Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Reverse (-)

36898792 .. 36902204

Gene Structure 3413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGAAGAAATACCAGCAGAGGTTCAGGAAGGTTAGGGACGAGATGGAGACCTGGGCCCAGCTTCAATCTCTCTTGATTTCCCAGTTCAGAGACGCCTCCTCCATCATCCTCAGGTTGCAGGTGCTTCAAGATTCAACCAACTACGGTGGTGGCGGCTTGAATGGAGTTCCCCATATTCAAGAGGCCGTGCTGGTCAAGCAGATGGAGTCATTGCAAAAACTCTTGCATTCCATGAACAACACCATGGAACAGTTTCATGGTATTGTGTTGTCTCTTGGGAGGATTCATCGTGATGGTAGGCAGATGGTAAAAGGTGGTTCTAGTCAGCTGAGTGTCAAACAACTGCAGCAGCGAGTTGGTGTGAAACCCAGTCTCGCCGATTGCTTAGATGGGCTCATGCTTCTTCAGGACATGCACTGCTCTGAGTACCTTTTAAAGTCATCATTGGTTTCAGCACTATCAGAACTTACTTTGAAACCCAGTGTCAGTGATCTGGGTTCCCTCCAGCAAATCTTGATTGATCAGCCGAACATTCCCAAGGAGGAAGTTCAATTCATCTTTGATATCATATTTGCTGAAGAAATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

198

Amino Acids

22.21

Weight (kDa)

6.51

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	4 - 167	1.3e-49	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	7 cut(s)	68, 131, 138, 163, 182, 478, 554
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	64, 331
AluI	AGCT	2 cut(s)	64, 331
Alw26I	GTCTC	4 cut(s)	44, 87, 279, 380
AoxI	GGCC	2 cut(s)	57, 186
ApaI	GGGCCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	349, 352
ApoI	RAATTY	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	57, 58
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	61, 399
BbvI	GCAGC	2 cut(s)	361, 364
BccI	CCATC	6 cut(s)	40, 113, 199, 290, 301, 386
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	55
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	4 cut(s)	44, 87, 279, 380
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	157, 350, 353
BlsI	GCNGC	3 cut(s)	158, 351, 354
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	57, 58
BmiI	GGNNCC	2 cut(s)	59, 502
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	3 cut(s)	79, 366, 477
BmuI	ACTGGG	3 cut(s)	79, 366, 477
BpmI	CTGGAG	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	54, 246, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	3 cut(s)	85, 372, 483
Bse21I	CCTNAGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	3 cut(s)	54, 246, 540
BseGI	GGATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	3 cut(s)	127, 323, 417
BseNI	ACTGG	3 cut(s)	85, 372, 483
BseRI	GAGGAG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	361, 364
BseYI	CCCAGC	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 188
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	4 cut(s)	44, 87, 279, 380
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	59, 188
Bso31I	GGTCTC	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	61, 399
Bsp143I	GATC	2 cut(s)	493, 523
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	59, 188
BspCNI	CTCAG	3 cut(s)	126, 324, 418
BspLI	GGNNCC	2 cut(s)	59, 502
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	85, 372, 483
BssECI	CCNNGG	3 cut(s)	54, 246, 540
BssMI	GATC	2 cut(s)	493, 523
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	246, 540
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	149, 255
BstACI	GRCGYC	1 cut(s)	96
BstDEI	CTNAG	4 cut(s)	113, 332, 388, 426
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	496, 526
BstMAI	GTCTC	4 cut(s)	44, 87, 279, 380
BstMBI	GATC	2 cut(s)	493, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	361, 364
Bsu36I	CCTNAGG	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	59, 188
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	418, 490, 496
BveI	ACCTGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	57, 58
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	5 cut(s)	235, 247, 260, 400, 415
CviJI	RGCY	7 cut(s)	59, 64, 159, 188, 331, 397, 529
CviKI_1	RGCY	7 cut(s)	59, 64, 159, 188, 331, 397, 529
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	113, 332, 388, 426
DpnI	GATC	2 cut(s)	495, 525
DpnII	GATC	2 cut(s)	493, 523
DraI	TTTAAA	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	246, 540
Eco24I	GRGCYC	2 cut(s)	61, 399
Eco31I	GGTCTC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	392
Eco81I	CCTNAGG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	2 cut(s)	246, 540
EcoT38I	GRGCYC	2 cut(s)	61, 399
ErhI	CCWWGG	2 cut(s)	246, 540
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	5 cut(s)	238, 250, 263, 403, 418
FaiI	YATR	7 cut(s)	177, 236, 248, 261, 401, 416, 572
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	5 cut(s)	234, 246, 259, 399, 414
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	157, 350, 353
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	2 cut(s)	61, 399
Fsp4HI	GCNGC	3 cut(s)	157, 350, 353
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	157, 350, 353
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	59, 188
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	238, 250, 263, 403, 418
HinfI	GANTC	3 cut(s)	134, 209, 286
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	92, 427, 466
Hpy188III	TCNNGA	7 cut(s)	28, 76, 131, 182, 293, 410, 517
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	149, 255
HpyCH4V	TGCA	5 cut(s)	121, 217, 229, 349, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	4 cut(s)	113, 332, 388, 426
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	238, 250, 263, 403, 418
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	493, 523
Lsp1109I	GCAGC	2 cut(s)	361, 364
MaeI	CTAG	1 cut(s)	324
MalI	GATC	2 cut(s)	495, 525
MboI	GATC	2 cut(s)	493, 523
MboII	GAAGA	3 cut(s)	19, 398, 593
MhlI	GDGCHC	2 cut(s)	61, 399
MluCI	AATT	2 cut(s)	554, 585
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	8 cut(s)	15, 109, 112, 122, 178, 276, 515, 538
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	2 cut(s)	493, 523
NlaIII	CATG	5 cut(s)	238, 250, 263, 403, 418
NlaIV	GGNNCC	2 cut(s)	59, 502
NspI	RCATGY	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	134, 286
PkrI	GCNGC	3 cut(s)	158, 351, 354
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	59, 502
PspOMI	GGGCCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	57, 58
PstI	CTGCAG	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	3 cut(s)	157, 350, 353
Sau3AI	GATC	2 cut(s)	493, 523
Sau96I	GGNCC	2 cut(s)	57, 58
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	61, 399
SetI	ASST	9 cut(s)	26, 36, 56, 66, 119, 126, 319, 333, 435
SfcI	CTRYAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	554, 585
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	246, 540
TaaI	ACNGT	2 cut(s)	149, 255
TasI	AATT	2 cut(s)	554, 585
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	134, 286
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	3 cut(s)	425, 490, 496
TseI	GCWGC	2 cut(s)	349, 352
TspDTI	ATGAA	4 cut(s)	248, 251, 278, 547
TspRI	CASTG	3 cut(s)	425, 490, 496
XapI	RAATTY	1 cut(s)	585
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.