pycom14g02300
BZIP Family

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
1767414 .. 1770380
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02300.6

Sequence Viewer

Length: 1479 bp
ATGCCGAAAACAAGGACAAATATTTCTGGGGATGCATCTGAAAGGCATGTAGAATCTGATGAGCGGGTGGACCTGGATGGAGACAATGATCCTGAGGAAACAATAGAAGAGGAGGTTGAGTATGAAGAAGTGGAGGAGGAGGAGGAAGTTGAGGTGGAAGAAGAGGAGGAAGAGGAAGAAGAAGATCCAGAAGAGGAGGGTGAGGAAGAGGAAGAAAATAAGCAACCTGCTACAAAATCTGATGGACAGAAAAGCTCAGATGGTGATGAAGAGATGACAGTTGCTGGTGCAGAGGATGAGGAGGAGAAAAAGAAGCATGCTGAGCTTCTTGCACGTCCTCCACATGGGTCAGAGGTGTATCTTGGTGGCATTCCTCATGATGCATCCGAAGAGGATTTGAGGGGATTTTGTGAATCTATTGGGGAAGTGACTGAGGTTAGAATAATGAAGGGAAAAGATTCAGGTGAGGCCAAAGGTTATGCTTTTGTAACCTTCAGAAACAAGGAATTGGCTTCTAAGGCCATTGAGGAACTGAATAATTCGGAGTTAAAGGGAAAAAGGATTAAATGTTCAACATCTCAAGCAAAGCATAGGTTGTTCATTGGAAATGTTCCAAGAAGTTGGGGAGAGGAAGATATGAAGAAGGCTGTAACAGATATTGGACCAGGAGTCATTTCTGTGGAATTGTTGAAGGACCCACAGAATTCCAGCCGAAATCGTGGATTCGCGTTTATTGAGTATTATAATCATGCCTGTGCAGAATACTCAAGACAAAAGATGTCCACCCCAAAGTTTAAGCTTGACACAAATGCTCCAACTGTGAGCTGGGCTGATCCTAAAAATGCAGAATCCTCTGCTGCTTCTCAGGTTAAGGCTGTGTATGTCAAAAATTTACCAAAAGACATTACTCAGGATCAGCTGATCGATCTGTTTGAACATCATGGAAAGATAACAAAAGTGGTTCTCCCGCCTGCCAAAGCGGGACAGGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCAGAAAGGGCATGTGCCATGAAGGCATTGAAGAACACTGAAAAATATGAAATTGATGGTCAAGTTTTGGAGTGTTCTCTTGCAAAGCCACAATCAGATCAGAAGTCTTCTGGATCATCAAATCATCAGAAGTCGGCCTTACTTCCAACCTACCCACCACGTCTGGGGTATGGCATGGTAGGGGGTAGTCCATACGGTGGTGGCTTAGGTGCTGGATACAGCGGTCCGGGATTTGGACAACCACTGATATATGGTAGGGGACCAACTCCTGCTGGCATGGCAATGATGCCTATGCTTTTGCCTGATGGAAGGATTGGATATGTCCTGCAACAGCCCGGAGTACAACCACAGACGCCTCCACCGCAGTCCCGAGGTGGAAGAAGCGGTGGCGGTGGCAGCTCAAGTGGTGGAAGGCGAAGCGGTGAGAACAGCCGTGGCCGCCATCGCTACAACCCGTATTAA

Protein Analysis

493

Amino Acids

53.92

Weight (kDa)

4.94

Isoelectric Point (pI)

63.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
Acc36I ACCTGC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 1214
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 1 cut(s) 728
AciI CCGC 9 cut(s) 64, 968, 980, 1239, 1379, 1401, 1407, 1437, 1456
AclWI GGATC 5 cut(s) 83, 179, 827, 921, 1138
AcoI YGGCCR 1 cut(s) 1453
AcsI RAATTY 2 cut(s) 703, 889
AcuI CTGAAG 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 1370
AfaI GTAC 1 cut(s) 1359
AfiI CCNNNNNNNGG 4 cut(s) 344, 1181, 1214, 1250
AgsI TTSAA 4 cut(s) 573, 691, 935, 1048
AhdI GACNNNNNGTC 1 cut(s) 668
AjiI CACGTC 2 cut(s) 335, 1178
AjnI CCWGG 2 cut(s) 72, 664
AloI GAACNNNNNNTCC 2 cut(s) 553, 585
AluBI AGCT 6 cut(s) 255, 325, 799, 825, 919, 1416
AluI AGCT 6 cut(s) 255, 325, 799, 825, 919, 1416
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 1 cut(s) 75
Alw44I GTGCAC 1 cut(s) 1010
AlwI GGATC 5 cut(s) 83, 179, 827, 921, 1138
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 1386
AoxI GGCC 4 cut(s) 468, 519, 1152, 1453
ApaLI GTGCAC 1 cut(s) 1010
ApeKI GCWGC 2 cut(s) 857, 1413
ApoI RAATTY 2 cut(s) 703, 889
Asp700I GAANNNNTTC 1 cut(s) 457
AspS9I GGNCC 5 cut(s) 70, 662, 694, 1241, 1277
AsuC2I CCSGG 2 cut(s) 1245, 1353
AsuHPI GGTGA 4 cut(s) 212, 275, 476, 1451
AvaI CYCGRG 1 cut(s) 1386
AvaII GGWCC 5 cut(s) 70, 662, 694, 1241, 1277
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 1014
BaeI ACNNNNGTAYC 2 cut(s) 1225, 1258
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 844, 1425
BccI CCATC 6 cut(s) 71, 236, 254, 1067, 1316, 1467
BceAI ACGGC 1 cut(s) 1434
BciT130I CCWGG 2 cut(s) 74, 666
BciVI GTATCC 1 cut(s) 1226
BcnI CCSGG 2 cut(s) 1245, 1353
BcoDI GTCTC 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 235
BfuI GTATCC 1 cut(s) 1226
BglI GCCNNNNNGGC 1 cut(s) 1040
BisI GCNGC 3 cut(s) 858, 1414, 1456
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 859, 1415, 1457
Bme1390I CCNGG 4 cut(s) 74, 666, 1245, 1353
Bme18I GGWCC 5 cut(s) 70, 662, 694, 1241, 1277
BmeRI GACNNNNNGTC 1 cut(s) 668
BmeT110I CYCGRG 1 cut(s) 1386
BmgBI CACGTC 2 cut(s) 335, 1178
BmgT120I GGNCC 5 cut(s) 70, 662, 694, 1241, 1277
BmiI GGNNCC 2 cut(s) 696, 1278
BmrFI CCNGG 4 cut(s) 74, 666, 1245, 1353
BmsI GCATC 5 cut(s) 22, 44, 370, 392, 1293
BpiI GAAGAC 1 cut(s) 1116
Bpu10I CCTNAGC 1 cut(s) 1222
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 3 cut(s) 564, 751, 1402
BpuMI CCSGG 2 cut(s) 1245, 1353
Bsa29I ATCGAT 1 cut(s) 924
BsaHI GRCGYC 1 cut(s) 1370
BsaJI CCNNGG 2 cut(s) 1387, 1450
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 796, 826
Bsc4I CCNNNNNNNGG 4 cut(s) 344, 1181, 1214, 1250
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 1305
BseBI CCWGG 2 cut(s) 74, 666
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 2 cut(s) 1387, 1450
BseGI GGATG 4 cut(s) 37, 82, 301, 383
BseLI CCNNNNNNNGG 4 cut(s) 344, 1181, 1214, 1250
BseMI GCAATG 1 cut(s) 1305
BseMII CTCAG 6 cut(s) 84, 270, 312, 423, 878, 923
BseRI GAGGAG 8 cut(s) 125, 149, 152, 155, 179, 209, 314, 317
BseSI GKGCMC 1 cut(s) 1014
BseXI GCAGC 2 cut(s) 844, 1425
BseYI CCCAGC 1 cut(s) 825
BsgI GTGCAG 2 cut(s) 309, 777
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 4 cut(s) 470, 521, 1154, 1455
BshVI ATCGAT 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 1014
BsiHKCI CYCGRG 1 cut(s) 1386
BsiSI CCGG 2 cut(s) 1244, 1353
BslFI GGGAC 3 cut(s) 996, 1290, 1369
BslI CCNNNNNNNGG 4 cut(s) 344, 1181, 1214, 1250
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 3 cut(s) 996, 1290, 1369
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 4 cut(s) 470, 521, 1154, 1455
BsoBI CYCGRG 1 cut(s) 1386
Bsp1286I GDGCHC 1 cut(s) 1014
Bsp143I GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 9 cut(s) 64, 968, 980, 1239, 1379, 1401, 1407, 1437, 1456
BspANI GGCC 4 cut(s) 470, 521, 1154, 1455
BspCNI CTCAG 6 cut(s) 85, 269, 313, 424, 877, 922
BspDI ATCGAT 1 cut(s) 924
BspFNI CGCG 1 cut(s) 728
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 696, 1278
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 5 cut(s) 83, 179, 827, 921, 1138
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 1305
BssECI CCNNGG 2 cut(s) 1387, 1450
BssMI GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
BssNI GRCGYC 1 cut(s) 1370
Bst2UI CCWGG 2 cut(s) 74, 666
Bst4CI ACNGT 3 cut(s) 280, 820, 1214
Bst6I CTCTTC 7 cut(s) 102, 156, 165, 186, 201, 264, 384
BstACI GRCGYC 1 cut(s) 1370
BstC8I GCNNGC 3 cut(s) 318, 972, 1291
BstDEI CTNAG 8 cut(s) 93, 256, 321, 432, 516, 864, 909, 1222
BstDSI CCRYGG 1 cut(s) 1450
BstF5I GGATG 4 cut(s) 37, 82, 301, 383
BstFNI CGCG 1 cut(s) 728
BstKTI GATC 8 cut(s) 91, 187, 835, 916, 924, 928, 1117, 1133
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
BstMWI GCNNNNNNNGC 9 cut(s) 322, 518, 1025, 1040, 1295, 1378, 1413, 1455, 1461
BstNI CCWGG 2 cut(s) 74, 666
BstNSI RCATGY 3 cut(s) 50, 320, 1032
BstSCI CCNGG 4 cut(s) 72, 664, 1243, 1351
BstSLI GKGCMC 1 cut(s) 1014
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 844, 1425
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 621
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 924
Bsu36I CCTNAGG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 1226
BsuRI GGCC 4 cut(s) 470, 521, 1154, 1455
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 1 cut(s) 1450
BtgZI GCGATG 1 cut(s) 1445
BtrI CACGTC 2 cut(s) 335, 1178
BtsCI GGATG 4 cut(s) 37, 82, 301, 383
BtsIMutI CAGTG 2 cut(s) 1053, 1259
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 318, 972, 1291
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 5 cut(s) 70, 662, 694, 1241, 1277
ClaI ATCGAT 1 cut(s) 924
CpoI CGGWCCG 1 cut(s) 1241
CseI GACGC 1 cut(s) 1378
Csp6I GTAC 1 cut(s) 1358
CspI CGGWCCG 1 cut(s) 1241
CviQI GTAC 1 cut(s) 1358
DdeI CTNAG 8 cut(s) 93, 256, 321, 432, 516, 864, 909, 1222
DpnI GATC 8 cut(s) 90, 186, 834, 915, 923, 927, 1116, 1132
DpnII GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
DriI GACNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 1453
Eam1104I CTCTTC 7 cut(s) 102, 156, 165, 186, 201, 264, 384
Eam1105I GACNNNNNGTC 1 cut(s) 668
EarI CTCTTC 7 cut(s) 102, 156, 165, 186, 201, 264, 384
Eco47I GGWCC 5 cut(s) 70, 662, 694, 1241, 1277
Eco57I CTGAAG 1 cut(s) 478
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 1386
EcoO109I RGGNCCY 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 72, 664
EcoT22I ATGCAT 2 cut(s) 37, 385
FalI AAGNNNNNCTT 2 cut(s) 1139, 1171
FaqI GGGAC 3 cut(s) 996, 1290, 1369
FauI CCCGC 3 cut(s) 57, 973, 975
Fnu4HI GCNGC 3 cut(s) 858, 1414, 1456
FokI GGATG 4 cut(s) 44, 89, 308, 370
Fsp4HI GCNGC 3 cut(s) 858, 1414, 1456
GluI GCNGC 3 cut(s) 858, 1414, 1456
GsaI CCCAGC 1 cut(s) 829
HaeIII GGCC 4 cut(s) 470, 521, 1154, 1455
HapII CCGG 2 cut(s) 1244, 1353
HgaI GACGC 1 cut(s) 1378
Hin1I GRCGYC 1 cut(s) 1370
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 6 cut(s) 53, 413, 458, 669, 723, 848
HpaII CCGG 2 cut(s) 1244, 1353
HphI GGTGA 4 cut(s) 212, 275, 476, 1451
Hpy166II GTNNAC 3 cut(s) 70, 783, 1012
Hpy188III TCNNGA 7 cut(s) 92, 188, 377, 768, 911, 1128, 1386
Hpy8I GTNNAC 3 cut(s) 70, 783, 1012
HpyAV CCTTC 7 cut(s) 442, 502, 637, 685, 1033, 1320, 1422
HpyCH4III ACNGT 3 cut(s) 280, 820, 1214
HpyCH4IV ACGT 2 cut(s) 334, 1177
HpyF10VI GCNNNNNNNGC 9 cut(s) 322, 518, 1025, 1040, 1295, 1378, 1413, 1455, 1461
HpyF3I CTNAG 8 cut(s) 93, 256, 321, 432, 516, 864, 909, 1222
HpySE526I ACGT 2 cut(s) 334, 1177
Hsp92I GRCGYC 1 cut(s) 1370
Kzo9I GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 2 cut(s) 844, 1425
LweI GCATC 5 cut(s) 22, 44, 370, 392, 1293
MaeII ACGT 2 cut(s) 334, 1177
MaeIII GTNAC 3 cut(s) 427, 487, 649
MalI GATC 8 cut(s) 90, 186, 834, 915, 923, 927, 1116, 1132
MbiI CCGCTC 1 cut(s) 64
MboI GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 1014
MluCI AATT 6 cut(s) 506, 538, 683, 703, 889, 1068
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 2 cut(s) 839, 1187
Mph1103I ATGCAT 2 cut(s) 37, 385
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 5 cut(s) 548, 564, 795, 870, 1477
MslI CAYNNNNRTG 3 cut(s) 677, 753, 1298
MspA1I CMGCKG 2 cut(s) 919, 1239
MspI CCGG 2 cut(s) 1244, 1353
MspR9I CCNGG 4 cut(s) 74, 666, 1245, 1353
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 74, 666
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 9 cut(s) 322, 518, 1025, 1040, 1295, 1378, 1413, 1455, 1461
NciI CCSGG 2 cut(s) 1245, 1353
NdeII GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
NlaIV GGNNCC 2 cut(s) 696, 1278
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 2 cut(s) 37, 385
NspI RCATGY 3 cut(s) 50, 320, 1032
PaeI GCATGC 1 cut(s) 320
PagI TCATGA 1 cut(s) 376
PctI GAATGC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 5 cut(s) 53, 413, 458, 723, 848
PflMI CCANNNNNTGG 1 cut(s) 1214
PfoI TCCNGGA 1 cut(s) 1243
PkrI GCNGC 3 cut(s) 859, 1415, 1457
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PpuMI RGGWCCY 1 cut(s) 694
PsiI TTATAA 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 72, 664
PspFI CCCAGC 1 cut(s) 825
PspGI CCWGG 2 cut(s) 72, 664
PspN4I GGNNCC 2 cut(s) 696, 1278
PspPI GGNCC 5 cut(s) 70, 662, 694, 1241, 1277
PspPPI RGGWCCY 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 919
RsaI GTAC 1 cut(s) 1359
RsaNI GTAC 1 cut(s) 1358
RseI CAYNNNNRTG 3 cut(s) 677, 753, 1298
Rsr2I CGGWCCG 1 cut(s) 1241
RsrII CGGWCCG 1 cut(s) 1241
SaqAI TTAA 5 cut(s) 548, 564, 795, 870, 1477
SatI GCNGC 3 cut(s) 858, 1414, 1456
Sau3AI GATC 8 cut(s) 88, 184, 832, 913, 921, 925, 1114, 1130
Sau96I GGNCC 5 cut(s) 70, 662, 694, 1241, 1277
SchI GAGTC 1 cut(s) 678
ScrFI CCNGG 4 cut(s) 74, 666, 1245, 1353
SduI GDGCHC 1 cut(s) 1014
SfaNI GCATC 5 cut(s) 22, 44, 370, 392, 1293
SinI GGWCC 5 cut(s) 70, 662, 694, 1241, 1277
SmiMI CAYNNNNRTG 3 cut(s) 677, 753, 1298
SmlI CTYRAG 3 cut(s) 579, 766, 1417
SmoI CTYRAG 3 cut(s) 579, 766, 1417
SphI GCATGC 1 cut(s) 320
Sse9I AATT 6 cut(s) 506, 538, 683, 703, 889, 1068
SsiI CCGC 9 cut(s) 64, 968, 980, 1239, 1379, 1401, 1407, 1437, 1456
SspI AATATT 1 cut(s) 22
StyD4I CCNGG 4 cut(s) 72, 664, 1243, 1351
TaaI ACNGT 3 cut(s) 280, 820, 1214
TaiI ACGT 2 cut(s) 337, 1180
TaqI TCGA 1 cut(s) 924
TasI AATT 6 cut(s) 506, 538, 683, 703, 889, 1068
TatI WGTACW 1 cut(s) 1357
TauI GCSGC 1 cut(s) 1458
TfiI GAWTC 5 cut(s) 53, 413, 458, 723, 848
Tru1I TTAA 5 cut(s) 548, 564, 795, 870, 1477
Tru9I TTAA 5 cut(s) 548, 564, 795, 870, 1477
TscAI CASTG 2 cut(s) 1060, 1266
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 857, 1413
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 7 cut(s) 138, 282, 461, 589, 653, 1052, 1080
TspRI CASTG 2 cut(s) 1060, 1266
Van91I CCANNNNNTGG 1 cut(s) 1214
VneI GTGCAC 1 cut(s) 1010
VpaK11BI GGWCC 5 cut(s) 70, 662, 694, 1241, 1277
XapI RAATTY 2 cut(s) 703, 889
XceI RCATGY 3 cut(s) 50, 320, 1032
XcmI CCANNNNNNNNNTGG 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 457
Zsp2I ATGCAT 2 cut(s) 37, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.