Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Forward (+)

32273556 .. 32276804

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG294800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGCGATGGTGAAGAAATACCAGCAGAGGTTCAGGAAGGTTAGGGAGGAGATGGAGACCTGGGCCCGCCTTCAATCTCTCTTGATTTCCCAGTTCAGAATGGCCTCCTCCACCATCCTCAGGTTGCAGGTGCTTCAAGATTCCACCAACTACGGTGGTGGCTTGAATGGAGTTGCCCATATTCAAGAGGCCGTGCTGCTCAAGCAGATGGAGTCATTGCAAAAACGCTTGCTTTCCATGAACAACACCATGGATCAGTTTCATGCTATTGTGTTGTCTCTTGGGAGGATTCATCGTGATGGTAGGCAGATGGTAAAAGGTGGTTCTAGTCAGCTGACTGTCAAACAACTGCAGCAGCGAGTTGGTGTGAAACCCAGTCTCGCCGATTGCGTAGATGGGCTCATGCTTCTTCAGGACATGCACTGCTCTGAGTATGTGACCTCTCTCTGTTTTGATTTGTGCATCCTTAAGTTTACCAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

162

Amino Acids

18.52

Weight (kDa)

9.32

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	7 - 147	1.8e-41	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	77, 140, 169, 188
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	3 cut(s)	53, 285, 386
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	66, 105, 192
ApaI	GGGCCC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	199, 355, 358
AspS9I	GGNCC	2 cut(s)	66, 67
AsuHPI	GGTGA	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	70, 405
BbvI	GCAGC	3 cut(s)	186, 367, 370
BccI	CCATC	7 cut(s)	4, 49, 125, 205, 296, 307, 392
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	53, 285, 386
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	353
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	3 cut(s)	200, 356, 359
BlsI	GCNGC	3 cut(s)	201, 357, 360
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	66, 67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	2 cut(s)	88, 372
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	2 cut(s)	88, 372
BpuEI	CTTGAG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	63, 252, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	94, 378
Bse21I	CCTNAGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	63, 252, 480
BseGI	GGATG	2 cut(s)	117, 465
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	136, 423
BseNI	ACTGG	2 cut(s)	94, 378
BseRI	GAGGAG	2 cut(s)	65, 100
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	186, 367, 370
BshFI	GGCC	3 cut(s)	68, 107, 194
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	3 cut(s)	53, 285, 386
BsnI	GGCC	3 cut(s)	68, 107, 194
Bso31I	GGTCTC	1 cut(s)	53
Bsp120I	GGGCCC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	70, 405
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	3 cut(s)	68, 107, 194
BspCNI	CTCAG	2 cut(s)	135, 424
BspLI	GGNNCC	1 cut(s)	68
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	94, 378
BssECI	CCNNGG	3 cut(s)	63, 252, 480
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	252, 480
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	158, 343
BstAFI	CTTAAG	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	70, 233
BstDEI	CTNAG	2 cut(s)	122, 432
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	117, 465
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	3 cut(s)	53, 285, 386
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	186, 367, 370
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	68, 107, 194
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	117, 465
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	70, 233
Cfr13I	GGNCC	2 cut(s)	66, 67
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	5 cut(s)	241, 253, 266, 406, 421
CviJI	RGCY	6 cut(s)	68, 107, 165, 194, 337, 403
CviKI_1	RGCY	6 cut(s)	68, 107, 165, 194, 337, 403
DdeI	CTNAG	2 cut(s)	122, 432
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	252, 480
Eco24I	GRGCYC	2 cut(s)	70, 405
Eco31I	GGTCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	252, 480
EcoT38I	GRGCYC	2 cut(s)	70, 405
ErhI	CCWWGG	2 cut(s)	252, 480
FaeI	CATG	5 cut(s)	244, 256, 269, 409, 424
FaiI	YATR	7 cut(s)	183, 242, 254, 267, 407, 422, 438
FatI	CATG	5 cut(s)	240, 252, 265, 405, 420
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	200, 356, 359
FokI	GGATG	2 cut(s)	104, 452
FriOI	GRGCYC	2 cut(s)	70, 405
Fsp4HI	GCNGC	3 cut(s)	200, 356, 359
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	3 cut(s)	200, 356, 359
HaeIII	GGCC	3 cut(s)	68, 107, 194
Hin1II	CATG	5 cut(s)	244, 256, 269, 409, 424
HinfI	GANTC	3 cut(s)	143, 215, 292
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	2 cut(s)	101, 433
Hpy188III	TCNNGA	6 cut(s)	37, 85, 140, 188, 299, 416
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	2 cut(s)	34, 83
HpyCH4III	ACNGT	2 cut(s)	158, 343
HpyCH4V	TGCA	5 cut(s)	130, 223, 355, 424, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	122, 432
Hsp92II	CATG	5 cut(s)	244, 256, 269, 409, 424
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	22, 38, 49, 76, 107, 109, 116, 391, 401
Lsp1109I	GCAGC	3 cut(s)	186, 367, 370
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	28, 404
MhlI	GDGCHC	2 cut(s)	70, 405
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	8 cut(s)	24, 43, 118, 121, 131, 184, 282, 454
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	337
MspCI	CTTAAG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	244, 256, 269, 409, 424
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	143, 292
PkrI	GCNGC	3 cut(s)	201, 357, 360
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	68
PspOMI	GGGCCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	66, 67
PstI	CTGCAG	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	200, 356, 359
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	66, 67
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	70, 405
SetI	ASST	8 cut(s)	35, 45, 65, 128, 135, 325, 339, 446
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	203, 470
SmoI	CTYRAG	2 cut(s)	203, 470
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	252, 480
TaaI	ACNGT	2 cut(s)	158, 343
TfiI	GAWTC	2 cut(s)	143, 292
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	199, 355, 358
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	254, 257, 284
TspRI	CASTG	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	470
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.