Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Reverse (-)

26295017 .. 26298593

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGTGATGGTGAAGAAATACCAGCATAGGTTCAGGAATGTGAGGGACGAGATGGATTGTTGGGACAAGCTTCAAGTTCTCTTAGTTTCTCAGTTCAGAAACGCCTCCACCATCATCCAGAGGTTGCAGGTTCTTCAAGATTCCAAAAACTATGGTGGCTTGAATGAACTTGTTGATATTCAAGAGGTGGTCTTGGTGAAGCAGATGGAGTCTTTGCAAAAACTCTTGCTTTCCATGAAAAATACCATGGAAGAATTTCACTGCATTGTAATGTCTCTTGGGAGGATTCATCGTGATGGTAGGCACATGATAAAAGGTGGTTCTAGTCAGCTGAGTACAAAACAACTACAGCGCGAGTTGGTGTACCTTTTGAAGTCGTCATTAGTTTCAGCTCTATCAGCGATTACCTTTAAACTGAGTACCAGTGATTTGAGTTCGCTGCAGCAAATCTTGATTGATCAGCCTAACATTCCCAGGGAAGAAGTTCAATTTGTCTTTGATATCATATTTGCACAAGAGAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

176

Amino Acids

20.4

Weight (kDa)

7.74

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	7 - 119	1.8e-30	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccII	CGCG	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	3 cut(s)	340, 368, 424
AgsI	TTSAA	6 cut(s)	77, 140, 166, 185, 376, 491
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	73, 334, 395
AluI	AGCT	3 cut(s)	73, 334, 395
Alw26I	GTCTC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	442, 445
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	2 cut(s)	258, 486
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	25, 211
BbvI	GCAGC	2 cut(s)	429, 457
BccI	CCATC	5 cut(s)	4, 49, 122, 202, 293
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	350, 443
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	443, 446
BlsI	GCNGC	2 cut(s)	444, 447
Bme1390I	CCNGG	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	249, 476, 477
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	3 cut(s)	249, 476, 477
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	107, 326, 410
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	429, 457
Bsh1236I	CGCG	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	62, 80
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	62, 80
Bsp143I	GATC	1 cut(s)	460
Bsp19I	CCATGG	1 cut(s)	249
BspCNI	CTCAG	3 cut(s)	106, 327, 411
BspFNI	CGCG	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	249, 476, 477
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	85, 93, 335, 419
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	2 cut(s)	350, 443
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	429, 457
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 433
BveI	ACCTGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	339, 367, 423
CviAII	CATG	3 cut(s)	238, 250, 310
CviJI	RGCY	5 cut(s)	73, 162, 334, 395, 466
CviKI_1	RGCY	5 cut(s)	73, 162, 334, 395, 466
CviQI	GTAC	3 cut(s)	339, 367, 423
DdeI	CTNAG	4 cut(s)	85, 93, 335, 419
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DraI	TTTAAA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	476
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	241, 253, 313
FaiI	YATR	6 cut(s)	30, 156, 239, 251, 311, 509
FaqI	GGGAC	2 cut(s)	62, 80
FatI	CATG	3 cut(s)	237, 249, 309
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	443, 446
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	443, 446
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	443, 446
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	241, 253, 313
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	143, 212, 289
HphI	GGTGA	2 cut(s)	25, 211
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	6 cut(s)	37, 121, 140, 185, 296, 454
Hpy8I	GTNNAC	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	130, 220, 267, 445, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	4 cut(s)	85, 93, 335, 419
Hsp92II	CATG	3 cut(s)	241, 253, 313
HspAI	GCGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	460
LpnPI	CCDG	7 cut(s)	22, 38, 116, 134, 439, 463, 490
Lsp1109I	GCAGC	2 cut(s)	429, 457
MaeI	CTAG	1 cut(s)	327
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	4 cut(s)	28, 128, 266, 494
MluCI	AATT	3 cut(s)	257, 491, 523
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	39, 117, 118, 181, 279
MroXI	GAANNNNTTC	2 cut(s)	258, 486
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	272, 297
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	241, 253, 313
PasI	CCCWGGG	1 cut(s)	477
PdmI	GAANNNNTTC	2 cut(s)	258, 486
PfeI	GAWTC	2 cut(s)	143, 289
PkrI	GCNGC	2 cut(s)	444, 447
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	340, 368, 424
RsaNI	GTAC	3 cut(s)	339, 367, 423
RseI	CAYNNNNRTG	2 cut(s)	272, 297
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	443, 446
Sau3AI	GATC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	478
SfcI	CTRYAG	2 cut(s)	350, 443
SmiMI	CAYNNNNRTG	2 cut(s)	272, 297
Sse9I	AATT	3 cut(s)	257, 491, 523
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	249
TasI	AATT	3 cut(s)	257, 491, 523
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	143, 289
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	269, 433
TseI	GCWGC	2 cut(s)	442, 445
TspDTI	ATGAA	3 cut(s)	183, 254, 281
TspRI	CASTG	2 cut(s)	269, 433
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	2 cut(s)	258, 486
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.