Prupe.7G108900_v2.0.a1
BZIP Family

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
13707889 .. 13712895
5007 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G108900.3

Sequence Viewer

Length: 1476 bp
ATGCCGAAAACAAGGGCGAATGCTTCTGGAGATGCATCTGAAAGACCTATAGAATCTGAAGAGCGGGTGGACCTTGATGGAGACAATGATCCTGAGGAAACAATAGAAGAAGAGGTTGAGTATGAAGAAGTAGAGGAAGAGGAGGAAGTGGAAGAGGTGGAAGAGGAAGAGGAAGAAGAGGAAGAAGAAGATCCAGAAGAGGGTGAGGAAGAGGGAGAAAACAAGGGAGCTGCTACAAAATCTGATGGACAGAAAAGCTCAGATGGTGATGAAGAGATGACAGTTGTTGACGGAGAGGAGGAAGAAAAAAAGAAGCATGCGGAGCTTCTTGCACGCCCTCCGCATGGATCAGAGGTGTATCTTGGTGGCATTCCTCATGATGCATCTGAAGAGGATTTGAGGGGATTTTGTGAATCTATTGGGGAAGTTACTGAGGTTAGAATAATGAAGGGAAAAGATTCAGGTGAGGCCAAAGGTTATGCTTTTGTCACCTTCAGAAACAAGGAGTTGGCTTCTAAGGCCATTGAGGAACTGAATAATTCTGAGTTAAAGGGAAAAAGGATTAAATGTTCTACATCTCAAGCAAAGCATCGGTTGTTTATTGGAAATGTTCCCAGAAATTGGGGAGAGGAGGATATGAAGAAGGCTGTAACAGACATTGGACCAGGAGTCATTTCTGTGGAACTGCTGAAGGACCCACAGAACTCCAGCCGGAATCGTGGATTTGCTTTCATTGAGTATTATAATCATGCATGTGCAGAATATTCAAGACAAAAGATGTCAAGCCCAAAATTTAAGCTCGACACCAATGCTCCTACTGTGAGCTGGGCTGATCCTAAAAATACAGAATCCTCTGCTGCTTCTCAGGTGAAGGCTGTGTATGTCAAGAATTTACCAAAAGACATTACTCAGGAGAGTCTAAAGGAGCTGTTTGAACGTCATGGAAAGATCACAAAGGTGGTTCTCCCACCTGCAAAAGCAGGACATGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCGGAGAGGGCATGTGCAATGAAGGCATTGAAGAACACTGAAAAATATGAAATTGATGGTCAAGTTTTGGAATGCTCTCTTGCAAAGCCACAAGCAGATCAGAAGTCTTCTGGATCATCAAATCATCAGAAGTCGCCCTTACTTCCAACCTACCCACCACGTCTCAGTTATGGCATGGGAGGGAGTAGTCCATATGGTGGATTGAGTGCTGGATATGGTGGCGGTGCAGGGTTTGCCCAACCACTGATCTATGGTAGGGGACCAACTCCTGCTGGCATGGCAATGATGCCTATGCTTTTGCCCGATGGAAGGATTGGATATGTCCTGCAACAACCTGGAATGCAACCACACACCCCTCCACCGCAGTCTAGAGGTGGAAGAAGTGGTGGTGGCAACTCAAGTGGTGGAAGGCGCAGTGGTGACAACAATCGTGGCCGTAGTCGCTATAACCCATATTAA

Protein Analysis

492

Amino Acids

53.81

Weight (kDa)

4.97

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AarI CACCTGC 1 cut(s) 979
Acc36I ACCTGC 1 cut(s) 979
AccB7I CCANNNNNTGG 2 cut(s) 621, 1214
AccBSI CCGCTC 1 cut(s) 64
AciI CCGC 6 cut(s) 64, 320, 341, 1019, 1239, 1379
AclWI GGATC 5 cut(s) 83, 185, 355, 827, 1138
AcoI YGGCCR 1 cut(s) 1450
AcsI RAATTY 2 cut(s) 791, 889
AcuI CTGAAG 4 cut(s) 78, 408, 478, 710
AfiI CCNNNNNNNGG 5 cut(s) 200, 344, 621, 1214, 1326
AgsI TTSAA 3 cut(s) 768, 935, 1048
AhdI GACNNNNNGTC 1 cut(s) 668
AjiI CACGTC 1 cut(s) 1178
AjnI CCWGG 2 cut(s) 664, 1351
AleI CACNNNNGTG 1 cut(s) 956
AloI GAACNNNNNNTCC 2 cut(s) 553, 585
AluBI AGCT 6 cut(s) 230, 258, 325, 799, 825, 928
AluI AGCT 6 cut(s) 230, 258, 325, 799, 825, 928
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 2 cut(s) 75, 1184
Alw44I GTGCAC 1 cut(s) 1010
AlwI GGATC 5 cut(s) 83, 185, 355, 827, 1138
AoxI GGCC 3 cut(s) 468, 519, 1450
ApaLI GTGCAC 1 cut(s) 1010
ApeKI GCWGC 2 cut(s) 230, 857
ApoI RAATTY 2 cut(s) 791, 889
Asp700I GAANNNNTTC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 1431
AspS9I GGNCC 4 cut(s) 70, 662, 694, 1277
AsuHPI GGTGA 6 cut(s) 215, 278, 476, 481, 880, 1448
AvaII GGWCC 4 cut(s) 70, 662, 694, 1277
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 1014
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 2 cut(s) 217, 844
BccI CCATC 5 cut(s) 71, 239, 257, 1067, 1316
BceAI ACGGC 1 cut(s) 1437
BcgI CGANNNNNNTGC 2 cut(s) 791, 825
BciT130I CCWGG 2 cut(s) 666, 1353
BcoDI GTCTC 2 cut(s) 75, 1184
BfaI CTAG 1 cut(s) 1386
BfmI CTRYAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 979
BisI GCNGC 2 cut(s) 231, 858
BlsI GCNGC 2 cut(s) 232, 859
Bme1390I CCNGG 2 cut(s) 666, 1353
Bme18I GGWCC 4 cut(s) 70, 662, 694, 1277
BmeRI GACNNNNNGTC 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 1178
BmgT120I GGNCC 4 cut(s) 70, 662, 694, 1277
BmiI GGNNCC 2 cut(s) 696, 1278
BmrFI CCNGG 2 cut(s) 666, 1353
BmsI GCATC 6 cut(s) 22, 44, 370, 392, 598, 1293
BpiI GAAGAC 1 cut(s) 1116
BpmI CTGGAG 2 cut(s) 48, 691
BpuEI CTTGAG 2 cut(s) 564, 1399
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 344, 621, 1214, 1326
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 2 cut(s) 1041, 1305
BseBI CCWGG 2 cut(s) 666, 1353
BseLI CCNNNNNNNGG 5 cut(s) 200, 344, 621, 1214, 1326
BseMI GCAATG 2 cut(s) 1041, 1305
BseMII CTCAG 7 cut(s) 84, 273, 423, 534, 878, 923, 1195
BseRI GAGGAG 3 cut(s) 155, 311, 644
BseSI GKGCMC 1 cut(s) 1014
BseXI GCAGC 2 cut(s) 217, 844
BseYI CCCAGC 1 cut(s) 825
BsgI GTGCAG 2 cut(s) 777, 1263
BshFI GGCC 3 cut(s) 470, 521, 1452
BsiHKAI GWGCWC 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 712
BslFI GGGAC 1 cut(s) 1290
BslI CCNNNNNNNGG 5 cut(s) 200, 344, 621, 1214, 1326
BsmAI GTCTC 2 cut(s) 75, 1184
BsmBI CGTCTC 1 cut(s) 1184
BsmFI GGGAC 1 cut(s) 1290
BsmI GAATGC 4 cut(s) 25, 369, 1094, 1362
BsnI GGCC 3 cut(s) 470, 521, 1452
Bsp1286I GDGCHC 1 cut(s) 1014
Bsp143I GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
BspACI CCGC 6 cut(s) 64, 320, 341, 1019, 1239, 1379
BspANI GGCC 3 cut(s) 470, 521, 1452
BspCNI CTCAG 7 cut(s) 85, 272, 424, 535, 877, 922, 1194
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 696, 1278
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 5 cut(s) 83, 185, 355, 827, 1138
BspQI GCTCTTC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 1041, 1305
BssMI GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
Bst2UI CCWGG 2 cut(s) 666, 1353
Bst4CI ACNGT 2 cut(s) 283, 820
BstAPI GCANNNNNTGC 1 cut(s) 1250
BstC8I GCNNGC 3 cut(s) 318, 334, 1291
BstDEI CTNAG 8 cut(s) 93, 259, 432, 516, 543, 864, 909, 1181
BstHHI GCGC 1 cut(s) 1431
BstKTI GATC 8 cut(s) 91, 193, 350, 835, 951, 1117, 1133, 1266
BstMAI GTCTC 2 cut(s) 75, 1184
BstMBI GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
BstMWI GCNNNNNNNGC 7 cut(s) 322, 518, 1025, 1040, 1250, 1295, 1458
BstNI CCWGG 2 cut(s) 666, 1353
BstNSI RCATGY 3 cut(s) 320, 756, 1032
BstSCI CCNGG 2 cut(s) 664, 1351
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 1014
BstV1I GCAGC 2 cut(s) 217, 844
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 3 cut(s) 470, 521, 1452
BtrI CACGTC 1 cut(s) 1178
BtsI GCAGTG 1 cut(s) 1438
BtsIMutI CAGTG 3 cut(s) 1053, 1259, 1438
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 3 cut(s) 318, 334, 1291
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 1431
Cfr13I GGNCC 4 cut(s) 70, 662, 694, 1277
CspCI CAANNNNNGTGG 4 cut(s) 1399, 1429, 1434, 1464
DdeI CTNAG 8 cut(s) 93, 259, 432, 516, 543, 864, 909, 1181
DpnI GATC 8 cut(s) 90, 192, 349, 834, 950, 1116, 1132, 1265
DpnII GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
DriI GACNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 1450
Eam1105I GACNNNNNGTC 1 cut(s) 668
Eco47I GGWCC 4 cut(s) 70, 662, 694, 1277
Eco57I CTGAAG 4 cut(s) 78, 408, 478, 710
Eco81I CCTNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 664, 1351
EcoT22I ATGCAT 3 cut(s) 37, 385, 754
Esp3I CGTCTC 1 cut(s) 1184
FalI AAGNNNNNCTT 2 cut(s) 1139, 1171
FaqI GGGAC 1 cut(s) 1290
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 1210
Fnu4HI GCNGC 2 cut(s) 231, 858
Fsp4HI GCNGC 2 cut(s) 231, 858
FspBI CTAG 1 cut(s) 1386
GlaI GCGC 1 cut(s) 1430
GluI GCNGC 2 cut(s) 231, 858
GsaI CCCAGC 1 cut(s) 829
GsuI CTGGAG 2 cut(s) 48, 691
HaeIII GGCC 3 cut(s) 470, 521, 1452
HapII CCGG 1 cut(s) 712
HhaI GCGC 1 cut(s) 1431
Hin6I GCGC 1 cut(s) 1429
HinP1I GCGC 1 cut(s) 1429
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 7 cut(s) 53, 413, 458, 669, 715, 848, 916
HpaII CCGG 1 cut(s) 712
HphI GGTGA 6 cut(s) 215, 278, 476, 481, 880, 1448
Hpy166II GTNNAC 3 cut(s) 70, 289, 1012
Hpy188III TCNNGA 9 cut(s) 27, 92, 194, 377, 768, 886, 911, 1128, 1386
Hpy8I GTNNAC 3 cut(s) 70, 289, 1012
HpyAV CCTTC 8 cut(s) 442, 502, 637, 685, 865, 1033, 1320, 1419
HpyCH4III ACNGT 2 cut(s) 283, 820
HpyCH4IV ACGT 2 cut(s) 937, 1177
HpyF10VI GCNNNNNNNGC 7 cut(s) 322, 518, 1025, 1040, 1250, 1295, 1458
HpyF3I CTNAG 8 cut(s) 93, 259, 432, 516, 543, 864, 909, 1181
HpySE526I ACGT 2 cut(s) 937, 1177
HspAI GCGC 1 cut(s) 1429
Kzo9I GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 4 cut(s) 227, 322, 817, 925
Lsp1109I GCAGC 2 cut(s) 217, 844
LweI GCATC 6 cut(s) 22, 44, 370, 392, 598, 1293
MaeI CTAG 1 cut(s) 1386
MaeII ACGT 2 cut(s) 937, 1177
MaeIII GTNAC 4 cut(s) 427, 487, 649, 1436
MalI GATC 8 cut(s) 90, 192, 349, 834, 950, 1116, 1132, 1265
MbiI CCGCTC 1 cut(s) 64
MboI GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 1014
MluCI AATT 5 cut(s) 538, 619, 791, 889, 1068
MlyI GAGTC 2 cut(s) 678, 925
MmeI TCCRAC 1 cut(s) 1187
Mph1103I ATGCAT 3 cut(s) 37, 385, 754
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 4 cut(s) 548, 564, 795, 1474
MslI CAYNNNNRTG 4 cut(s) 677, 753, 956, 1298
MspI CCGG 1 cut(s) 712
MspR9I CCNGG 2 cut(s) 666, 1353
Mva1269I GAATGC 4 cut(s) 25, 369, 1094, 1362
MvaI CCWGG 2 cut(s) 666, 1353
MwoI GCNNNNNNNGC 7 cut(s) 322, 518, 1025, 1040, 1250, 1295, 1458
NdeI CATATG 1 cut(s) 1210
NdeII GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
NlaIV GGNNCC 2 cut(s) 696, 1278
NmuCI GTSAC 2 cut(s) 487, 1436
NsiI ATGCAT 3 cut(s) 37, 385, 754
NspI RCATGY 3 cut(s) 320, 756, 1032
OliI CACNNNNGTG 1 cut(s) 956
PaeI GCATGC 1 cut(s) 320
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 979
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 4 cut(s) 25, 369, 1094, 1362
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 5 cut(s) 53, 413, 458, 715, 848
PflMI CCANNNNNTGG 2 cut(s) 621, 1214
PkrI GCNGC 2 cut(s) 232, 859
PleI GAGTC 2 cut(s) 677, 924
PpsI GAGTC 2 cut(s) 677, 924
PpuMI RGGWCCY 1 cut(s) 694
PsiI TTATAA 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 664, 1351
PspFI CCCAGC 1 cut(s) 825
PspGI CCWGG 2 cut(s) 664, 1351
PspN4I GGNNCC 2 cut(s) 696, 1278
PspPI GGNCC 4 cut(s) 70, 662, 694, 1277
PspPPI RGGWCCY 1 cut(s) 694
PsuI RGATCY 1 cut(s) 190
RseI CAYNNNNRTG 4 cut(s) 677, 753, 956, 1298
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 548, 564, 795, 1474
SatI GCNGC 2 cut(s) 231, 858
Sau3AI GATC 8 cut(s) 88, 190, 347, 832, 948, 1114, 1130, 1263
Sau96I GGNCC 4 cut(s) 70, 662, 694, 1277
SchI GAGTC 2 cut(s) 678, 925
ScrFI CCNGG 2 cut(s) 666, 1353
SduI GDGCHC 1 cut(s) 1014
SfaNI GCATC 6 cut(s) 22, 44, 370, 392, 598, 1293
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 4 cut(s) 70, 662, 694, 1277
SmiMI CAYNNNNRTG 4 cut(s) 677, 753, 956, 1298
SmlI CTYRAG 2 cut(s) 579, 1414
SmoI CTYRAG 2 cut(s) 579, 1414
SphI GCATGC 1 cut(s) 320
Sse9I AATT 5 cut(s) 538, 619, 791, 889, 1068
SsiI CCGC 6 cut(s) 64, 320, 341, 1019, 1239, 1379
SspI AATATT 1 cut(s) 764
SspMI CTAG 1 cut(s) 1386
StyD4I CCNGG 2 cut(s) 664, 1351
TaaI ACNGT 2 cut(s) 283, 820
TaiI ACGT 2 cut(s) 940, 1180
TaqI TCGA 1 cut(s) 801
TasI AATT 5 cut(s) 538, 619, 791, 889, 1068
TfiI GAWTC 5 cut(s) 53, 413, 458, 715, 848
Tru1I TTAA 4 cut(s) 548, 564, 795, 1474
Tru9I TTAA 4 cut(s) 548, 564, 795, 1474
TscAI CASTG 3 cut(s) 1060, 1266, 1438
TseFI GTSAC 2 cut(s) 487, 1436
TseI GCWGC 2 cut(s) 230, 857
Tsp45I GTSAC 2 cut(s) 487, 1436
TspDTI ATGAA 8 cut(s) 138, 285, 461, 653, 721, 1002, 1052, 1080
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 3 cut(s) 1060, 1266, 1438
Van91I CCANNNNNTGG 2 cut(s) 621, 1214
VneI GTGCAC 1 cut(s) 1010
VpaK11BI GGWCC 4 cut(s) 70, 662, 694, 1277
XapI RAATTY 2 cut(s) 791, 889
XbaI TCTAGA 1 cut(s) 1385
XceI RCATGY 3 cut(s) 320, 756, 1032
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 1 cut(s) 1386
Zsp2I ATGCAT 3 cut(s) 37, 385, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.