PQQ-like domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AMP-binding | PF00501 | 20 - 188 | 2e-20 | AMP-binding enzyme |
| AMP-binding_C | PF13193 | 255 - 333 | 4.1e-12 | AMP-binding enzyme C-terminal domain |
| PQQ_2 | PF13360 | 547 - 713 | 4.7e-08 | Outer membrane protein assembly factor BamB |
| Beta-prop_ACSF4 | PF13570 | 554 - 903 | 4.7e-104 | Beta-alanine-activating enzyme, beta-propeller |
| PQQ_2 | PF13360 | 697 - 904 | 1.1e-07 | Outer membrane protein assembly factor BamB |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2433 |
| Acc36I | ACCTGC | 1 cut(s) | 3108 |
| AccB1I | GGYRCC | 1 cut(s) | 2581 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2344 |
| AccI | GTMKAC | 2 cut(s) | 326, 589 |
| AccII | CGCG | 1 cut(s) | 2520 |
| AciI | CCGC | 3 cut(s) | 507, 1578, 2376 |
| AclI | AACGTT | 1 cut(s) | 2625 |
| AclWI | GGATC | 5 cut(s) | 92, 343, 1128, 2210, 2386 |
| AcoI | YGGCCR | 3 cut(s) | 107, 2647, 3058 |
| AcsI | RAATTY | 4 cut(s) | 308, 927, 2141, 2309 |
| AcuI | CTGAAG | 5 cut(s) | 315, 435, 695, 1005, 1221 |
| AcyI | GRCGYC | 1 cut(s) | 2157 |
| AfaI | GTAC | 6 cut(s) | 367, 775, 891, 962, 1263, 1953 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 422, 679, 920, 1439, 2344, 2591, 2794, 2801 |
| AflIII | ACRYGT | 2 cut(s) | 749, 2734 |
| AgeI | ACCGGT | 1 cut(s) | 1439 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2287, 2319, 2668, 2700, 2811, 2843 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2194, 2226 |
| Alw21I | GWGCWC | 3 cut(s) | 411, 1447, 3096 |
| Alw26I | GTCTC | 8 cut(s) | 132, 947, 1223, 1560, 2035, 2133, 2177, 2950 |
| Alw44I | GTGCAC | 1 cut(s) | 3092 |
| AlwI | GGATC | 5 cut(s) | 92, 343, 1128, 2210, 2386 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2849 |
| Ama87I | CYCGRG | 1 cut(s) | 2929 |
| AoxI | GGCC | 8 cut(s) | 107, 281, 1152, 1251, 1795, 2502, 2647, 3058 |
| ApaLI | GTGCAC | 1 cut(s) | 3092 |
| ApeKI | GCWGC | 4 cut(s) | 430, 1580, 2437, 2634 |
| ApoI | RAATTY | 4 cut(s) | 308, 927, 2141, 2309 |
| AsiGI | ACCGGT | 1 cut(s) | 1439 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| AspLEI | GCGC | 1 cut(s) | 1585 |
| AspS9I | GGNCC | 5 cut(s) | 1153, 1796, 2705, 2720, 2833 |
| AsuHPI | GGTGA | 7 cut(s) | 1079, 1106, 1351, 2240, 2336, 2923, 3033 |
| AsuII | TTCGAA | 2 cut(s) | 1633, 2105 |
| AvaI | CYCGRG | 1 cut(s) | 2929 |
| AvaII | GGWCC | 3 cut(s) | 2705, 2720, 2833 |
| BaeGI | GKGCMC | 1 cut(s) | 3096 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 765, 798 |
| BalI | TGGCCA | 2 cut(s) | 109, 2649 |
| BanI | GGYRCC | 1 cut(s) | 2581 |
| BanII | GRGCYC | 1 cut(s) | 411 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 72, 104 |
| BauI | CACGAG | 1 cut(s) | 3007 |
| BbsI | GAAGAC | 4 cut(s) | 168, 839, 1084, 2826 |
| Bbv12I | GWGCWC | 3 cut(s) | 411, 1447, 3096 |
| BbvI | GCAGC | 4 cut(s) | 442, 1592, 2424, 2621 |
| BciVI | GTATCC | 1 cut(s) | 2344 |
| BclI | TGATCA | 2 cut(s) | 466, 612 |
| BcoDI | GTCTC | 8 cut(s) | 132, 947, 1223, 1560, 2035, 2133, 2177, 2950 |
| BfaI | CTAG | 9 cut(s) | 596, 1089, 1178, 1415, 1644, 1718, 2087, 2192, 2789 |
| BfmI | CTRYAG | 3 cut(s) | 808, 2410, 2764 |
| BfuAI | ACCTGC | 1 cut(s) | 3108 |
| BfuI | GTATCC | 1 cut(s) | 2344 |
| BisI | GCNGC | 5 cut(s) | 431, 1578, 1581, 2438, 2635 |
| BlsI | GCNGC | 5 cut(s) | 432, 1579, 1582, 2439, 2636 |
| BmcAI | AGTACT | 1 cut(s) | 1263 |
| Bme18I | GGWCC | 3 cut(s) | 2705, 2720, 2833 |
| BmeT110I | CYCGRG | 1 cut(s) | 2929 |
| BmgT120I | GGNCC | 5 cut(s) | 1153, 1796, 2705, 2720, 2833 |
| BmiI | GGNNCC | 5 cut(s) | 2021, 2583, 2596, 2834, 2835 |
| BmrI | ACTGGG | 1 cut(s) | 351 |
| BmsI | GCATC | 8 cut(s) | 390, 1446, 1501, 1594, 2065, 2243, 2855, 2906 |
| BmuI | ACTGGG | 1 cut(s) | 351 |
| BpiI | GAAGAC | 4 cut(s) | 168, 839, 1084, 2826 |
| BpmI | CTGGAG | 2 cut(s) | 1267, 1944 |
| Bpu14I | TTCGAA | 2 cut(s) | 1633, 2105 |
| BpuEI | CTTGAG | 4 cut(s) | 253, 1232, 1431, 2908 |
| Bsa29I | ATCGAT | 1 cut(s) | 608 |
| BsaAI | YACGTR | 3 cut(s) | 994, 2138, 2500 |
| BsaBI | GATNNNNATC | 2 cut(s) | 554, 2865 |
| BsaHI | GRCGYC | 1 cut(s) | 2157 |
| BsaI | GGTCTC | 5 cut(s) | 947, 2035, 2133, 2177, 2950 |
| BsaJI | CCNNGG | 2 cut(s) | 2015, 2217 |
| BsaWI | WCCGGW | 3 cut(s) | 1336, 1439, 2794 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 422, 679, 920, 1439, 2344, 2591, 2794, 2801 |
| Bse118I | RCCGGY | 1 cut(s) | 1439 |
| Bse1I | ACTGG | 9 cut(s) | 265, 346, 1069, 1284, 1524, 2003, 2511, 2704, 3044 |
| Bse3DI | GCAATG | 3 cut(s) | 1471, 2447, 2667 |
| Bse8I | GATNNNNATC | 2 cut(s) | 554, 2865 |
| BseCI | ATCGAT | 1 cut(s) | 608 |
| BseDI | CCNNGG | 2 cut(s) | 2015, 2217 |
| BseGI | GGATG | 7 cut(s) | 244, 405, 516, 1323, 2258, 2780, 3018 |
| BseJI | GATNNNNATC | 2 cut(s) | 554, 2865 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 422, 679, 920, 1439, 2344, 2591, 2794, 2801 |
| BseMI | GCAATG | 3 cut(s) | 1471, 2447, 2667 |
| BseMII | CTCAG | 4 cut(s) | 360, 1724, 2762, 2983 |
| BseNI | ACTGG | 9 cut(s) | 265, 346, 1069, 1284, 1524, 2003, 2511, 2704, 3044 |
| BseRI | GAGGAG | 1 cut(s) | 587 |
| BseSI | GKGCMC | 1 cut(s) | 3096 |
| BseXI | GCAGC | 4 cut(s) | 442, 1592, 2424, 2621 |
| BsgI | GTGCAG | 1 cut(s) | 778 |
| Bsh1236I | CGCG | 1 cut(s) | 2520 |
| BshFI | GGCC | 8 cut(s) | 109, 283, 1154, 1253, 1797, 2504, 2649, 3060 |
| BshNI | GGYRCC | 1 cut(s) | 2581 |
| BshTI | ACCGGT | 1 cut(s) | 1439 |
| BshVI | ATCGAT | 1 cut(s) | 608 |
| BsiHKAI | GWGCWC | 3 cut(s) | 411, 1447, 3096 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2929 |
| BsiSI | CCGG | 4 cut(s) | 1337, 1440, 2795, 3061 |
| BslFI | GGGAC | 4 cut(s) | 587, 803, 914, 2846 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 422, 679, 920, 1439, 2344, 2591, 2794, 2801 |
| BsmAI | GTCTC | 8 cut(s) | 132, 947, 1223, 1560, 2035, 2133, 2177, 2950 |
| BsmBI | CGTCTC | 1 cut(s) | 1223 |
| BsmFI | GGGAC | 4 cut(s) | 587, 803, 914, 2846 |
| BsmI | GAATGC | 1 cut(s) | 967 |
| BsnI | GGCC | 8 cut(s) | 109, 283, 1154, 1253, 1797, 2504, 2649, 3060 |
| Bso31I | GGTCTC | 5 cut(s) | 947, 2035, 2133, 2177, 2950 |
| BsoBI | CYCGRG | 1 cut(s) | 2929 |
| Bsp119I | TTCGAA | 2 cut(s) | 1633, 2105 |
| Bsp1286I | GDGCHC | 3 cut(s) | 411, 1447, 3096 |
| Bsp19I | CCATGG | 1 cut(s) | 2217 |
| BspACI | CCGC | 3 cut(s) | 507, 1578, 2376 |
| BspANI | GGCC | 8 cut(s) | 109, 283, 1154, 1253, 1797, 2504, 2649, 3060 |
| BspCNI | CTCAG | 4 cut(s) | 361, 1723, 2761, 2982 |
| BspDI | ATCGAT | 1 cut(s) | 608 |
| BspFNI | CGCG | 1 cut(s) | 2520 |
| BspLI | GGNNCC | 5 cut(s) | 2021, 2583, 2596, 2834, 2835 |
| BspMAI | CTGCAG | 1 cut(s) | 812 |
| BspMI | ACCTGC | 1 cut(s) | 3108 |
| BspPI | GGATC | 5 cut(s) | 92, 343, 1128, 2210, 2386 |
| BspT104I | TTCGAA | 2 cut(s) | 1633, 2105 |
| BspT107I | GGYRCC | 1 cut(s) | 2581 |
| BspTNI | GGTCTC | 5 cut(s) | 947, 2035, 2133, 2177, 2950 |
| BsrDI | GCAATG | 3 cut(s) | 1471, 2447, 2667 |
| BsrFI | RCCGGY | 1 cut(s) | 1439 |
| BsrI | ACTGG | 9 cut(s) | 265, 346, 1069, 1284, 1524, 2003, 2511, 2704, 3044 |
| BssAI | RCCGGY | 1 cut(s) | 1439 |
| BssECI | CCNNGG | 2 cut(s) | 2015, 2217 |
| BssNAI | GTATAC | 1 cut(s) | 327 |
| BssNI | GRCGYC | 1 cut(s) | 2157 |
| BssSI | CACGAG | 1 cut(s) | 3007 |
| BssT1I | CCWWGG | 2 cut(s) | 2015, 2217 |
| Bst1107I | GTATAC | 1 cut(s) | 327 |
| Bst2BI | CACGAG | 1 cut(s) | 3007 |
| Bst4CI | ACNGT | 3 cut(s) | 1129, 1768, 2917 |
| Bst6I | CTCTTC | 6 cut(s) | 145, 834, 1155, 1974, 2929, 3043 |
| BstACI | GRCGYC | 1 cut(s) | 2157 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2890 |
| BstBAI | YACGTR | 3 cut(s) | 994, 2138, 2500 |
| BstBI | TTCGAA | 2 cut(s) | 1633, 2105 |
| BstC8I | GCNNGC | 6 cut(s) | 1049, 1239, 2339, 2469, 2895, 3024 |
| BstDEI | CTNAG | 9 cut(s) | 369, 497, 511, 1217, 1710, 2278, 2638, 2748, 2969 |
| BstDSI | CCRYGG | 1 cut(s) | 2217 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 918 |
| BstF5I | GGATG | 7 cut(s) | 244, 405, 516, 1323, 2258, 2780, 3018 |
| BstFNI | CGCG | 1 cut(s) | 2520 |
| BstHHI | GCGC | 1 cut(s) | 1585 |
| BstMAI | GTCTC | 8 cut(s) | 132, 947, 1223, 1560, 2035, 2133, 2177, 2950 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2468, 2890 |
| BstNSI | RCATGY | 5 cut(s) | 753, 967, 2322, 2731, 2738 |
| BstSFI | CTRYAG | 3 cut(s) | 808, 2410, 2764 |
| BstSLI | GKGCMC | 1 cut(s) | 3096 |
| BstUI | CGCG | 1 cut(s) | 2520 |
| BstV1I | GCAGC | 4 cut(s) | 442, 1592, 2424, 2621 |
| BstV2I | GAAGAC | 4 cut(s) | 168, 839, 1084, 2826 |
| BstX2I | RGATCY | 2 cut(s) | 97, 335 |
| BstYI | RGATCY | 2 cut(s) | 97, 335 |
| BstZ17I | GTATAC | 1 cut(s) | 327 |
| Bsu15I | ATCGAT | 1 cut(s) | 608 |
| BsuI | GTATCC | 1 cut(s) | 2344 |
| BsuRI | GGCC | 8 cut(s) | 109, 283, 1154, 1253, 1797, 2504, 2649, 3060 |
| BsuTUI | ATCGAT | 1 cut(s) | 608 |
| BtgI | CCRYGG | 1 cut(s) | 2217 |
| BtsCI | GGATG | 7 cut(s) | 244, 405, 516, 1323, 2258, 2780, 3018 |
| BtsI | GCAGTG | 3 cut(s) | 817, 1823, 3094 |
| BtsIMutI | CAGTG | 7 cut(s) | 58, 817, 1291, 1823, 2518, 3051, 3094 |
| BveI | ACCTGC | 1 cut(s) | 3108 |
| Cac8I | GCNNGC | 6 cut(s) | 1049, 1239, 2339, 2469, 2895, 3024 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2849 |
| CfoI | GCGC | 1 cut(s) | 1585 |
| Cfr10I | RCCGGY | 1 cut(s) | 1439 |
| Cfr13I | GGNCC | 5 cut(s) | 1153, 1796, 2705, 2720, 2833 |
| ClaI | ATCGAT | 1 cut(s) | 608 |
| CseI | GACGC | 1 cut(s) | 2165 |
| Csp6I | GTAC | 6 cut(s) | 366, 774, 890, 961, 1262, 1952 |
| CspAI | ACCGGT | 1 cut(s) | 1439 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 29 |
| CviQI | GTAC | 6 cut(s) | 366, 774, 890, 961, 1262, 1952 |
| DdeI | CTNAG | 9 cut(s) | 369, 497, 511, 1217, 1710, 2278, 2638, 2748, 2969 |
| DraI | TTTAAA | 1 cut(s) | 384 |
| EaeI | YGGCCR | 3 cut(s) | 107, 2647, 3058 |
| Eam1104I | CTCTTC | 6 cut(s) | 145, 834, 1155, 1974, 2929, 3043 |
| EarI | CTCTTC | 6 cut(s) | 145, 834, 1155, 1974, 2929, 3043 |
| Ecl136II | GAGCTC | 1 cut(s) | 409 |
| Eco130I | CCWWGG | 2 cut(s) | 2015, 2217 |
| Eco147I | AGGCCT | 1 cut(s) | 1253 |
| Eco24I | GRGCYC | 1 cut(s) | 411 |
| Eco31I | GGTCTC | 5 cut(s) | 947, 2035, 2133, 2177, 2950 |
| Eco32I | GATATC | 1 cut(s) | 552 |
| Eco47I | GGWCC | 3 cut(s) | 2705, 2720, 2833 |
| Eco53kI | GAGCTC | 1 cut(s) | 409 |
| Eco57I | CTGAAG | 5 cut(s) | 315, 435, 695, 1005, 1221 |
| Eco88I | CYCGRG | 1 cut(s) | 2929 |
| EcoICRI | GAGCTC | 1 cut(s) | 409 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 918 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2833 |
| EcoRV | GATATC | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 2 cut(s) | 2015, 2217 |
| EcoT22I | ATGCAT | 3 cut(s) | 969, 1516, 2606 |
| EcoT38I | GRGCYC | 1 cut(s) | 411 |
| ErhI | CCWWGG | 2 cut(s) | 2015, 2217 |
| Esp3I | CGTCTC | 1 cut(s) | 1223 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 876, 908 |
| FaqI | GGGAC | 4 cut(s) | 587, 803, 914, 2846 |
| FauNDI | CATATG | 1 cut(s) | 2058 |
| FbaI | TGATCA | 2 cut(s) | 466, 612 |
| FblI | GTMKAC | 2 cut(s) | 326, 589 |
| Fnu4HI | GCNGC | 5 cut(s) | 431, 1578, 1581, 2438, 2635 |
| FokI | GGATG | 7 cut(s) | 251, 412, 503, 1330, 2265, 2787, 3025 |
| FriOI | GRGCYC | 1 cut(s) | 411 |
| Fsp4HI | GCNGC | 5 cut(s) | 431, 1578, 1581, 2438, 2635 |
| FspBI | CTAG | 9 cut(s) | 596, 1089, 1178, 1415, 1644, 1718, 2087, 2192, 2789 |
| GlaI | GCGC | 1 cut(s) | 1584 |
| GluI | GCNGC | 5 cut(s) | 431, 1578, 1581, 2438, 2635 |
| GsuI | CTGGAG | 2 cut(s) | 1267, 1944 |
| HaeIII | GGCC | 8 cut(s) | 109, 283, 1154, 1253, 1797, 2504, 2649, 3060 |
| HapII | CCGG | 4 cut(s) | 1337, 1440, 2795, 3061 |
| HgaI | GACGC | 1 cut(s) | 2165 |
| HhaI | GCGC | 1 cut(s) | 1585 |
| Hin1I | GRCGYC | 1 cut(s) | 2157 |
| Hin6I | GCGC | 1 cut(s) | 1583 |
| HinP1I | GCGC | 1 cut(s) | 1583 |
| HindIII | AAGCTT | 4 cut(s) | 81, 271, 659, 2296 |
| HpaII | CCGG | 4 cut(s) | 1337, 1440, 2795, 3061 |
| HphI | GGTGA | 7 cut(s) | 1079, 1106, 1351, 2240, 2336, 2923, 3033 |
| Hpy166II | GTNNAC | 7 cut(s) | 327, 590, 647, 1481, 2492, 2705, 3094 |
| Hpy188I | TCNGA | 9 cut(s) | 617, 759, 985, 1310, 1537, 1666, 1713, 1740, 2902 |
| Hpy8I | GTNNAC | 7 cut(s) | 327, 590, 647, 1481, 2492, 2705, 3094 |
| HpyCH4III | ACNGT | 3 cut(s) | 1129, 1768, 2917 |
| HpyCH4IV | ACGT | 4 cut(s) | 993, 2137, 2499, 2625 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2468, 2890 |
| HpyF3I | CTNAG | 9 cut(s) | 369, 497, 511, 1217, 1710, 2278, 2638, 2748, 2969 |
| HpySE526I | ACGT | 4 cut(s) | 993, 2137, 2499, 2625 |
| Hsp92I | GRCGYC | 1 cut(s) | 2157 |
| HspAI | GCGC | 1 cut(s) | 1583 |
| KflI | GGGWCCC | 1 cut(s) | 2833 |
| Ksp22I | TGATCA | 2 cut(s) | 466, 612 |
| LmnI | GCTCC | 2 cut(s) | 1234, 2451 |
| Lsp1109I | GCAGC | 4 cut(s) | 442, 1592, 2424, 2621 |
| LweI | GCATC | 8 cut(s) | 390, 1446, 1501, 1594, 2065, 2243, 2855, 2906 |
| MaeI | CTAG | 9 cut(s) | 596, 1089, 1178, 1415, 1644, 1718, 2087, 2192, 2789 |
| MaeII | ACGT | 4 cut(s) | 993, 2137, 2499, 2625 |
| MaeIII | GTNAC | 4 cut(s) | 1786, 2730, 2911, 3080 |
| MfeI | CAATTG | 2 cut(s) | 877, 2472 |
| MflI | RGATCY | 2 cut(s) | 97, 335 |
| MhlI | GDGCHC | 3 cut(s) | 411, 1447, 3096 |
| MlsI | TGGCCA | 2 cut(s) | 109, 2649 |
| MluNI | TGGCCA | 2 cut(s) | 109, 2649 |
| MmeI | TCCRAC | 3 cut(s) | 403, 1986, 2285 |
| Mox20I | TGGCCA | 2 cut(s) | 109, 2649 |
| Mph1103I | ATGCAT | 3 cut(s) | 969, 1516, 2606 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MscI | TGGCCA | 2 cut(s) | 109, 2649 |
| MseI | TTAA | 6 cut(s) | 383, 689, 1028, 1131, 1494, 1682 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1782, 3011 |
| Msp20I | TGGCCA | 2 cut(s) | 109, 2649 |
| MspI | CCGG | 4 cut(s) | 1337, 1440, 2795, 3061 |
| MunI | CAATTG | 2 cut(s) | 877, 2472 |
| Mva1269I | GAATGC | 1 cut(s) | 967 |
| MvnI | CGCG | 1 cut(s) | 2520 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2468, 2890 |
| NcoI | CCATGG | 1 cut(s) | 2217 |
| NdeI | CATATG | 1 cut(s) | 2058 |
| NlaIV | GGNNCC | 5 cut(s) | 2021, 2583, 2596, 2834, 2835 |
| NmuCI | GTSAC | 3 cut(s) | 2730, 2911, 3080 |
| NsiI | ATGCAT | 3 cut(s) | 969, 1516, 2606 |
| NspI | RCATGY | 5 cut(s) | 753, 967, 2322, 2731, 2738 |
| NspV | TTCGAA | 2 cut(s) | 1633, 2105 |
| PceI | AGGCCT | 1 cut(s) | 1253 |
| PciI | ACATGT | 2 cut(s) | 749, 2734 |
| PctI | GAATGC | 1 cut(s) | 967 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2344 |
| PinAI | ACCGGT | 1 cut(s) | 1439 |
| PkrI | GCNGC | 5 cut(s) | 432, 1579, 1582, 2439, 2636 |
| Ppu21I | YACGTR | 3 cut(s) | 994, 2138, 2500 |
| PpuMI | RGGWCCY | 1 cut(s) | 2833 |
| PscI | ACATGT | 2 cut(s) | 749, 2734 |
| PsiI | TTATAA | 1 cut(s) | 2433 |
| Psp124BI | GAGCTC | 1 cut(s) | 411 |
| Psp1406I | AACGTT | 1 cut(s) | 2625 |
| Psp5II | RGGWCCY | 1 cut(s) | 2833 |
| PspN4I | GGNNCC | 5 cut(s) | 2021, 2583, 2596, 2834, 2835 |
| PspPI | GGNCC | 5 cut(s) | 1153, 1796, 2705, 2720, 2833 |
| PspPPI | RGGWCCY | 1 cut(s) | 2833 |
| PstI | CTGCAG | 1 cut(s) | 812 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2849 |
| PsuI | RGATCY | 2 cut(s) | 97, 335 |
| RsaI | GTAC | 6 cut(s) | 367, 775, 891, 962, 1263, 1953 |
| RsaNI | GTAC | 6 cut(s) | 366, 774, 890, 961, 1262, 1952 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1782, 3011 |
| SacI | GAGCTC | 1 cut(s) | 411 |
| SaqAI | TTAA | 6 cut(s) | 383, 689, 1028, 1131, 1494, 1682 |
| SatI | GCNGC | 5 cut(s) | 431, 1578, 1581, 2438, 2635 |
| Sau96I | GGNCC | 5 cut(s) | 1153, 1796, 2705, 2720, 2833 |
| ScaI | AGTACT | 1 cut(s) | 1263 |
| SduI | GDGCHC | 3 cut(s) | 411, 1447, 3096 |
| SfaNI | GCATC | 8 cut(s) | 390, 1446, 1501, 1594, 2065, 2243, 2855, 2906 |
| SfcI | CTRYAG | 3 cut(s) | 808, 2410, 2764 |
| SfuI | TTCGAA | 2 cut(s) | 1633, 2105 |
| SinI | GGWCC | 3 cut(s) | 2705, 2720, 2833 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1782, 3011 |
| SmlI | CTYRAG | 5 cut(s) | 268, 1247, 1446, 2923, 3107 |
| SmoI | CTYRAG | 5 cut(s) | 268, 1247, 1446, 2923, 3107 |
| SseBI | AGGCCT | 1 cut(s) | 1253 |
| SsiI | CCGC | 3 cut(s) | 507, 1578, 2376 |
| SspI | AATATT | 4 cut(s) | 148, 1492, 2712, 2827 |
| SspMI | CTAG | 9 cut(s) | 596, 1089, 1178, 1415, 1644, 1718, 2087, 2192, 2789 |
| SstI | GAGCTC | 1 cut(s) | 411 |
| StuI | AGGCCT | 1 cut(s) | 1253 |
| StyI | CCWWGG | 2 cut(s) | 2015, 2217 |
| TaaI | ACNGT | 3 cut(s) | 1129, 1768, 2917 |
| TaiI | ACGT | 4 cut(s) | 996, 2140, 2502, 2628 |
| TaqI | TCGA | 6 cut(s) | 608, 974, 1123, 1633, 2105, 2205 |
| TaqII | GACCGA | 1 cut(s) | 851 |
| TatI | WGTACW | 3 cut(s) | 773, 889, 1261 |
| TauI | GCSGC | 1 cut(s) | 1580 |
| Tru1I | TTAA | 6 cut(s) | 383, 689, 1028, 1131, 1494, 1682 |
| Tru9I | TTAA | 6 cut(s) | 383, 689, 1028, 1131, 1494, 1682 |
| TscAI | CASTG | 7 cut(s) | 58, 817, 1291, 1823, 2518, 3051, 3101 |
| TseFI | GTSAC | 3 cut(s) | 2730, 2911, 3080 |
| TseI | GCWGC | 4 cut(s) | 430, 1580, 2437, 2634 |
| Tsp45I | GTSAC | 3 cut(s) | 2730, 2911, 3080 |
| TspDTI | ATGAA | 8 cut(s) | 1422, 1766, 1898, 1992, 2045, 2110, 2901, 2930 |
| TspGWI | ACGGA | 2 cut(s) | 1247, 2658 |
| TspRI | CASTG | 7 cut(s) | 58, 817, 1291, 1823, 2518, 3051, 3101 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2344 |
| VneI | GTGCAC | 1 cut(s) | 3092 |
| VpaK11BI | GGWCC | 3 cut(s) | 2705, 2720, 2833 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 918 |
| XapI | RAATTY | 4 cut(s) | 308, 927, 2141, 2309 |
| XbaI | TCTAGA | 2 cut(s) | 1177, 2191 |
| XceI | RCATGY | 5 cut(s) | 753, 967, 2322, 2731, 2738 |
| XmiI | GTMKAC | 2 cut(s) | 326, 589 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| XspI | CTAG | 9 cut(s) | 596, 1089, 1178, 1415, 1644, 1718, 2087, 2192, 2789 |
| ZrmI | AGTACT | 1 cut(s) | 1263 |
| Zsp2I | ATGCAT | 3 cut(s) | 969, 1516, 2606 |