Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Forward (+)

30990597 .. 30993007

Gene Structure 2411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1245100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGGCCATGGTGAAGAAGTATCAGCAGAGGTTCAGGAAGGTGAGGGATGAGATGGACAGCTGGGCCGTGCTTCAGTCTCGCTTGATTTCGCAGTTCAGGAACGCCTCCTCCATCATCCAGAGGTTGCAGGTGCTTCAAGATTCCAAGAATTACGGCTGTTTGAAAGATGTTGTCAGCATTGAAGAGGCACTACTGGCAAAGCAAATGGACTCGTTGCAAAACATCTTGCTCTCCATGAAGAAAACCATGGAAGAGTTTCATGTTATTGTATTGTCTCTCGGGAAGATTCATCACGATGGTAGGCAGATGGCAAAAGGCGGTGGTTCTAGTCAGTTGAGTGTAAAACAACTGCAGCAACGAGTTGGTGTAAAACCCAGTCTTGCGGATTGCTTGGATGGGCTTATGCTTCTTCAGGACATGCATTGCTCTGAGTACCTTTTGAAGTCATCATTGGTTACAGCACTCTCACAACTTACCTTGAAACCCAGGTGTGCGAAGTACTTATCTTCTGACCGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

175

Amino Acids

19.74

Weight (kDa)

9.43

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	7 - 158	2.7e-48	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	2 cut(s)	321, 386
AcuI	CTGAAG	2 cut(s)	59, 398
AfaI	GTAC	2 cut(s)	437, 503
AgsI	TTSAA	5 cut(s)	140, 166, 185, 445, 484
AjnI	CCWGG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	84, 282
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	6, 66
ApeKI	GCWGC	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	25, 55
AvaI	CYCGRG	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	5 cut(s)	49, 122, 293, 304, 392
BceAI	ACGGC	2 cut(s)	53, 172
BciT130I	CCWGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	84, 282
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	490
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	9, 249, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse1I	ACTGG	2 cut(s)	201, 378
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	9, 249, 488
BseGI	GGATG	3 cut(s)	55, 117, 403
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	201, 378
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	8, 68
BsiHKCI	CYCGRG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	84, 282
BsnI	GGCC	2 cut(s)	8, 68
BsoBI	CYCGRG	1 cut(s)	281
Bsp19I	CCATGG	2 cut(s)	9, 249
BspACI	CCGC	2 cut(s)	321, 386
BspANI	GGCC	2 cut(s)	8, 68
BspCNI	CTCAG	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	201, 378
BssECI	CCNNGG	3 cut(s)	9, 249, 488
BssT1I	CCWWGG	2 cut(s)	9, 249
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	180, 249
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	2 cut(s)	9, 249
BstF5I	GGATG	3 cut(s)	55, 117, 403
BstMAI	GTCTC	2 cut(s)	84, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	8, 68
BtgI	CCRYGG	2 cut(s)	9, 249
BtsCI	GGATG	3 cut(s)	55, 117, 403
BveI	ACCTGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	436, 502
CviAII	CATG	5 cut(s)	10, 238, 250, 263, 421
CviJI	RGCY	5 cut(s)	8, 63, 68, 159, 403
CviKI_1	RGCY	5 cut(s)	8, 63, 68, 159, 403
CviQI	GTAC	2 cut(s)	436, 502
DdeI	CTNAG	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	180, 249
EarI	CTCTTC	2 cut(s)	180, 249
Eco130I	CCWWGG	2 cut(s)	9, 249
Eco57I	CTGAAG	2 cut(s)	59, 398
Eco88I	CYCGRG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	9, 249
EcoT22I	ATGCAT	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	9, 249
FaeI	CATG	5 cut(s)	13, 241, 253, 266, 424
FaiI	YATR	6 cut(s)	11, 239, 251, 264, 407, 422
FatI	CATG	5 cut(s)	9, 237, 249, 262, 420
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	3 cut(s)	62, 104, 410
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	8, 68
Hin1II	CATG	5 cut(s)	13, 241, 253, 266, 424
HinfI	GANTC	3 cut(s)	143, 212, 289
HphI	GGTGA	2 cut(s)	25, 55
Hpy188I	TCNGA	2 cut(s)	433, 514
Hpy188III	TCNNGA	7 cut(s)	37, 100, 121, 140, 283, 296, 416
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	4 cut(s)	130, 220, 355, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	13, 241, 253, 266, 424
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	457, 518
MboII	GAAGA	7 cut(s)	28, 197, 253, 266, 298, 404, 501
MluCI	AATT	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	6 cut(s)	24, 39, 117, 118, 121, 181
Mph1103I	ATGCAT	1 cut(s)	426
MroXI	GAANNNNTTC	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	2 cut(s)	9, 249
NlaIII	CATG	5 cut(s)	13, 241, 253, 266, 424
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	143, 289
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	2 cut(s)	437, 503
RsaNI	GTAC	2 cut(s)	436, 502
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	1 cut(s)	356
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	490
SetI	ASST	8 cut(s)	35, 45, 65, 128, 135, 441, 482, 494
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	321, 386
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	2 cut(s)	9, 249
TaaI	ACNGT	1 cut(s)	518
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	2 cut(s)	143, 289
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	251, 254, 281
XceI	RCATGY	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.