	215, 278, 842, 1062, 1810
FatI	CATG	9 cut(s)	361, 664, 785, 880, 982, 1114, 1321, 1806, 1816
FauI	CCCGC	1 cut(s)	1194
FokI	GGATG	2 cut(s)	76, 327
FriOI	GRGCYC	1 cut(s)	1589
FspBI	CTAG	3 cut(s)	141, 1094, 1670
GlaI	GCGC	1 cut(s)	694
GsuI	CTGGAG	2 cut(s)	1473, 1641
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	937, 1355, 1626
HapII	CCGG	1 cut(s)	1712
HgaI	GACGC	2 cut(s)	217, 1717
HhaI	GCGC	1 cut(s)	695
Hin1I	GRCGYC	3 cut(s)	228, 693, 1709
Hin1II	CATG	9 cut(s)	365, 668, 789, 884, 986, 1118, 1325, 1810, 1820
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HincII	GTYRAC	1 cut(s)	1717
HindII	GTYRAC	1 cut(s)	1717
HindIII	AAGCTT	1 cut(s)	1566
HinfI	GANTC	8 cut(s)	200, 407, 551, 642, 752, 820, 1182, 1765
HpaII	CCGG	1 cut(s)	1712
HphI	GGTGA	9 cut(s)	110, 143, 179, 293, 473, 611, 1010, 1223, 1780
Hpy166II	GTNNAC	4 cut(s)	331, 1001, 1640, 1717
Hpy188III	TCNNGA	6 cut(s)	306, 383, 518, 731, 1306, 1877
Hpy8I	GTNNAC	4 cut(s)	331, 1001, 1640, 1717
Hpy99I	CGWCG	1 cut(s)	1711
HpyAV	CCTTC	7 cut(s)	81, 243, 604, 627, 639, 1067, 1273
HpyCH4III	ACNGT	6 cut(s)	479, 1151, 1423, 1552, 1696, 1721
HpyCH4IV	ACGT	3 cut(s)	462, 683, 1297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	665, 1103, 1442, 1574
HpyF3I	CTNAG	3 cut(s)	152, 1038, 1770
HpySE526I	ACGT	3 cut(s)	462, 683, 1297
Hsp92I	GRCGYC	3 cut(s)	228, 693, 1709
Hsp92II	CATG	9 cut(s)	365, 668, 789, 884, 986, 1118, 1325, 1810, 1820
HspAI	GCGC	1 cut(s)	693
KasI	GGCGCC	1 cut(s)	692
KflI	GGGWCCC	1 cut(s)	1824
Kzo9I	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	5 cut(s)	613, 1265, 1450, 1592, 1802
LweI	GCATC	2 cut(s)	305, 1099
MaeI	CTAG	3 cut(s)	141, 1094, 1670
MaeII	ACGT	3 cut(s)	462, 683, 1297
MalI	GATC	9 cut(s)	69, 345, 381, 740, 1059, 1235, 1242, 1377, 1843
MboI	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
MflI	RGATCY	2 cut(s)	67, 1841
MhlI	GDGCHC	3 cut(s)	769, 1589, 1834
Mly113I	GGCGCC	1 cut(s)	693
MlyI	GAGTC	2 cut(s)	560, 1774
MmeI	TCCRAC	3 cut(s)	1365, 1627, 1703
MnlI	CCTC	9 cut(s)	127, 785, 890, 1250, 1360, 1448, 1616, 1616, 1790
Mph1103I	ATGCAT	1 cut(s)	450
MseI	TTAA	4 cut(s)	906, 1044, 1572, 1698
MslI	CAYNNNNRTG	1 cut(s)	760
MspA1I	CMGCKG	4 cut(s)	197, 256, 1189, 1368
MspCI	CTTAAG	1 cut(s)	1043
MspI	CCGG	1 cut(s)	1712
MspR9I	CCNGG	3 cut(s)	485, 1452, 1620
Mva1269I	GAATGC	1 cut(s)	1134
MvaI	CCWGG	3 cut(s)	485, 1452, 1620
MwoI	GCNNNNNNNGC	4 cut(s)	665, 1103, 1442, 1574
NarI	GGCGCC	1 cut(s)	693
NdeII	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
NlaIII	CATG	9 cut(s)	365, 668, 789, 884, 986, 1118, 1325, 1810, 1820
NmeAIII	GCCGAG	2 cut(s)	1331, 1655
NmuCI	GTSAC	6 cut(s)	155, 281, 479, 599, 1211, 1786
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	2 cut(s)	365, 668
OliI	CACNNNNGTG	1 cut(s)	760
PceI	AGGCCT	1 cut(s)	1626
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	1338
PctI	GAATGC	1 cut(s)	1134
PfeI	GAWTC	6 cut(s)	200, 407, 642, 752, 820, 1182
PflMI	CCANNNNNTGG	1 cut(s)	490
PleI	GAGTC	2 cut(s)	559, 1773
PluTI	GGCGCC	1 cut(s)	696
PpsI	GAGTC	2 cut(s)	559, 1773
Ppu21I	YACGTR	1 cut(s)	684
PpuMI	RGGWCCY	1 cut(s)	1824
PscI	ACATGT	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	1824
Psp6I	CCWGG	3 cut(s)	483, 1450, 1618
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	3 cut(s)	483, 1450, 1618
PspPI	GGNCC	1 cut(s)	1824
PspPPI	RGGWCCY	1 cut(s)	1824
PstNI	CAGNNNCTG	1 cut(s)	922
PsuI	RGATCY	2 cut(s)	67, 1841
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	686, 841, 1227, 1554
RsaNI	GTAC	4 cut(s)	685, 840, 1226, 1553
RseI	CAYNNNNRTG	1 cut(s)	760
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	4 cut(s)	906, 1044, 1572, 1698
Sau3AI	GATC	9 cut(s)	67, 343, 379, 738, 1057, 1233, 1240, 1375, 1841
Sau96I	GGNCC	1 cut(s)	1824
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	560, 1774
ScrFI	CCNGG	3 cut(s)	485, 1452, 1620
SduI	GDGCHC	3 cut(s)	769, 1589, 1834
SfaNI	GCATC	2 cut(s)	305, 1099
SfoI	GGCGCC	1 cut(s)	694
SinI	GGWCC	1 cut(s)	1824
SmiMI	CAYNNNNRTG	1 cut(s)	760
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
SnaBI	TACGTA	1 cut(s)	684
SseBI	AGGCCT	1 cut(s)	1626
SsiI	CCGC	8 cut(s)	86, 254, 427, 1187, 1368, 1609, 1667, 1800
SspDI	GGCGCC	1 cut(s)	692
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	3 cut(s)	141, 1094, 1670
StuI	AGGCCT	1 cut(s)	1626
StyD4I	CCNGG	3 cut(s)	483, 1450, 1618
StyI	CCWWGG	3 cut(s)	546, 637, 688
TaaI	ACNGT	6 cut(s)	479, 1151, 1423, 1552, 1696, 1721
TaiI	ACGT	3 cut(s)	465, 686, 1300
TaqI	TCGA	2 cut(s)	1146, 1197
TatI	WGTACW	2 cut(s)	839, 1225
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	6 cut(s)	200, 407, 642, 752, 820, 1182
Tru1I	TTAA	4 cut(s)	906, 1044, 1572, 1698
Tru9I	TTAA	4 cut(s)	906, 1044, 1572, 1698
TscAI	CASTG	1 cut(s)	1351
TseFI	GTSAC	6 cut(s)	155, 281, 479, 599, 1211, 1786
Tsp45I	GTSAC	6 cut(s)	155, 281, 479, 599, 1211, 1786
TspDTI	ATGAA	9 cut(s)	60, 521, 869, 971, 1163, 1790, 1794, 1836, 1857
TspGWI	ACGGA	1 cut(s)	1485
TspRI	CASTG	1 cut(s)	1351
Van91I	CCANNNNNTGG	1 cut(s)	490
Vha464I	CTTAAG	1 cut(s)	1043
VpaK11BI	GGWCC	1 cut(s)	1824
XapI	RAATTY	4 cut(s)	833, 1498, 1506, 1592
XceI	RCATGY	2 cut(s)	365, 668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	3 cut(s)	141, 1094, 1670
ZrmI	AGTACT	1 cut(s)	841
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.