Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Forward (+)

54019045 .. 54021985

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1440200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGATGGAGGCGATGGTGAAGAGGTATCAGCAGAGGTTCAGGAAGGTGAAGGATGAGATGGATAGCTGGGCCCTGCTTCAGTCTCGCTTGATTTCGCAGTTCAGGAACGCCTCCTCCATCATCCAGAGGTTGCAGGTGCTTCAAGATTCCAAGAACTACGGCCGTTTGAAAGATGTCGTTGGTATTGAAGAGGCACTACTGGCAAAGCAGATGGAATCATTGCAAAACATCTTCCTTTCCATGAAGAAAACCATGGAAGAGTTTCATGCTATTGTACTGTCTCTTGGGAAGATCCATCGTGATGGTAGGCAGATGGTAAAAGGCGGTGCTTCTGGTCAGCTGAGTGTAAAACAACTGCAGCAACGAATTGGTGTAAAGCCCAGTCTTGCAGATTGCTTAGATGGGCTTATGCTTCTCCAGGACATGCATTGCTCTGAGTACCTTTTGAAGTCATCATTGGTTTCAGCACTGTCAGAACTGACCTTGAAACCCAGTGACAGTGATTTGGGTGCACTCCAGCAGCTCTTGGTTGATCAGCCTAACATCCCCAAGGAGGAAGTTCAATTCATCTTTGATATCATATTTGCAGAAGAAATCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

202

Amino Acids

22.79

Weight (kDa)

6.84

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	10 - 173	1.8e-51	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	279, 443
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	146, 172, 191, 451, 490, 566
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	3 cut(s)	69, 343, 526
AluI	AGCT	3 cut(s)	69, 343, 526
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	90, 288
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	2 cut(s)	72, 163
ApaI	GGGCCC	1 cut(s)	76
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	2 cut(s)	361, 523
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	72, 73
AsuHPI	GGTGA	2 cut(s)	31, 61
BaeGI	GKGCMC	2 cut(s)	76, 517
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	2 cut(s)	373, 535
BccI	CCATC	8 cut(s)	10, 55, 128, 208, 299, 306, 310, 398
BceAI	ACGGC	2 cut(s)	150, 178
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	90, 288
BfmI	CTRYAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	362, 524
BlsI	GCNGC	2 cut(s)	363, 525
Bme1390I	CCNGG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	72, 73
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	2 cut(s)	378, 489
BmuI	ACTGGG	2 cut(s)	378, 489
BpmI	CTGGAG	2 cut(s)	404, 503
BsaJI	CCNNGG	2 cut(s)	255, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	3 cut(s)	207, 384, 495
Bse3DI	GCAATG	2 cut(s)	221, 430
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	255, 552
BseGI	GGATG	4 cut(s)	12, 61, 123, 546
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMI	GCAATG	2 cut(s)	221, 430
BseMII	CTCAG	2 cut(s)	335, 429
BseNI	ACTGG	3 cut(s)	207, 384, 495
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	2 cut(s)	76, 517
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	373, 535
BseYI	CCCAGC	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	74, 165
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	2 cut(s)	90, 288
BsnI	GGCC	2 cut(s)	74, 165
Bsp120I	GGGCCC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	76, 517
Bsp143I	GATC	2 cut(s)	294, 535
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	74, 165
BspCNI	CTCAG	2 cut(s)	336, 430
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	289
BsrDI	GCAATG	2 cut(s)	221, 430
BsrI	ACTGG	3 cut(s)	207, 384, 495
BssECI	CCNNGG	2 cut(s)	255, 552
BssMI	GATC	2 cut(s)	294, 535
BssT1I	CCWWGG	2 cut(s)	255, 552
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	282, 474, 503
Bst6I	CTCTTC	3 cut(s)	17, 186, 255
BstDEI	CTNAG	3 cut(s)	344, 400, 438
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	4 cut(s)	12, 61, 123, 546
BstKTI	GATC	2 cut(s)	297, 538
BstMAI	GTCTC	2 cut(s)	90, 288
BstMBI	GATC	2 cut(s)	294, 535
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	359
BstSLI	GKGCMC	2 cut(s)	76, 517
BstV1I	GCAGC	2 cut(s)	373, 535
BstX2I	RGATCY	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	294
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	74, 165
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	12, 61, 123, 546
BtsIMutI	CAGTG	3 cut(s)	470, 502, 508
BveI	ACCTGC	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	72, 73
Csp6I	GTAC	2 cut(s)	278, 442
CviAII	CATG	4 cut(s)	244, 256, 269, 427
CviJI	RGCY	8 cut(s)	69, 74, 165, 343, 382, 409, 526, 541
CviKI_1	RGCY	8 cut(s)	69, 74, 165, 343, 382, 409, 526, 541
CviQI	GTAC	2 cut(s)	278, 442
DdeI	CTNAG	3 cut(s)	344, 400, 438
DpnI	GATC	2 cut(s)	296, 537
DpnII	GATC	2 cut(s)	294, 535
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	3 cut(s)	17, 186, 255
EarI	CTCTTC	3 cut(s)	17, 186, 255
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	255, 552
Eco24I	GRGCYC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	580
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	420
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	2 cut(s)	255, 552
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	255, 552
FaeI	CATG	4 cut(s)	247, 259, 272, 430
FaiI	YATR	6 cut(s)	245, 257, 270, 413, 428, 584
FatI	CATG	4 cut(s)	243, 255, 268, 426
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	362, 524
FokI	GGATG	4 cut(s)	19, 68, 110, 533
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	362, 524
GluI	GCNGC	2 cut(s)	362, 524
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	2 cut(s)	404, 503
HaeIII	GGCC	2 cut(s)	74, 165
Hin1II	CATG	4 cut(s)	247, 259, 272, 430
HinfI	GANTC	2 cut(s)	149, 218
HphI	GGTGA	2 cut(s)	31, 61
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	2 cut(s)	439, 478
Hpy188III	TCNNGA	5 cut(s)	43, 106, 127, 146, 302
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	2 cut(s)	40, 46
HpyCH4III	ACNGT	3 cut(s)	282, 474, 503
HpyCH4V	TGCA	7 cut(s)	136, 226, 361, 392, 430, 515, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	344, 400, 438
Hsp92II	CATG	4 cut(s)	247, 259, 272, 430
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	294, 535
Lsp1109I	GCAGC	2 cut(s)	373, 535
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	296, 537
MboI	GATC	2 cut(s)	294, 535
MboII	GAAGA	7 cut(s)	34, 203, 226, 259, 272, 304, 605
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	76, 517
MluCI	AATT	2 cut(s)	369, 566
MnlI	CCTC	8 cut(s)	4, 18, 30, 123, 124, 127, 187, 550
Mph1103I	ATGCAT	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	294, 535
NlaIII	CATG	4 cut(s)	247, 259, 272, 430
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	149, 218
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	363, 525
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	74
PspOMI	GGGCCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	72, 73
PstI	CTGCAG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	2 cut(s)	279, 443
RsaNI	GTAC	2 cut(s)	278, 442
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	2 cut(s)	362, 524
Sau3AI	GATC	2 cut(s)	294, 535
Sau96I	GGNCC	2 cut(s)	72, 73
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	2 cut(s)	76, 517
SfcI	CTRYAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	369, 566
SsiI	CCGC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	255, 552
TaaI	ACNGT	3 cut(s)	282, 474, 503
TasI	AATT	2 cut(s)	369, 566
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	149, 218
TscAI	CASTG	3 cut(s)	477, 502, 508
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	361, 523
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	257, 260, 559
TspRI	CASTG	3 cut(s)	477, 502, 508
VneI	GTGCAC	1 cut(s)	513
XceI	RCATGY	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.