Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Forward (+)

11235557 .. 11242253

Gene Structure 6697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0136600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGATCAAACTCAGCCCTCTATGCCCCATGTCCGCCACTACCAAATGTTCAAGAAATGGTGAGGAGTGACCCTTTTCAGGTGCCTGAAAGATACATCAGGGATGAAAAGGACATTGCAAACGATGCCGGTTTGTGCTCTCAGCTTTCCTCCGAGGTTCCCATCATCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCGAGGAATGGGGTTTCTTTCAGATGGTAAATCATGGAGTGGCAACAGAAATAACGAAGGGCTTGAAGGATTCAGCGCTGAAGTTCTTCGAACTTCCATTAGAAGAGAAGAACCAAATTGCTATGCCACCAAATGACATACAAGGCTATGGCCATTCCCATGTGGATCAGGTCCTGGATTGGTCTGACAAACTTGTTCTTGTTGTTTACCCACAACAGCATAGAAAGCTCGATGTTTGGCCACCAAGTCCATTCAAGGAGGCTATTGAGACATATTCTAGTGAACTTGGACGAATTGGAGAGGAGCTCCTGAGGTCTGTCTCTTTAATAATGGGGATGGAGAAGGATGCACTCCTCCTGTTACATCAAGAGTTGGTACAACCTATGTCTGTGGCGTACTATCCTCCCTGCTTCATGCCTGATAAAGTAATGGGTCTCAGTCCACATTCAGACAAAGGCACCTTGGGTGTACTTATGCAAGAAGAAGATGTACCGGGACTCCAAATCAAACACAAAGAAAAATGGGTACCGATCAAGCCATTGCCCAATGCTTTCGTTGTGAATGTTGGAGATATTATCGAGATTTGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTGGTAACAAACAAAAGCAAGGCGAGGATATCTTATTCAACCTTTTATATACCACATCGAAATGTTGATATTGAACCCCTTGATCAAATGGTACTTGAGACTCCTGGGTCCCTTCCATTGTACAAGAAAGTCACTTACGGAGATTATCTGAAGCAAACCCAGAAGATGAAAAAAGAAGGGAAGGCACATGTCACCGAAGTTGCCAAGATTGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0030895 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050821 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

354

Amino Acids

40.04

Weight (kDa)

5.61

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 157	2.5e-26	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	203 - 299	3.7e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	952
Acc65I	GGTACC	1 cut(s)	751
AccB1I	GGYRCC	3 cut(s)	82, 683, 751
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	13, 399
AcoI	YGGCCR	2 cut(s)	376, 464
AcuI	CTGAAG	2 cut(s)	326, 1016
AdeI	CACNNNGTG	1 cut(s)	847
AfaI	GTAC	8 cut(s)	603, 623, 696, 717, 753, 827, 939, 968
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	1033
AgsI	TTSAA	6 cut(s)	53, 292, 481, 839, 885, 920
AjnI	CCWGG	3 cut(s)	219, 399, 949
AluBI	AGCT	5 cut(s)	145, 205, 214, 454, 532
AluI	AGCT	5 cut(s)	145, 205, 214, 454, 532
Alw21I	GWGCWC	2 cut(s)	140, 534
Alw26I	GTCTC	4 cut(s)	488, 550, 665, 938
AlwI	GGATC	2 cut(s)	13, 399
AlwNI	CAGNNNCTG	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	2 cut(s)	376, 464
Asp700I	GAANNNNTTC	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	217, 397, 954
AsuC2I	CCSGG	1 cut(s)	720
AsuHPI	GGTGA	2 cut(s)	73, 1030
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	3 cut(s)	217, 397, 954
AxyI	CCTNAGG	1 cut(s)	536
BalI	TGGCCA	2 cut(s)	378, 466
BanI	GGYRCC	3 cut(s)	82, 683, 751
BanII	GRGCYC	1 cut(s)	534
BarI	GAAGNNNNNNTAC	2 cut(s)	699, 731
Bbv12I	GWGCWC	2 cut(s)	140, 534
BccI	CCATC	3 cut(s)	170, 244, 556
BciT130I	CCWGG	3 cut(s)	221, 401, 951
BclI	TGATCA	1 cut(s)	928
BcnI	CCSGG	1 cut(s)	720
BcoDI	GTCTC	4 cut(s)	488, 550, 665, 938
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	221, 401, 720, 951
Bme18I	GGWCC	3 cut(s)	217, 397, 954
BmgT120I	GGNCC	3 cut(s)	217, 397, 954
BmiI	GGNNCC	6 cut(s)	84, 159, 685, 753, 955, 956
BmrFI	CCNGG	4 cut(s)	221, 401, 720, 951
BmsI	GCATC	2 cut(s)	115, 562
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	1 cut(s)	720
Bsa29I	ATCGAT	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	153, 687, 950
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	536
Bse3DI	GCAATG	2 cut(s)	114, 764
BseBI	CCWGG	3 cut(s)	221, 401, 951
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	3 cut(s)	153, 687, 950
BseGI	GGATG	3 cut(s)	109, 567, 577
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	2 cut(s)	114, 764
BseMII	CTCAG	4 cut(s)	27, 155, 527, 676
BseRI	GAGGAG	4 cut(s)	79, 215, 542, 569
BshFI	GGCC	2 cut(s)	378, 466
BshNI	GGYRCC	3 cut(s)	82, 683, 751
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	140, 534
BsiSI	CCGG	2 cut(s)	129, 719
BslFI	GGGAC	2 cut(s)	735, 940
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	4 cut(s)	488, 550, 665, 938
BsmFI	GGGAC	2 cut(s)	735, 940
BsnI	GGCC	2 cut(s)	378, 466
Bso31I	GGTCTC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	140, 534
Bsp1407I	TGTACA	1 cut(s)	966
Bsp143I	GATC	4 cut(s)	5, 391, 756, 928
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	378, 466
BspCNI	CTCAG	4 cut(s)	26, 154, 528, 675
BspDI	ATCGAT	1 cut(s)	168
BspLI	GGNNCC	6 cut(s)	84, 159, 685, 753, 955, 956
BspPI	GGATC	2 cut(s)	13, 399
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	3 cut(s)	82, 683, 751
BspTNI	GGTCTC	1 cut(s)	665
BsrDI	GCAATG	2 cut(s)	114, 764
BsrFI	RCCGGY	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	966
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	153, 687, 950
BssMI	GATC	4 cut(s)	5, 391, 756, 928
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	221, 401, 951
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	966
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	4 cut(s)	13, 141, 536, 662
BstF5I	GGATG	3 cut(s)	109, 567, 577
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	4 cut(s)	8, 394, 759, 931
BstMAI	GTCTC	4 cut(s)	488, 550, 665, 938
BstMBI	GATC	4 cut(s)	5, 391, 756, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 125, 211, 451, 1055
BstNI	CCWGG	3 cut(s)	221, 401, 951
BstNSI	RCATGY	1 cut(s)	1037
BstSCI	CCNGG	4 cut(s)	219, 399, 718, 949
Bsu15I	ATCGAT	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	378, 466
BsuTUI	ATCGAT	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	109, 567, 577
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	217, 397, 954
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	8 cut(s)	602, 622, 695, 716, 752, 826, 938, 967
CviAII	CATG	5 cut(s)	30, 260, 386, 640, 1034
CviQI	GTAC	8 cut(s)	602, 622, 695, 716, 752, 826, 938, 967
DdeI	CTNAG	4 cut(s)	13, 141, 536, 662
DpnI	GATC	4 cut(s)	7, 393, 758, 930
DpnII	GATC	4 cut(s)	5, 391, 756, 928
DraIII	CACNNNGTG	1 cut(s)	847
DrdI	GACNNNNNNGTC	1 cut(s)	952
DseDI	GACNNNNNNGTC	1 cut(s)	952
EaeI	YGGCCR	2 cut(s)	376, 464
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	3 cut(s)	217, 397, 954
Eco47III	AGCGCT	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	326, 1016
Eco81I	CCTNAGG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	2 cut(s)	397, 954
EcoRII	CCWGG	3 cut(s)	219, 399, 949
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	5 cut(s)	33, 263, 389, 643, 1037
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	2 cut(s)	735, 940
FatI	CATG	5 cut(s)	29, 259, 385, 639, 1033
FbaI	TGATCA	1 cut(s)	928
FokI	GGATG	3 cut(s)	116, 574, 584
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	378, 466
HapII	CCGG	2 cut(s)	129, 719
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	33, 263, 389, 643, 1037
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	3 cut(s)	296, 723, 946
HpaII	CCGG	2 cut(s)	129, 719
HphI	GGTGA	2 cut(s)	73, 1030
Hpy166II	GTNNAC	4 cut(s)	433, 509, 668, 695
Hpy188I	TCNGA	5 cut(s)	154, 249, 412, 676, 996
Hpy188III	TCNNGA	4 cut(s)	53, 535, 593, 805
Hpy8I	GTNNAC	4 cut(s)	433, 509, 668, 695
HpyAV	CCTTC	6 cut(s)	277, 286, 562, 968, 1016, 1021
HpyCH4V	TGCA	3 cut(s)	119, 575, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 125, 211, 451, 1055
HpyF3I	CTNAG	4 cut(s)	13, 141, 536, 662
Hsp92II	CATG	5 cut(s)	33, 263, 389, 643, 1037
HspAI	GCGC	1 cut(s)	302
KflI	GGGWCCC	1 cut(s)	954
KpnI	GGTACC	1 cut(s)	755
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	5, 391, 756, 928
LmnI	GCTCC	3 cut(s)	202, 529, 537
LweI	GCATC	2 cut(s)	115, 562
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	5 cut(s)	68, 585, 850, 976, 1036
MalI	GATC	4 cut(s)	7, 393, 758, 930
MboI	GATC	4 cut(s)	5, 391, 756, 928
MboII	GAAGA	6 cut(s)	304, 341, 346, 719, 722, 1021
MhlI	GDGCHC	2 cut(s)	140, 534
MlsI	TGGCCA	2 cut(s)	378, 466
MluCI	AATT	3 cut(s)	342, 519, 1060
MluNI	TGGCCA	2 cut(s)	378, 466
MlyI	GAGTC	2 cut(s)	717, 940
MmeI	TCCRAC	1 cut(s)	772
Mox20I	TGGCCA	2 cut(s)	378, 466
MroXI	GAANNNNTTC	1 cut(s)	311
MscI	TGGCCA	2 cut(s)	378, 466
MseI	TTAA	2 cut(s)	551, 1063
MslI	CAYNNNNRTG	2 cut(s)	384, 906
Msp20I	TGGCCA	2 cut(s)	378, 466
MspI	CCGG	2 cut(s)	129, 719
MspR9I	CCNGG	4 cut(s)	221, 401, 720, 951
MvaI	CCWGG	3 cut(s)	221, 401, 951
MwoI	GCNNNNNNNGC	5 cut(s)	23, 125, 211, 451, 1055
NciI	CCSGG	1 cut(s)	720
NdeII	GATC	4 cut(s)	5, 391, 756, 928
NlaIII	CATG	5 cut(s)	33, 263, 389, 643, 1037
NlaIV	GGNNCC	6 cut(s)	84, 159, 685, 753, 955, 956
NmuCI	GTSAC	3 cut(s)	68, 976, 1036
NspI	RCATGY	1 cut(s)	1037
NspV	TTCGAA	1 cut(s)	315
PciI	ACATGT	1 cut(s)	1033
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	399
PleI	GAGTC	2 cut(s)	717, 940
PpsI	GAGTC	2 cut(s)	717, 940
PpuMI	RGGWCCY	2 cut(s)	397, 954
PscI	ACATGT	1 cut(s)	1033
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	2 cut(s)	397, 954
Psp6I	CCWGG	3 cut(s)	219, 399, 949
PspGI	CCWGG	3 cut(s)	219, 399, 949
PspN4I	GGNNCC	6 cut(s)	84, 159, 685, 753, 955, 956
PspPI	GGNCC	3 cut(s)	217, 397, 954
PspPPI	RGGWCCY	2 cut(s)	397, 954
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	8 cut(s)	603, 623, 696, 717, 753, 827, 939, 968
RsaNI	GTAC	8 cut(s)	602, 622, 695, 716, 752, 826, 938, 967
RseI	CAYNNNNRTG	2 cut(s)	384, 906
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	551, 1063
Sau3AI	GATC	4 cut(s)	5, 391, 756, 928
Sau96I	GGNCC	3 cut(s)	217, 397, 954
SchI	GAGTC	2 cut(s)	717, 940
ScrFI	CCNGG	4 cut(s)	221, 401, 720, 951
SduI	GDGCHC	2 cut(s)	140, 534
SfaNI	GCATC	2 cut(s)	115, 562
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	3 cut(s)	217, 397, 954
SmiMI	CAYNNNNRTG	2 cut(s)	384, 906
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
Sse9I	AATT	3 cut(s)	342, 519, 1060
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	4 cut(s)	219, 399, 718, 949
StyI	CCWWGG	1 cut(s)	687
TaqI	TCGA	5 cut(s)	168, 315, 456, 804, 904
TasI	AATT	3 cut(s)	342, 519, 1060
TatI	WGTACW	3 cut(s)	694, 825, 966
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	551, 1063
Tru9I	TTAA	2 cut(s)	551, 1063
TseFI	GTSAC	3 cut(s)	68, 976, 1036
Tsp45I	GTSAC	3 cut(s)	68, 976, 1036
TspDTI	ATGAA	3 cut(s)	120, 628, 1028
TspGWI	ACGGA	1 cut(s)	999
VpaK11BI	GGWCC	3 cut(s)	217, 397, 954
XceI	RCATGY	1 cut(s)	1037
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.