acyl-activating enzyme
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AMP-binding | PF00501 | 13 - 399 | 1.8e-54 | AMP-binding enzyme |
| AMP-binding_C | PF13193 | 466 - 543 | 3.1e-09 | AMP-binding enzyme C-terminal domain |
| PQQ_2 | PF13360 | 759 - 868 | 6e-08 | Outer membrane protein assembly factor BamB |
| Beta-prop_ACSF4 | PF13570 | 766 - 1116 | 6.1e-101 | Beta-alanine-activating enzyme, beta-propeller |
| PQQ_2 | PF13360 | 908 - 1115 | 1.5e-09 | Outer membrane protein assembly factor BamB |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1493, 1595, 2649 |
| AarI | CACCTGC | 2 cut(s) | 410, 2166 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1278, 4361 |
| Acc16I | TGCGCA | 1 cut(s) | 3448 |
| Acc36I | ACCTGC | 4 cut(s) | 410, 2166, 3838, 4232 |
| AccB1I | GGYRCC | 2 cut(s) | 3821, 4135 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 656, 2126, 2415, 2684, 2828 |
| AccBSI | CCGCTC | 1 cut(s) | 147 |
| AccI | GTMKAC | 2 cut(s) | 387, 1096 |
| AccIII | TCCGGA | 1 cut(s) | 3170 |
| AclWI | GGATC | 7 cut(s) | 2295, 2308, 2371, 2920, 3065, 3078, 3886 |
| AcoI | YGGCCR | 4 cut(s) | 344, 378, 1582, 2338 |
| AcsI | RAATTY | 9 cut(s) | 246, 463, 713, 907, 1158, 1801, 3229, 3245, 3306 |
| AcuI | CTGAAG | 4 cut(s) | 1779, 2088, 3768, 3944 |
| AcyI | GRCGYC | 2 cut(s) | 410, 432 |
| AflII | CTTAAG | 1 cut(s) | 3530 |
| AflIII | ACRYGT | 4 cut(s) | 1974, 2162, 2437, 3626 |
| AgeI | ACCGGT | 1 cut(s) | 1298 |
| AhlI | ACTAGT | 1 cut(s) | 2114 |
| AjiI | CACGTC | 1 cut(s) | 2438 |
| AjnI | CCWGG | 7 cut(s) | 341, 1513, 1579, 2340, 2514, 3265, 3357 |
| AleI | CACNNNNGTG | 1 cut(s) | 1010 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3165, 3197 |
| Alw21I | GWGCWC | 4 cut(s) | 297, 1007, 3105, 3339 |
| Alw26I | GTCTC | 9 cut(s) | 292, 498, 873, 1058, 1064, 1178, 2706, 2838, 3403 |
| Alw44I | GTGCAC | 1 cut(s) | 3335 |
| AlwI | GGATC | 7 cut(s) | 2295, 2308, 2371, 2920, 3065, 3078, 3886 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 358, 1247 |
| Aor13HI | TCCGGA | 1 cut(s) | 3170 |
| AoxI | GGCC | 7 cut(s) | 344, 378, 1582, 1731, 2338, 2752, 2942 |
| ApaLI | GTGCAC | 1 cut(s) | 3335 |
| ApoI | RAATTY | 9 cut(s) | 246, 463, 713, 907, 1158, 1801, 3229, 3245, 3306 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 57, 89, 970, 1002 |
| AseI | ATTAAT | 1 cut(s) | 4155 |
| AsiGI | ACCGGT | 1 cut(s) | 1298 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 782, 1605, 2404 |
| AspLEI | GCGC | 2 cut(s) | 2641, 3449 |
| AspS9I | GGNCC | 5 cut(s) | 334, 978, 1354, 2942, 4244 |
| AvaII | GGWCC | 4 cut(s) | 334, 978, 1354, 4244 |
| BaeGI | GKGCMC | 1 cut(s) | 3339 |
| BalI | TGGCCA | 3 cut(s) | 346, 1584, 2340 |
| BamHI | GGATCC | 2 cut(s) | 2300, 3070 |
| BanI | GGYRCC | 2 cut(s) | 3821, 4135 |
| BanII | GRGCYC | 2 cut(s) | 572, 3807 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3358, 3390 |
| BbsI | GAAGAC | 2 cut(s) | 1516, 3756 |
| Bbv12I | GWGCWC | 4 cut(s) | 297, 1007, 3105, 3339 |
| BceAI | ACGGC | 6 cut(s) | 81, 154, 161, 253, 397, 2793 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 185, 219, 3292, 3326 |
| BciT130I | CCWGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| BciVI | GTATCC | 3 cut(s) | 657, 1184, 2142 |
| BclI | TGATCA | 4 cut(s) | 700, 3121, 4297, 4402 |
| BcoDI | GTCTC | 9 cut(s) | 292, 498, 873, 1058, 1064, 1178, 2706, 2838, 3403 |
| BcuI | ACTAGT | 1 cut(s) | 2114 |
| BfmI | CTRYAG | 3 cut(s) | 803, 1101, 3768 |
| BfrI | CTTAAG | 1 cut(s) | 3530 |
| BfuAI | ACCTGC | 4 cut(s) | 410, 2166, 3838, 4232 |
| BfuI | GTATCC | 3 cut(s) | 657, 1184, 2142 |
| BglII | AGATCT | 1 cut(s) | 1529 |
| BlpI | GCTNAGC | 1 cut(s) | 920 |
| BmcAI | AGTACT | 2 cut(s) | 2113, 3493 |
| Bme1390I | CCNGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| Bme18I | GGWCC | 4 cut(s) | 334, 978, 1354, 4244 |
| BmgBI | CACGTC | 1 cut(s) | 2438 |
| BmgT120I | GGNCC | 5 cut(s) | 334, 978, 1354, 2942, 4244 |
| BmiI | GGNNCC | 8 cut(s) | 336, 2302, 2407, 2959, 3072, 3823, 3925, 4137 |
| BmrFI | CCNGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| BmsI | GCATC | 7 cut(s) | 299, 624, 1426, 2324, 2480, 3193, 3730 |
| BoxI | GACNNNNGTC | 1 cut(s) | 96 |
| BpiI | GAAGAC | 2 cut(s) | 1516, 3756 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 155, 187, 3033, 3065 |
| BpmI | CTGGAG | 5 cut(s) | 22, 1224, 2769, 2976, 3366 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3107 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 920 |
| BpuEI | CTTGAG | 1 cut(s) | 428 |
| BsaAI | YACGTR | 1 cut(s) | 156 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2130 |
| BsaHI | GRCGYC | 2 cut(s) | 410, 432 |
| BsaI | GGTCTC | 3 cut(s) | 1178, 2706, 2838 |
| BsaJI | CCNNGG | 6 cut(s) | 480, 974, 2135, 3265, 3357, 3358 |
| BsaWI | WCCGGW | 4 cut(s) | 86, 1298, 3170, 3998 |
| Bse118I | RCCGGY | 2 cut(s) | 1298, 2578 |
| Bse1I | ACTGG | 6 cut(s) | 739, 1572, 2413, 2752, 2822, 3556 |
| Bse3DI | GCAATG | 5 cut(s) | 1186, 1578, 2656, 3342, 3901 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2130 |
| BseAI | TCCGGA | 1 cut(s) | 3170 |
| BseBI | CCWGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| BseDI | CCNNGG | 6 cut(s) | 480, 974, 2135, 3265, 3357, 3358 |
| BseGI | GGATG | 9 cut(s) | 639, 1420, 1554, 2409, 2495, 2887, 3208, 3331, 4357 |
| BseJI | GATNNNNATC | 1 cut(s) | 2130 |
| BseMI | GCAATG | 5 cut(s) | 1186, 1578, 2656, 3342, 3901 |
| BseMII | CTCAG | 6 cut(s) | 2489, 3098, 3512, 3684, 3792, 4275 |
| BseNI | ACTGG | 6 cut(s) | 739, 1572, 2413, 2752, 2822, 3556 |
| BseRI | GAGGAG | 4 cut(s) | 528, 677, 3369, 4249 |
| BseSI | GKGCMC | 1 cut(s) | 3339 |
| BseYI | CCCAGC | 3 cut(s) | 2939, 3431, 3662 |
| BsgI | GTGCAG | 2 cut(s) | 388, 1800 |
| Bsh1285I | CGRYCG | 2 cut(s) | 145, 3142 |
| BshFI | GGCC | 7 cut(s) | 346, 380, 1584, 1733, 2340, 2754, 2944 |
| BshNI | GGYRCC | 2 cut(s) | 3821, 4135 |
| BshTI | ACCGGT | 1 cut(s) | 1298 |
| BsiEI | CGRYCG | 2 cut(s) | 145, 3142 |
| BsiHKAI | GWGCWC | 4 cut(s) | 297, 1007, 3105, 3339 |
| BsiSI | CCGG | 6 cut(s) | 87, 1299, 2579, 3171, 3428, 3999 |
| BsiWI | CGTACG | 1 cut(s) | 156 |
| BslFI | GGGAC | 4 cut(s) | 34, 2234, 4096, 4209 |
| BsmAI | GTCTC | 9 cut(s) | 292, 498, 873, 1058, 1064, 1178, 2706, 2838, 3403 |
| BsmBI | CGTCTC | 1 cut(s) | 1064 |
| BsmFI | GGGAC | 4 cut(s) | 34, 2234, 4096, 4209 |
| BsmI | GAATGC | 3 cut(s) | 2780, 3555, 4342 |
| BsnI | GGCC | 7 cut(s) | 346, 380, 1584, 1733, 2340, 2754, 2944 |
| Bso31I | GGTCTC | 3 cut(s) | 1178, 2706, 2838 |
| Bsp1286I | GDGCHC | 6 cut(s) | 297, 572, 1007, 3105, 3339, 3807 |
| Bsp13I | TCCGGA | 1 cut(s) | 3170 |
| Bsp1407I | TGTACA | 2 cut(s) | 558, 1025 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 920 |
| Bsp19I | CCATGG | 2 cut(s) | 480, 2135 |
| BspANI | GGCC | 7 cut(s) | 346, 380, 1584, 1733, 2340, 2754, 2944 |
| BspCNI | CTCAG | 6 cut(s) | 2488, 3099, 3511, 3685, 3793, 4276 |
| BspEI | TCCGGA | 1 cut(s) | 3170 |
| BspHI | TCATGA | 1 cut(s) | 4266 |
| BspLI | GGNNCC | 8 cut(s) | 336, 2302, 2407, 2959, 3072, 3823, 3925, 4137 |
| BspMI | ACCTGC | 4 cut(s) | 410, 2166, 3838, 4232 |
| BspPI | GGATC | 7 cut(s) | 2295, 2308, 2371, 2920, 3065, 3078, 3886 |
| BspQI | GCTCTTC | 2 cut(s) | 1899, 2982 |
| BspT107I | GGYRCC | 2 cut(s) | 3821, 4135 |
| BspTI | CTTAAG | 1 cut(s) | 3530 |
| BspTNI | GGTCTC | 3 cut(s) | 1178, 2706, 2838 |
| BsrBI | CCGCTC | 1 cut(s) | 147 |
| BsrDI | GCAATG | 5 cut(s) | 1186, 1578, 2656, 3342, 3901 |
| BsrFI | RCCGGY | 2 cut(s) | 1298, 2578 |
| BsrGI | TGTACA | 2 cut(s) | 558, 1025 |
| BsrI | ACTGG | 6 cut(s) | 739, 1572, 2413, 2752, 2822, 3556 |
| BssAI | RCCGGY | 2 cut(s) | 1298, 2578 |
| BssECI | CCNNGG | 6 cut(s) | 480, 974, 2135, 3265, 3357, 3358 |
| BssNAI | GTATAC | 1 cut(s) | 1097 |
| BssNI | GRCGYC | 2 cut(s) | 410, 432 |
| BssT1I | CCWWGG | 3 cut(s) | 480, 974, 2135 |
| Bst1107I | GTATAC | 1 cut(s) | 1097 |
| Bst2UI | CCWGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| Bst4CI | ACNGT | 9 cut(s) | 121, 1228, 2022, 2591, 2627, 4087, 4223, 4321, 4387 |
| Bst6I | CTCTTC | 4 cut(s) | 1755, 1899, 2982, 3286 |
| BstACI | GRCGYC | 2 cut(s) | 410, 432 |
| BstAFI | CTTAAG | 1 cut(s) | 3530 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1823 |
| BstAUI | TGTACA | 2 cut(s) | 558, 1025 |
| BstBAI | YACGTR | 1 cut(s) | 156 |
| BstC8I | GCNNGC | 1 cut(s) | 2962 |
| BstDSI | CCRYGG | 2 cut(s) | 480, 2135 |
| BstEII | GGTNACC | 1 cut(s) | 89 |
| BstF5I | GGATG | 9 cut(s) | 639, 1420, 1554, 2409, 2495, 2887, 3208, 3331, 4357 |
| BstHHI | GCGC | 2 cut(s) | 2641, 3449 |
| BstMAI | GTCTC | 9 cut(s) | 292, 498, 873, 1058, 1064, 1178, 2706, 2838, 3403 |
| BstMCI | CGRYCG | 2 cut(s) | 145, 3142 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1375, 1646, 1823, 3174, 3863 |
| BstNI | CCWGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| BstNSI | RCATGY | 4 cut(s) | 1978, 2166, 3630, 3943 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 96 |
| BstPI | GGTNACC | 1 cut(s) | 89 |
| BstSCI | CCNGG | 7 cut(s) | 341, 1513, 1579, 2340, 2514, 3265, 3357 |
| BstSFI | CTRYAG | 3 cut(s) | 803, 1101, 3768 |
| BstSLI | GKGCMC | 1 cut(s) | 3339 |
| BstV2I | GAAGAC | 2 cut(s) | 1516, 3756 |
| BstX2I | RGATCY | 5 cut(s) | 1529, 2300, 2912, 3070, 3878 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2558, 3713 |
| BstYI | RGATCY | 5 cut(s) | 1529, 2300, 2912, 3070, 3878 |
| BstZ17I | GTATAC | 1 cut(s) | 1097 |
| BsuI | GTATCC | 3 cut(s) | 657, 1184, 2142 |
| BsuRI | GGCC | 7 cut(s) | 346, 380, 1584, 1733, 2340, 2754, 2944 |
| BtgI | CCRYGG | 2 cut(s) | 480, 2135 |
| BtrI | CACGTC | 1 cut(s) | 2438 |
| BtsCI | GGATG | 9 cut(s) | 639, 1420, 1554, 2409, 2495, 2887, 3208, 3331, 4357 |
| BtsI | GCAGTG | 1 cut(s) | 3337 |
| BtsIMutI | CAGTG | 9 cut(s) | 600, 842, 902, 1224, 1565, 2420, 3337, 4383, 4405 |
| BveI | ACCTGC | 4 cut(s) | 410, 2166, 3838, 4232 |
| Cac8I | GCNNGC | 1 cut(s) | 2962 |
| CaiI | CAGNNNCTG | 2 cut(s) | 358, 1247 |
| CciI | TCATGA | 1 cut(s) | 4266 |
| CfoI | GCGC | 2 cut(s) | 2641, 3449 |
| Cfr10I | RCCGGY | 2 cut(s) | 1298, 2578 |
| Cfr13I | GGNCC | 5 cut(s) | 334, 978, 1354, 2942, 4244 |
| CseI | GACGC | 5 cut(s) | 36, 418, 440, 1081, 2321 |
| CsiI | ACCWGGT | 1 cut(s) | 1513 |
| CspAI | ACCGGT | 1 cut(s) | 1298 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1278, 4361 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1278, 4361 |
| EaeI | YGGCCR | 4 cut(s) | 344, 378, 1582, 2338 |
| Eam1104I | CTCTTC | 4 cut(s) | 1755, 1899, 2982, 3286 |
| EarI | CTCTTC | 4 cut(s) | 1755, 1899, 2982, 3286 |
| EciI | GGCGGA | 2 cut(s) | 163, 501 |
| Eco130I | CCWWGG | 3 cut(s) | 480, 974, 2135 |
| Eco147I | AGGCCT | 1 cut(s) | 1733 |
| Eco24I | GRGCYC | 2 cut(s) | 572, 3807 |
| Eco31I | GGTCTC | 3 cut(s) | 1178, 2706, 2838 |
| Eco32I | GATATC | 1 cut(s) | 2347 |
| Eco47I | GGWCC | 4 cut(s) | 334, 978, 1354, 4244 |
| Eco57I | CTGAAG | 4 cut(s) | 1779, 2088, 3768, 3944 |
| Eco91I | GGTNACC | 1 cut(s) | 89 |
| EcoO109I | RGGNCCY | 1 cut(s) | 978 |
| EcoO65I | GGTNACC | 1 cut(s) | 89 |
| EcoRI | GAATTC | 1 cut(s) | 246 |
| EcoRII | CCWGG | 7 cut(s) | 341, 1513, 1579, 2340, 2514, 3265, 3357 |
| EcoRV | GATATC | 1 cut(s) | 2347 |
| EcoT14I | CCWWGG | 3 cut(s) | 480, 974, 2135 |
| EcoT22I | ATGCAT | 1 cut(s) | 2159 |
| EcoT38I | GRGCYC | 2 cut(s) | 572, 3807 |
| ErhI | CCWWGG | 3 cut(s) | 480, 974, 2135 |
| Esp3I | CGTCTC | 1 cut(s) | 1064 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 702, 734, 1671, 1703 |
| FaqI | GGGAC | 4 cut(s) | 34, 2234, 4096, 4209 |
| FauI | CCCGC | 1 cut(s) | 113 |
| FauNDI | CATATG | 2 cut(s) | 2537, 2620 |
| FbaI | TGATCA | 4 cut(s) | 700, 3121, 4297, 4402 |
| FblI | GTMKAC | 2 cut(s) | 387, 1096 |
| FokI | GGATG | 9 cut(s) | 646, 1407, 1561, 2396, 2502, 2894, 3215, 3338, 4364 |
| FriOI | GRGCYC | 2 cut(s) | 572, 3807 |
| FspI | TGCGCA | 1 cut(s) | 3448 |
| GlaI | GCGC | 2 cut(s) | 2640, 3448 |
| GsaI | CCCAGC | 3 cut(s) | 2943, 3435, 3666 |
| GsuI | CTGGAG | 5 cut(s) | 22, 1224, 2769, 2976, 3366 |
| HaeIII | GGCC | 7 cut(s) | 346, 380, 1584, 1733, 2340, 2754, 2944 |
| HapII | CCGG | 6 cut(s) | 87, 1299, 2579, 3171, 3428, 3999 |
| HgaI | GACGC | 5 cut(s) | 36, 418, 440, 1081, 2321 |
| HhaI | GCGC | 2 cut(s) | 2641, 3449 |
| Hin1I | GRCGYC | 2 cut(s) | 410, 432 |
| Hin6I | GCGC | 2 cut(s) | 2639, 3447 |
| HinP1I | GCGC | 2 cut(s) | 2639, 3447 |
| HincII | GTYRAC | 4 cut(s) | 388, 1633, 2293, 2311 |
| HindII | GTYRAC | 4 cut(s) | 388, 1633, 2293, 2311 |
| HindIII | AAGCTT | 2 cut(s) | 691, 1880 |
| HpaII | CCGG | 6 cut(s) | 87, 1299, 2579, 3171, 3428, 3999 |
| Hpy166II | GTNNAC | 9 cut(s) | 388, 561, 902, 1097, 1633, 2293, 2311, 3337, 4247 |
| Hpy8I | GTNNAC | 9 cut(s) | 388, 561, 902, 1097, 1633, 2293, 2311, 3337, 4247 |
| Hpy99I | CGWCG | 9 cut(s) | 102, 140, 182, 207, 274, 371, 412, 577, 3098 |
| HpyCH4III | ACNGT | 9 cut(s) | 121, 1228, 2022, 2591, 2627, 4087, 4223, 4321, 4387 |
| HpyCH4IV | ACGT | 5 cut(s) | 155, 2265, 2437, 2555, 3093 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1375, 1646, 1823, 3174, 3863 |
| HpySE526I | ACGT | 5 cut(s) | 155, 2265, 2437, 2555, 3093 |
| Hsp92I | GRCGYC | 2 cut(s) | 410, 432 |
| HspAI | GCGC | 2 cut(s) | 2639, 3447 |
| Kpn2I | TCCGGA | 1 cut(s) | 3170 |
| Ksp22I | TGATCA | 4 cut(s) | 700, 3121, 4297, 4402 |
| LguI | GCTCTTC | 2 cut(s) | 1899, 2982 |
| LmnI | GCTCC | 7 cut(s) | 152, 204, 1002, 1219, 2957, 3173, 3733 |
| LweI | GCATC | 7 cut(s) | 299, 624, 1426, 2324, 2480, 3193, 3730 |
| MabI | ACCWGGT | 1 cut(s) | 1513 |
| MaeII | ACGT | 5 cut(s) | 155, 2265, 2437, 2555, 3093 |
| MbiI | CCGCTC | 1 cut(s) | 147 |
| MfeI | CAATTG | 3 cut(s) | 436, 1089, 2600 |
| MflI | RGATCY | 5 cut(s) | 1529, 2300, 2912, 3070, 3878 |
| MhlI | GDGCHC | 6 cut(s) | 297, 572, 1007, 3105, 3339, 3807 |
| MlsI | TGGCCA | 3 cut(s) | 346, 1584, 2340 |
| MluNI | TGGCCA | 3 cut(s) | 346, 1584, 2340 |
| MlyI | GAGTC | 4 cut(s) | 500, 3416, 3494, 3908 |
| MmeI | TCCRAC | 7 cut(s) | 148, 1526, 1892, 2467, 2522, 3237, 4040 |
| Mox20I | TGGCCA | 3 cut(s) | 346, 1584, 2340 |
| Mph1103I | ATGCAT | 1 cut(s) | 2159 |
| MroI | TCCGGA | 1 cut(s) | 3170 |
| MroXI | GAANNNNTTC | 3 cut(s) | 782, 1605, 2404 |
| MscI | TGGCCA | 3 cut(s) | 346, 1584, 2340 |
| MslI | CAYNNNNRTG | 5 cut(s) | 260, 1010, 1326, 1425, 2661 |
| Msp20I | TGGCCA | 3 cut(s) | 346, 1584, 2340 |
| MspA1I | CMGCKG | 2 cut(s) | 4277, 4361 |
| MspCI | CTTAAG | 1 cut(s) | 3530 |
| MspI | CCGG | 6 cut(s) | 87, 1299, 2579, 3171, 3428, 3999 |
| MspR9I | CCNGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| MunI | CAATTG | 3 cut(s) | 436, 1089, 2600 |
| Mva1269I | GAATGC | 3 cut(s) | 2780, 3555, 4342 |
| MvaI | CCWGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1375, 1646, 1823, 3174, 3863 |
| NcoI | CCATGG | 2 cut(s) | 480, 2135 |
| NdeI | CATATG | 2 cut(s) | 2537, 2620 |
| NlaIV | GGNNCC | 8 cut(s) | 336, 2302, 2407, 2959, 3072, 3823, 3925, 4137 |
| NmeAIII | GCCGAG | 1 cut(s) | 231 |
| NmuCI | GTSAC | 8 cut(s) | 89, 115, 1328, 2465, 2571, 3613, 4217, 4363 |
| NsbI | TGCGCA | 1 cut(s) | 3448 |
| NsiI | ATGCAT | 1 cut(s) | 2159 |
| NspI | RCATGY | 4 cut(s) | 1978, 2166, 3630, 3943 |
| OliI | CACNNNNGTG | 1 cut(s) | 1010 |
| PagI | TCATGA | 1 cut(s) | 4266 |
| PaqCI | CACCTGC | 2 cut(s) | 410, 2166 |
| PasI | CCCWGGG | 1 cut(s) | 3358 |
| PceI | AGGCCT | 1 cut(s) | 1733 |
| PciI | ACATGT | 3 cut(s) | 1974, 2162, 3626 |
| PciSI | GCTCTTC | 2 cut(s) | 1899, 2982 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 581 |
| PctI | GAATGC | 3 cut(s) | 2780, 3555, 4342 |
| PdmI | GAANNNNTTC | 3 cut(s) | 782, 1605, 2404 |
| Pfl23II | CGTACG | 1 cut(s) | 156 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 656, 2126, 2415, 2684, 2828 |
| PfoI | TCCNGGA | 1 cut(s) | 2514 |
| PinAI | ACCGGT | 1 cut(s) | 1298 |
| PleI | GAGTC | 4 cut(s) | 499, 3416, 3493, 3908 |
| PpsI | GAGTC | 4 cut(s) | 499, 3416, 3493, 3908 |
| Ppu21I | YACGTR | 1 cut(s) | 156 |
| PpuMI | RGGWCCY | 1 cut(s) | 978 |
| PscI | ACATGT | 3 cut(s) | 1974, 2162, 3626 |
| PshAI | GACNNNNGTC | 1 cut(s) | 96 |
| PshBI | ATTAAT | 1 cut(s) | 4155 |
| PsiI | TTATAA | 3 cut(s) | 1493, 1595, 2649 |
| Psp5II | RGGWCCY | 1 cut(s) | 978 |
| Psp6I | CCWGG | 7 cut(s) | 341, 1513, 1579, 2340, 2514, 3265, 3357 |
| PspEI | GGTNACC | 1 cut(s) | 89 |
| PspFI | CCCAGC | 3 cut(s) | 2939, 3431, 3662 |
| PspGI | CCWGG | 7 cut(s) | 341, 1513, 1579, 2340, 2514, 3265, 3357 |
| PspLI | CGTACG | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 8 cut(s) | 336, 2302, 2407, 2959, 3072, 3823, 3925, 4137 |
| PspPI | GGNCC | 5 cut(s) | 334, 978, 1354, 2942, 4244 |
| PspPPI | RGGWCCY | 1 cut(s) | 978 |
| PstNI | CAGNNNCTG | 2 cut(s) | 358, 1247 |
| PsuI | RGATCY | 5 cut(s) | 1529, 2300, 2912, 3070, 3878 |
| PvuII | CAGCTG | 2 cut(s) | 4277, 4361 |
| RseI | CAYNNNNRTG | 5 cut(s) | 260, 1010, 1326, 1425, 2661 |
| SalI | GTCGAC | 1 cut(s) | 386 |
| SapI | GCTCTTC | 2 cut(s) | 1899, 2982 |
| Sau96I | GGNCC | 5 cut(s) | 334, 978, 1354, 2942, 4244 |
| ScaI | AGTACT | 2 cut(s) | 2113, 3493 |
| SchI | GAGTC | 4 cut(s) | 500, 3416, 3494, 3908 |
| ScrFI | CCNGG | 7 cut(s) | 343, 1515, 1581, 2342, 2516, 3267, 3359 |
| SduI | GDGCHC | 6 cut(s) | 297, 572, 1007, 3105, 3339, 3807 |
| SexAI | ACCWGGT | 1 cut(s) | 1513 |
| SfaNI | GCATC | 7 cut(s) | 299, 624, 1426, 2324, 2480, 3193, 3730 |
| SfcI | CTRYAG | 3 cut(s) | 803, 1101, 3768 |
| SinI | GGWCC | 4 cut(s) | 334, 978, 1354, 4244 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 260, 1010, 1326, 1425, 2661 |
| SmlI | CTYRAG | 2 cut(s) | 443, 3530 |
| SmoI | CTYRAG | 2 cut(s) | 443, 3530 |
| SpeI | ACTAGT | 1 cut(s) | 2114 |
| SseBI | AGGCCT | 1 cut(s) | 1733 |
| SspI | AATATT | 4 cut(s) | 1524, 2863, 3781, 4153 |
| StuI | AGGCCT | 1 cut(s) | 1733 |
| StyD4I | CCNGG | 7 cut(s) | 341, 1513, 1579, 2340, 2514, 3265, 3357 |
| StyI | CCWWGG | 3 cut(s) | 480, 974, 2135 |
| TaaI | ACNGT | 9 cut(s) | 121, 1228, 2022, 2591, 2627, 4087, 4223, 4321, 4387 |
| TaiI | ACGT | 5 cut(s) | 158, 2268, 2440, 2558, 3096 |
| TatI | WGTACW | 5 cut(s) | 558, 1025, 1141, 2111, 3491 |
| TauI | GCSGC | 4 cut(s) | 268, 315, 927, 2234 |
| TscAI | CASTG | 8 cut(s) | 607, 849, 909, 1231, 1572, 2420, 3344, 4390 |
| TseFI | GTSAC | 8 cut(s) | 89, 115, 1328, 2465, 2571, 3613, 4217, 4363 |
| Tsp45I | GTSAC | 8 cut(s) | 89, 115, 1328, 2465, 2571, 3613, 4217, 4363 |
| TspGWI | ACGGA | 4 cut(s) | 191, 280, 355, 1022 |
| TspRI | CASTG | 8 cut(s) | 607, 849, 909, 1231, 1572, 2420, 3344, 4390 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 656, 2126, 2415, 2684, 2828 |
| Vha464I | CTTAAG | 1 cut(s) | 3530 |
| VneI | GTGCAC | 1 cut(s) | 3335 |
| VpaK11BI | GGWCC | 4 cut(s) | 334, 978, 1354, 4244 |
| VspI | ATTAAT | 1 cut(s) | 4155 |
| XapI | RAATTY | 9 cut(s) | 246, 463, 713, 907, 1158, 1801, 3229, 3245, 3306 |
| XbaI | TCTAGA | 2 cut(s) | 1897, 3418 |
| XceI | RCATGY | 4 cut(s) | 1978, 2166, 3630, 3943 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1685 |
| XmiI | GTMKAC | 2 cut(s) | 387, 1096 |
| XmnI | GAANNNNTTC | 3 cut(s) | 782, 1605, 2404 |
| ZrmI | AGTACT | 2 cut(s) | 2113, 3493 |
| Zsp2I | ATGCAT | 1 cut(s) | 2159 |