Rh7BG286800

Casein Kinase 2 substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002014
Physical Location & Seq
Forward (+)
26944669 .. 26948714
4046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG286800.1

Sequence Viewer

Length: 600 bp
ATGGAGGCGACGGTGAAGAAATACCAGCAGAGGTTCAGGAAGGTTAGGGACGAGATGGAGACCTGGGCCCACCTTCAATCTCTCTTGATTTCCCAGTTCAGAATGGCCTCCTCCATCATCCTCAGGTTGCAGGTGCTTCAAGATTCAACCAACTACGGTGGTGGCTTGAATGGAGTTCCCCATATTCAAGAGGCTGTGCTGCTCAAGCAGATGGAGTCATTGCAAAATCGCTTGCTTTCCATGAACAACACCATGGATCAGTTTCATGGTATTGTGTTGTCTCTTGGGAGGATTCATCGTGACGGTAGGCAGATGGTAAAAGGTGGTTCTAGTCAGCTGAGTGTCAAACAACTGCAGCAGCGAGTTGGTGTGAAACCCAGTCTCGCCGATTGCGTAGATGGGCTCATGCTTCTTCAGGACATGCACTGCTCTGAGTACCTTTTAAAGTCATCATTGGTTTCAGCACTATCAGAACTTACTTTGAAACCCAGTGCCAGTGATCTGGGTTCTCTCCAGCAAATCTTGATTGATCAGCCCAACATCCCCAAGGAGGAAGTTCAATTCATCTTTGATATCATATTTGCTGAAGAAATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CK2S

Protein Analysis

199

Amino Acids

22.44

Weight (kDa)

6.51

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CA109-like PF15011 7 - 169 1.1e-48 Ribosome biogenesis protein C1orf109-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 550
AgsI TTSAA 7 cut(s) 77, 140, 147, 169, 188, 484, 560
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw26I GTCTC 3 cut(s) 53, 285, 386
AlwI GGATC 1 cut(s) 264
AoxI GGCC 2 cut(s) 66, 105
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 199, 355, 358
ApoI RAATTY 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 66, 67
AsuHPI GGTGA 1 cut(s) 25
AxyI CCTNAGG 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 2 cut(s) 70, 405
BbvI GCAGC 3 cut(s) 186, 367, 370
BccI CCATC 5 cut(s) 49, 122, 205, 307, 392
BciT130I CCWGG 1 cut(s) 64
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 53, 285, 386
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 200, 356, 359
BlsI GCNGC 3 cut(s) 201, 357, 360
Bme1390I CCNGG 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 66, 67
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 3 cut(s) 88, 372, 483
BmuI ACTGGG 3 cut(s) 88, 372, 483
BpmI CTGGAG 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 63, 252, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse1I ACTGG 4 cut(s) 94, 378, 489, 495
Bse21I CCTNAGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 63, 252, 546
BseGI GGATG 2 cut(s) 117, 540
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 136, 329, 423
BseNI ACTGG 4 cut(s) 94, 378, 489, 495
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 3 cut(s) 186, 367, 370
BshFI GGCC 2 cut(s) 68, 107
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 3 cut(s) 53, 285, 386
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 2 cut(s) 68, 107
Bso31I GGTCTC 1 cut(s) 53
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 70, 405
Bsp143I GATC 3 cut(s) 256, 499, 529
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 2 cut(s) 68, 107
BspCNI CTCAG 3 cut(s) 135, 330, 424
BspLI GGNNCC 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 4 cut(s) 94, 378, 489, 495
BssECI CCNNGG 3 cut(s) 63, 252, 546
BssMI GATC 3 cut(s) 256, 499, 529
BssT1I CCWWGG 2 cut(s) 252, 546
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 3 cut(s) 13, 158, 305
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 122, 338, 432
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 117, 540
BstKTI GATC 3 cut(s) 259, 502, 532
BstMAI GTCTC 3 cut(s) 53, 285, 386
BstMBI GATC 3 cut(s) 256, 499, 529
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 186, 367, 370
BstXI CCANNNNNNTGG 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 122
BsuRI GGCC 2 cut(s) 68, 107
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 117, 540
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 3 cut(s) 424, 496, 502
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 66, 67
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 5 cut(s) 241, 253, 266, 406, 421
CviJI RGCY 7 cut(s) 68, 107, 165, 194, 337, 403, 535
CviKI_1 RGCY 7 cut(s) 68, 107, 165, 194, 337, 403, 535
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 3 cut(s) 122, 338, 432
DpnI GATC 3 cut(s) 258, 501, 531
DpnII GATC 3 cut(s) 256, 499, 529
DraI TTTAAA 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 252, 546
Eco24I GRGCYC 2 cut(s) 70, 405
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 398
Eco81I CCTNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 62
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 252, 546
EcoT38I GRGCYC 2 cut(s) 70, 405
ErhI CCWWGG 2 cut(s) 252, 546
FaeI CATG 5 cut(s) 244, 256, 269, 409, 424
FaiI YATR 7 cut(s) 183, 242, 254, 267, 407, 422, 578
FaqI GGGAC 1 cut(s) 62
FatI CATG 5 cut(s) 240, 252, 265, 405, 420
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 3 cut(s) 200, 356, 359
FokI GGATG 2 cut(s) 104, 527
FriOI GRGCYC 2 cut(s) 70, 405
Fsp4HI GCNGC 3 cut(s) 200, 356, 359
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 200, 356, 359
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 2 cut(s) 68, 107
Hin1II CATG 5 cut(s) 244, 256, 269, 409, 424
HinfI GANTC 3 cut(s) 143, 215, 292
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 101, 433, 472
Hpy188III TCNNGA 7 cut(s) 37, 85, 140, 188, 299, 416, 523
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 34, 83
HpyCH4III ACNGT 3 cut(s) 13, 158, 305
HpyCH4V TGCA 4 cut(s) 130, 223, 355, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 122, 338, 432
Hsp92II CATG 5 cut(s) 244, 256, 269, 409, 424
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 256, 499, 529
Lsp1109I GCAGC 3 cut(s) 186, 367, 370
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 258, 501, 531
MboI GATC 3 cut(s) 256, 499, 529
MboII GAAGA 3 cut(s) 28, 404, 599
MhlI GDGCHC 2 cut(s) 70, 405
MluCI AATT 2 cut(s) 560, 591
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 7 cut(s) 24, 118, 121, 131, 184, 282, 544
MseI TTAA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 205
NcoI CCATGG 1 cut(s) 252
NdeII GATC 3 cut(s) 256, 499, 529
NlaIII CATG 5 cut(s) 244, 256, 269, 409, 424
NlaIV GGNNCC 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 424
PaqCI CACCTGC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PfeI GAWTC 2 cut(s) 143, 292
PkrI GCNGC 3 cut(s) 201, 357, 360
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 68
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 66, 67
PstI CTGCAG 1 cut(s) 357
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 3 cut(s) 200, 356, 359
Sau3AI GATC 3 cut(s) 256, 499, 529
Sau96I GGNCC 2 cut(s) 66, 67
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 70, 405
SetI ASST 9 cut(s) 35, 45, 65, 75, 128, 135, 325, 339, 441
SfcI CTRYAG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 560, 591
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 2 cut(s) 252, 546
TaaI ACNGT 3 cut(s) 13, 158, 305
TasI AATT 2 cut(s) 560, 591
TfiI GAWTC 2 cut(s) 143, 292
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 3 cut(s) 431, 496, 502
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 199, 355, 358
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 4 cut(s) 254, 257, 284, 553
TspRI CASTG 3 cut(s) 431, 496, 502
XapI RAATTY 1 cut(s) 591
XceI RCATGY 1 cut(s) 424
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.