Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001105

Physical Location & Seq

Genomic Coordinates Reverse (-)

22385398 .. 22389612

Gene Structure 4215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGGATGGCAAAGTTCAGGCTTATGCATTAAATGGAAGAGGATTGGTTGGGGGAAATTTCCAACTTGATTACCCTAGCGTTGGGGCAACAGAAACCCTTCTGATGGCTGCATGTATGGCTGATGGAACAACTATACTGTCCAATGTTGCCAGAGAACCAGAGGTGGTTGATCTTGCTCGATTTCTGACTAAAAGTGGGGCCTGTGTGGAAGGAGCAGGAAGCAACAAGTTTGTCATCAAGGGAAAATCTCATTTGCATGGTTGTAAATGTACTATTGCACCTGATCGTATTGAAGCAGGCACGTTTATGCTTGCTGCAGCTATTACTCGCTCATTCATTTCAATTTCGCTTGTCATTCCTTCCCAAGTTTCCTGTCTGATGCAAAAACTCTTGGCCGCTGGTTGCAAAATAAGGCAATGCTCTCATGATACCTTGGACGTTTCAGCAGTGTCTCAATGTGGTGAGAATTTGCGAGGTTTTGAGGTTAAGACAGGGCCATTTCCCGGGTTTCCTACAGATCTCCAACCGCAAACAATGGCCCTGCTAACCACGTGCAATGGTTTAAGTCCTGTAGAAGAGTCTGTATTTGAAAAGCGCATGGCTCATGGTCATGTAAACGAACTGCGGAAGCTTGGAGCAAAAATTCAAGTCTGTGCAAGCTCTGCTCTGGTTTTCGGGAAAGATAATAGAAGTGGTTTGTCTGGTTCCTGCCTTGCTGCAACTGACCTCAGAGGTGGGATATCATTGGTATTAGCTGCATTGGCTGCAGAAGGTGCTACTGAGATCAGCGGTGTTGCTCATATTGACCGTGGTTATGAGAATGTAGATACAAAAATTCATATGCTGGGAGCCGATATCAAAAGATTAACGGCCCCTGCTTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0071704 GO:0080090 GO:0090304 GO:0097452 GO:1901360 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 bZIP_2

Protein Analysis

296

Amino Acids

30.98

Weight (kDa)

7.99

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	12 - 276	1.9e-54	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52660 AT3G52660 AT3G52660 AT5G28390
fragaria_vesca	FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_3g24960 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900 FvH4_6g18900
malus_domestica	MD11G1164700.v1.1 MD12G1025200.v1.1 MD14G1023900.v1.1
prunus_persica	Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.6G130600_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1 Prupe.7G108900_v2.0.a1
pyrus_communis	pycom11g13700 pycom14g02300
rosa_chinensis	RchiOBHm_Chr3g0473891 RchiOBHm_Chr5g0044751
rosa_laevigata	RLG00000023975 RLG00000034296
rosa_multiflora	Rmu_sc0000228.1_g000015 Rmu_sc0002414.1_g000043
rosa_roxburghii	Rroxscaffold_1G00036280 Rroxscaffold_6G00407690
rosa_rugosa	Rorug03G0136400 Rorug03G0136500 Rorug03G0136600 Rorug05G0217300 Rorug05G0217400 Rorug05G0217500 Rorug05G0217600 Rorug05G0217700
rosa_samantha	Rh3AG186900 Rh3BG215500 Rh3CG212200 Rh3DG211400 Rh5AG300700 Rh5BG307400 Rh5CG334500 Rh5DG317500
rosa_wichuraiana	Rw3G017090 Rw5G027820 Rw5G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	399, 530, 628, 792
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	4 cut(s)	58, 469, 645, 837
AcvI	CACGTG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	83, 106, 506
AgsI	TTSAA	4 cut(s)	296, 345, 593, 650
AluBI	AGCT	4 cut(s)	323, 634, 663, 758
AluI	AGCT	4 cut(s)	323, 634, 663, 758
Alw26I	GTCTC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	5 cut(s)	201, 396, 497, 540, 873
ApeKI	GCWGC	6 cut(s)	110, 317, 320, 719, 758, 767
ApoI	RAATTY	4 cut(s)	58, 469, 645, 837
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	4 cut(s)	201, 497, 541, 874
AsuC2I	CCSGG	2 cut(s)	507, 508
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	506
BbrPI	CACGTG	1 cut(s)	555
BbvI	GCAGC	6 cut(s)	97, 304, 332, 706, 745, 754
BccI	CCATC	3 cut(s)	2, 100, 119
BceAI	ACGGC	1 cut(s)	888
BcnI	CCSGG	2 cut(s)	507, 508
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	2 cut(s)	78, 889
BfmI	CTRYAG	4 cut(s)	318, 516, 573, 768
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	7 cut(s)	111, 318, 321, 399, 720, 759, 768
BlsI	GCNGC	7 cut(s)	112, 319, 322, 400, 721, 760, 769
Bme1390I	CCNGG	2 cut(s)	507, 508
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	4 cut(s)	201, 497, 541, 874
BmiI	GGNNCC	4 cut(s)	202, 709, 853, 876
BmrFI	CCNGG	2 cut(s)	507, 508
BmsI	GCATC	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	507, 508
BsaAI	YACGTR	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	435, 506, 811
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 106, 506
Bse3DI	GCAATG	2 cut(s)	425, 565
BseDI	CCNNGG	3 cut(s)	435, 506, 811
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	83, 106, 506
BseMI	GCAATG	2 cut(s)	425, 565
BseMII	CTCAG	2 cut(s)	745, 774
BseXI	GCAGC	6 cut(s)	97, 304, 332, 706, 745, 754
BseYI	CCCAGC	1 cut(s)	847
BshFI	GGCC	5 cut(s)	203, 398, 499, 542, 875
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	3 cut(s)	83, 106, 506
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	5 cut(s)	203, 398, 499, 542, 875
BsoBI	CYCGRG	1 cut(s)	506
Bsp143I	GATC	4 cut(s)	172, 286, 520, 786
BspACI	CCGC	4 cut(s)	399, 530, 628, 792
BspANI	GGCC	5 cut(s)	203, 398, 499, 542, 875
BspCNI	CTCAG	2 cut(s)	744, 775
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	202, 709, 853, 876
BspMAI	CTGCAG	2 cut(s)	322, 772
BsrDI	GCAATG	2 cut(s)	425, 565
BssECI	CCNNGG	3 cut(s)	435, 506, 811
BssMI	GATC	4 cut(s)	172, 286, 520, 786
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	141, 812
Bst6I	CTCTTC	2 cut(s)	34, 573
BstAPI	GCANNNNNTGC	3 cut(s)	665, 767, 776
BstBAI	YACGTR	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	301, 315, 661
BstDEI	CTNAG	2 cut(s)	731, 783
BstDSI	CCRYGG	1 cut(s)	811
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	4 cut(s)	175, 289, 523, 789
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	172, 286, 520, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 665, 764, 767, 776
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	505, 506
BstSFI	CTRYAG	4 cut(s)	318, 516, 573, 768
BstV1I	GCAGC	6 cut(s)	97, 304, 332, 706, 745, 754
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	5 cut(s)	203, 398, 499, 542, 875
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	301, 315, 661
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	4 cut(s)	201, 497, 541, 874
Cfr9I	CCCGGG	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	6 cut(s)	114, 260, 428, 601, 608, 614
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	731, 783
DpnI	GATC	4 cut(s)	174, 288, 522, 788
DpnII	GATC	4 cut(s)	172, 286, 520, 786
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	34, 573
EarI	CTCTTC	2 cut(s)	34, 573
Eco130I	CCWWGG	1 cut(s)	435
Eco32I	GATATC	2 cut(s)	744, 859
Eco72I	CACGTG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRV	GATATC	2 cut(s)	744, 859
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	6 cut(s)	117, 263, 431, 604, 611, 617
FatI	CATG	6 cut(s)	113, 259, 427, 600, 607, 613
FauNDI	CATATG	1 cut(s)	843
Fnu4HI	GCNGC	7 cut(s)	111, 318, 321, 399, 720, 759, 768
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	7 cut(s)	111, 318, 321, 399, 720, 759, 768
FspBI	CTAG	2 cut(s)	78, 889
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	7 cut(s)	111, 318, 321, 399, 720, 759, 768
GsaI	CCCAGC	1 cut(s)	851
HaeIII	GGCC	5 cut(s)	203, 398, 499, 542, 875
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	6 cut(s)	117, 263, 431, 604, 611, 617
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	4 cut(s)	105, 189, 381, 734
Hpy188III	TCNNGA	2 cut(s)	428, 679
Hpy8I	GTNNAC	1 cut(s)	619
HpyAV	CCTTC	4 cut(s)	110, 206, 372, 767
HpyCH4III	ACNGT	2 cut(s)	141, 812
HpyCH4IV	ACGT	3 cut(s)	305, 441, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 665, 764, 767, 776
HpyF3I	CTNAG	2 cut(s)	731, 783
HpySE526I	ACGT	3 cut(s)	305, 441, 554
Hsp92II	CATG	6 cut(s)	117, 263, 431, 604, 611, 617
HspAI	GCGC	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	172, 286, 520, 786
LmnI	GCTCC	3 cut(s)	215, 638, 851
Lsp1109I	GCAGC	6 cut(s)	97, 304, 332, 706, 745, 754
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	2 cut(s)	78, 889
MaeII	ACGT	3 cut(s)	305, 441, 554
MalI	GATC	4 cut(s)	174, 288, 522, 788
MboI	GATC	4 cut(s)	172, 286, 520, 786
MboII	GAAGA	3 cut(s)	51, 590, 876
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	5 cut(s)	58, 345, 469, 645, 837
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	88, 550
MnlI	CCTC	6 cut(s)	35, 157, 470, 478, 728, 740
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	4 cut(s)	32, 489, 566, 869
MslI	CAYNNNNRTG	3 cut(s)	258, 308, 612
MspA1I	CMGCKG	2 cut(s)	401, 792
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	2 cut(s)	507, 508
MwoI	GCNNNNNNNGC	5 cut(s)	119, 665, 764, 767, 776
NciI	CCSGG	2 cut(s)	507, 508
NdeI	CATATG	1 cut(s)	843
NdeII	GATC	4 cut(s)	172, 286, 520, 786
NlaIII	CATG	6 cut(s)	117, 263, 431, 604, 611, 617
NlaIV	GGNNCC	4 cut(s)	202, 709, 853, 876
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	117
PagI	TCATGA	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	99
PkrI	GCNGC	7 cut(s)	112, 319, 322, 400, 721, 760, 769
PleI	GAGTC	1 cut(s)	589
PmaCI	CACGTG	1 cut(s)	555
PmlI	CACGTG	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	555
PspCI	CACGTG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	847
PspN4I	GGNNCC	4 cut(s)	202, 709, 853, 876
PspPI	GGNCC	4 cut(s)	201, 497, 541, 874
PstI	CTGCAG	2 cut(s)	322, 772
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	3 cut(s)	258, 308, 612
SaqAI	TTAA	4 cut(s)	32, 489, 566, 869
SatI	GCNGC	7 cut(s)	111, 318, 321, 399, 720, 759, 768
Sau3AI	GATC	4 cut(s)	172, 286, 520, 786
Sau96I	GGNCC	4 cut(s)	201, 497, 541, 874
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	507, 508
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	4 cut(s)	318, 516, 573, 768
SmaI	CCCGGG	1 cut(s)	508
SmiMI	CAYNNNNRTG	3 cut(s)	258, 308, 612
Sse9I	AATT	5 cut(s)	58, 345, 469, 645, 837
SsiI	CCGC	4 cut(s)	399, 530, 628, 792
SspMI	CTAG	2 cut(s)	78, 889
StyD4I	CCNGG	2 cut(s)	505, 506
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	141, 812
TaiI	ACGT	3 cut(s)	308, 444, 557
TaqI	TCGA	1 cut(s)	181
TasI	AATT	5 cut(s)	58, 345, 469, 645, 837
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	1 cut(s)	401
Tru1I	TTAA	4 cut(s)	32, 489, 566, 869
Tru9I	TTAA	4 cut(s)	32, 489, 566, 869
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	6 cut(s)	110, 317, 320, 719, 758, 767
TspDTI	ATGAA	3 cut(s)	17, 328, 830
TspMI	CCCGGG	1 cut(s)	506
TspRI	CASTG	1 cut(s)	456
XapI	RAATTY	4 cut(s)	58, 469, 645, 837
XceI	RCATGY	1 cut(s)	117
XmaI	CCCGGG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	78, 889
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.