Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Reverse (-)

36249652 .. 36254114

Gene Structure 4463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGGCGATGGTGAAGAAATACCAGCAGAGGTTCAGGAAGGTTAGGGACGAGATGGAGACCTGGGCCCACCTTCAATCTCTCTTGATTTCCCAGTTCAGAAACGCCTCCTCCATCATCCTCAGGTTGCAGGTGCTTCAAGATTCAACCAACTACGGTGGTGGCTTGAATGGGGTTCCCCATATTCAAGAGGCCGTGCTGGTTAAGCAGATGGAGTCATTGCAAGAACTCTTGCTTTCCATGAACAACACCATGGAACAGTTTCATGGTATTGTCTTGTCTCTTGGGAGGATTCATCGTGATGGTAGGCAGATGGTGAAAGGTGGTTCTAGTCAGCTGAGTGTCAAACAACTGCAGCAGCGAGTTGGTGTGAAACCCAGTCTCGCCGATTGCTTAGATGGGCTCATGCTTCTTCTGGACATGCACTGCTCTGAGTATCTTTTAAAGTCATCATTGGTTTCAGCACTATCAGAACTTATTTTGAAACCCAGTGCCAGTGATCTGGGTTCCCTCCAGCAAATCTTGATTGATCAGCCCAACATCCCCAAGGAGGAAGTTCAATTCATCTTTGATATCATATTTGCTGAAGAAATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

199

Amino Acids

22.44

Weight (kDa)

5.95

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	7 - 169	5.7e-51	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	550
AgsI	TTSAA	7 cut(s)	77, 140, 147, 169, 188, 484, 560
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	3 cut(s)	53, 285, 386
AoxI	GGCC	2 cut(s)	66, 192
ApaI	GGGCCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	355, 358
ApoI	RAATTY	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	66, 67
AsuHPI	GGTGA	2 cut(s)	25, 328
AxyI	CCTNAGG	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	70, 405
BbvI	GCAGC	2 cut(s)	367, 370
BccI	CCATC	7 cut(s)	4, 49, 122, 205, 296, 307, 392
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	3 cut(s)	53, 285, 386
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	356, 359
BlsI	GCNGC	2 cut(s)	357, 360
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	66, 67
BmiI	GGNNCC	3 cut(s)	68, 177, 508
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	3 cut(s)	88, 372, 483
BmuI	ACTGGG	3 cut(s)	88, 372, 483
BpmI	CTGGAG	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	63, 252, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	4 cut(s)	94, 378, 489, 495
Bse21I	CCTNAGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	63, 252, 546
BseGI	GGATG	2 cut(s)	117, 540
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	136, 329, 423
BseNI	ACTGG	4 cut(s)	94, 378, 489, 495
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	367, 370
BshFI	GGCC	2 cut(s)	68, 194
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	3 cut(s)	53, 285, 386
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	68, 194
Bso31I	GGTCTC	1 cut(s)	53
Bsp120I	GGGCCC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	70, 405
Bsp143I	GATC	2 cut(s)	499, 529
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	2 cut(s)	68, 194
BspCNI	CTCAG	3 cut(s)	135, 330, 424
BspLI	GGNNCC	3 cut(s)	68, 177, 508
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	94, 378, 489, 495
BssECI	CCNNGG	3 cut(s)	63, 252, 546
BssMI	GATC	2 cut(s)	499, 529
BssT1I	CCWWGG	2 cut(s)	252, 546
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	158, 261
BstDEI	CTNAG	4 cut(s)	122, 338, 394, 432
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	117, 540
BstKTI	GATC	2 cut(s)	502, 532
BstMAI	GTCTC	3 cut(s)	53, 285, 386
BstMBI	GATC	2 cut(s)	499, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	367, 370
BstXI	CCANNNNNNTGG	1 cut(s)	502
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	68, 194
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	117, 540
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	424, 496, 502
BveI	ACCTGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	66, 67
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	5 cut(s)	241, 253, 266, 406, 421
CviJI	RGCY	6 cut(s)	68, 165, 194, 337, 403, 535
CviKI_1	RGCY	6 cut(s)	68, 165, 194, 337, 403, 535
DdeI	CTNAG	4 cut(s)	122, 338, 394, 432
DpnI	GATC	2 cut(s)	501, 531
DpnII	GATC	2 cut(s)	499, 529
DraI	TTTAAA	1 cut(s)	444
Eco130I	CCWWGG	2 cut(s)	252, 546
Eco24I	GRGCYC	2 cut(s)	70, 405
Eco31I	GGTCTC	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	252, 546
EcoT38I	GRGCYC	2 cut(s)	70, 405
ErhI	CCWWGG	2 cut(s)	252, 546
FaeI	CATG	5 cut(s)	244, 256, 269, 409, 424
FaiI	YATR	7 cut(s)	183, 242, 254, 267, 407, 422, 578
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	240, 252, 265, 405, 420
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	356, 359
FokI	GGATG	2 cut(s)	104, 527
FriOI	GRGCYC	2 cut(s)	70, 405
Fsp4HI	GCNGC	2 cut(s)	356, 359
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	356, 359
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	2 cut(s)	68, 194
Hin1II	CATG	5 cut(s)	244, 256, 269, 409, 424
HinfI	GANTC	3 cut(s)	143, 215, 292
HphI	GGTGA	2 cut(s)	25, 328
Hpy188I	TCNGA	3 cut(s)	101, 433, 472
Hpy188III	TCNNGA	7 cut(s)	37, 85, 140, 188, 299, 416, 523
HpyAV	CCTTC	2 cut(s)	34, 83
HpyCH4III	ACNGT	2 cut(s)	158, 261
HpyCH4V	TGCA	4 cut(s)	130, 223, 355, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	4 cut(s)	122, 338, 394, 432
Hsp92II	CATG	5 cut(s)	244, 256, 269, 409, 424
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	499, 529
Lsp1109I	GCAGC	2 cut(s)	367, 370
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	501, 531
MboI	GATC	2 cut(s)	499, 529
MboII	GAAGA	3 cut(s)	28, 404, 599
MhlI	GDGCHC	2 cut(s)	70, 405
MluCI	AATT	2 cut(s)	560, 591
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	8 cut(s)	24, 118, 121, 131, 184, 282, 521, 544
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	204, 443
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	499, 529
NlaIII	CATG	5 cut(s)	244, 256, 269, 409, 424
NlaIV	GGNNCC	3 cut(s)	68, 177, 508
NspI	RCATGY	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	143, 292
PkrI	GCNGC	2 cut(s)	357, 360
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	68, 177, 508
PspOMI	GGGCCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	66, 67
PstI	CTGCAG	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	204, 443
SatI	GCNGC	2 cut(s)	356, 359
Sau3AI	GATC	2 cut(s)	499, 529
Sau96I	GGNCC	2 cut(s)	66, 67
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	70, 405
SetI	ASST	8 cut(s)	35, 45, 65, 75, 128, 135, 325, 339
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	2 cut(s)	560, 591
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	252, 546
TaaI	ACNGT	2 cut(s)	158, 261
TasI	AATT	2 cut(s)	560, 591
TfiI	GAWTC	2 cut(s)	143, 292
Tru1I	TTAA	2 cut(s)	204, 443
Tru9I	TTAA	2 cut(s)	204, 443
TscAI	CASTG	3 cut(s)	431, 496, 502
TseI	GCWGC	2 cut(s)	355, 358
TspDTI	ATGAA	4 cut(s)	254, 257, 284, 553
TspRI	CASTG	3 cut(s)	431, 496, 502
XapI	RAATTY	1 cut(s)	591
XceI	RCATGY	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.