Rh1DG159500

acyl-activating enzyme

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
32915322 .. 32918387
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG159500.1

Sequence Viewer

Length: 393 bp
ATGTTTATATATTTTTCAAAGGCATTCCCATTTTCTATTATGTGGGTGCATGAATTAGAAGTGCCAGTATTTGGGTCTCTTGCCATCAATTCTCTGAATGGAAATATTATATGTTGCTTGGTGGATGGGCATGTTCTTGCATTTAATACAAGTGGATCTATTATTTGGAGGTATAGAACTGCTGGGCCTGTATTTGCTGGAGCCTGCATATCTTCTGCTCTTCCCTTTCAGCTACTTGTCTGTTCCAGAGATGGAAACATCTATTCACTCGAACTCGAATCAGGAGGTTTACTCTGGGAATACAATGTTAAGGATCCAATTACTTCATCTGCCTATGTCGATGAGCACCTGAGCTTGGTGTCTGATCAGTCTAACTTTCCCGACCGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

4.93

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ACSF4 PF13570 10 - 116 3.5e-22 Beta-alanine-activating enzyme, beta-propeller
PQQ_2 PF13360 13 - 112 1.5e-06 Outer membrane protein assembly factor BamB
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 1 cut(s) 385
AclWI GGATC 3 cut(s) 163, 308, 321
AfiI CCNNNNNNNGG 3 cut(s) 71, 355, 387
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 2 cut(s) 232, 354
AluI AGCT 2 cut(s) 232, 354
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 3 cut(s) 163, 308, 321
AoxI GGCC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 185
BamHI GGATCC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 3 cut(s) 92, 119, 245
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 202, 315
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 355, 387
Bse1I ACTGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 3 cut(s) 71, 355, 387
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 71, 355, 387
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 3 cut(s) 155, 313, 364
BspACI CCGC 1 cut(s) 385
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 202, 315
BspMI ACCTGC 1 cut(s) 378
BspPI GGATC 3 cut(s) 163, 308, 321
BspQI GCTCTTC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 65
BssMI GATC 3 cut(s) 155, 313, 364
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 3 cut(s) 158, 316, 367
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 155, 313, 364
BstMCI CGRYCG 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 155, 313
BstYI RGATCY 2 cut(s) 155, 313
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 2 cut(s) 50, 131
CviJI RGCY 4 cut(s) 187, 203, 232, 354
CviKI_1 RGCY 4 cut(s) 187, 203, 232, 354
DdeI CTNAG 1 cut(s) 350
DpnI GATC 3 cut(s) 157, 315, 366
DpnII GATC 3 cut(s) 155, 313, 364
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 81
FaeI CATG 2 cut(s) 53, 134
FatI CATG 2 cut(s) 49, 130
FbaI TGATCA 1 cut(s) 364
FokI GGATG 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 2 cut(s) 53, 134
HinfI GANTC 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 96, 364
Hpy188III TCNNGA 3 cut(s) 246, 282, 380
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4V TGCA 3 cut(s) 49, 140, 207
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 2 cut(s) 53, 134
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 3 cut(s) 155, 313, 364
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 200
MalI GATC 3 cut(s) 157, 315, 366
MboI GATC 3 cut(s) 155, 313, 364
MboII GAAGA 2 cut(s) 204, 212
MflI RGATCY 2 cut(s) 155, 313
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 53, 88, 318
MnlI CCTC 2 cut(s) 162, 278
MseI TTAA 2 cut(s) 144, 309
Mva1269I GAATGC 1 cut(s) 23
NdeII GATC 3 cut(s) 155, 313, 364
NlaIII CATG 2 cut(s) 53, 134
NlaIV GGNNCC 2 cut(s) 202, 315
NspI RCATGY 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 225
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 202, 315
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 2 cut(s) 155, 313
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 144, 309
Sau3AI GATC 3 cut(s) 155, 313, 364
Sau96I GGNCC 1 cut(s) 185
SduI GDGCHC 1 cut(s) 348
SetI ASST 6 cut(s) 173, 234, 289, 351, 356, 392
Sse9I AATT 3 cut(s) 53, 88, 318
SsiI CCGC 1 cut(s) 385
SspI AATATT 1 cut(s) 106
TaqI TCGA 3 cut(s) 270, 276, 339
TasI AATT 3 cut(s) 53, 88, 318
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 144, 309
Tru9I TTAA 2 cut(s) 144, 309
TspDTI ATGAA 2 cut(s) 66, 315
Van91I CCANNNNNTGG 1 cut(s) 71
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.