AT5G43822

Casein Kinase 2 substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002014
Physical Location & Seq
Forward (+)
17618740 .. 17621979
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43822.1

Sequence Viewer

Length: 588 bp
ATGGAGGCAGTAATTAGGAAATGGCAGCAGAAGTTCAGAAAAGGGAAGGAGGAGATGGAAAAGTGGGAGGCACTTCAAGTTCGATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATTGAAGACGCAGTTGTGCAGCAACAGATGGGTCAACTGGAGTCTCTATTGCGTTCCATGAAAAACGTTATGGAGGAATTCTGGGGCTGTGTTTTGACATTTGAGAAGCTACATCGGGACGGTTTACAGTTACGTGAAATTGAATCAAGCAAGAGGCGAGTAGAGGAACGAATTGGAGTAAAACCGTGCATTACTGATTGCTTGGAGGGACTTTCTATTCTTTATGACATGCATCAATCAGAATACCATCTTAAATCTTCAATTCTTTCCGTACTTTCATGTCTTATCCTGAAACCAAGTCCTGGTGATCTAAACGCGCTACAATACCTCGTGGTTGATCAGCCGAATATCCCGAAAGATGAAGTACAACACATTTTCGATGTCATATTCGCGGAAGAGATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CK2S

Protein Analysis

195

Amino Acids

22.72

Weight (kDa)

6.24

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CA109-like PF15011 7 - 167 3.6e-52 Ribosome biogenesis protein C1orf109-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 2 cut(s) 497, 572
AciI CCGC 1 cut(s) 572
AclI AACGTT 1 cut(s) 246
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 2 cut(s) 453, 546
AfiI CCNNNNNNNGG 2 cut(s) 99, 482
AgsI TTSAA 4 cut(s) 77, 185, 323, 441
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 3 cut(s) 153, 161, 289
AluI AGCT 3 cut(s) 153, 161, 289
Alw26I GTCTC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 25, 199
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 497
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 37, 211
BccI CCATC 4 cut(s) 49, 78, 202, 435
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 228
BisI GCNGC 2 cut(s) 26, 200
BlsI GCNGC 2 cut(s) 27, 201
Bme1390I CCNGG 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 158, 421
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 482
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 99, 482
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 37, 211
BsgI GTGCAG 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 497, 572
BslFI GGGAC 3 cut(s) 76, 311, 402
BslI CCNNNNNNNGG 2 cut(s) 99, 482
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 76, 311, 402
Bsp143I GATC 3 cut(s) 487, 517, 579
BspACI CCGC 1 cut(s) 572
BspFNI CGCG 2 cut(s) 497, 572
BsrI ACTGG 1 cut(s) 222
BssMI GATC 3 cut(s) 487, 517, 579
BssSI CACGAG 1 cut(s) 509
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 302, 309, 366
Bst6I CTCTTC 2 cut(s) 101, 570
BstBAI YACGTR 1 cut(s) 314
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 2 cut(s) 497, 572
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 3 cut(s) 490, 520, 582
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 487, 517, 579
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 481
BstUI CGCG 2 cut(s) 497, 572
BstV1I GCAGC 2 cut(s) 37, 211
BstV2I GAAGAC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 117
CfoI GCGC 1 cut(s) 499
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 452, 545
CviAII CATG 4 cut(s) 146, 238, 409, 459
CviJI RGCY 5 cut(s) 153, 161, 267, 289, 523
CviKI_1 RGCY 5 cut(s) 153, 161, 267, 289, 523
CviQI GTAC 2 cut(s) 452, 545
DpnI GATC 3 cut(s) 489, 519, 581
DpnII GATC 3 cut(s) 487, 517, 579
Eam1104I CTCTTC 2 cut(s) 101, 570
EarI CTCTTC 2 cut(s) 101, 570
Eco57I CTGAAG 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 414
FaeI CATG 4 cut(s) 149, 241, 412, 462
FaiI YATR 8 cut(s) 147, 156, 239, 251, 405, 410, 460, 566
FaqI GGGAC 3 cut(s) 76, 311, 402
FatI CATG 4 cut(s) 145, 237, 408, 458
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 26, 200
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 26, 200
GlaI GCGC 1 cut(s) 498
GluI GCNGC 2 cut(s) 26, 200
GsuI CTGGAG 1 cut(s) 239
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 499
Hin1II CATG 4 cut(s) 149, 241, 412, 462
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 2 cut(s) 221, 323
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 215, 305
Hpy188I TCNGA 2 cut(s) 38, 421
Hpy188III TCNNGA 5 cut(s) 100, 121, 296, 469, 532
Hpy8I GTNNAC 2 cut(s) 215, 305
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 3 cut(s) 302, 309, 366
HpyCH4IV ACGT 2 cut(s) 246, 313
HpyCH4V TGCA 4 cut(s) 139, 199, 369, 412
HpySE526I ACGT 2 cut(s) 246, 313
Hsp92II CATG 4 cut(s) 149, 241, 412, 462
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 487, 517, 579
LmnI GCTCC 2 cut(s) 150, 158
LpnPI CCDG 9 cut(s) 85, 116, 134, 185, 203, 247, 468, 482, 495
Lsp1109I GCAGC 2 cut(s) 37, 211
LweI GCATC 2 cut(s) 158, 421
MaeII ACGT 2 cut(s) 246, 313
MaeIII GTNAC 1 cut(s) 309
MalI GATC 3 cut(s) 489, 519, 581
MboI GATC 3 cut(s) 487, 517, 579
MboII GAAGA 5 cut(s) 88, 102, 197, 429, 587
MluCI AATT 5 cut(s) 12, 257, 318, 351, 441
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 8 cut(s) 43, 61, 104, 247, 327, 337, 379, 518
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 2 cut(s) 497, 572
NdeII GATC 3 cut(s) 487, 517, 579
NlaIII CATG 4 cut(s) 149, 241, 412, 462
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 1 cut(s) 412
PfeI GAWTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 2 cut(s) 27, 201
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 314
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
RsaI GTAC 2 cut(s) 453, 546
RsaNI GTAC 2 cut(s) 452, 545
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 26, 200
Sau3AI GATC 3 cut(s) 487, 517, 579
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 483
SetI ASST 6 cut(s) 155, 163, 249, 291, 316, 510
SfaNI GCATC 2 cut(s) 158, 421
Sse9I AATT 5 cut(s) 12, 257, 318, 351, 441
SsiI CCGC 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 481
TaaI ACNGT 3 cut(s) 302, 309, 366
TaiI ACGT 2 cut(s) 249, 316
TaqI TCGA 2 cut(s) 82, 558
TasI AATT 5 cut(s) 12, 257, 318, 351, 441
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TseI GCWGC 2 cut(s) 25, 199
TspDTI ATGAA 3 cut(s) 254, 447, 555
TspGWI ACGGA 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 412
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.