Rmu_sc0000064.1_g000025

Casein Kinase 2 substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000064.1
OG0002014
Physical Location & Seq
Reverse (-)
148329 .. 152069
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000064.1_g000025.1.cds

Sequence Viewer

Length: 597 bp
atggaagtgatggtgaagaaataccagcataggttcaggaatgtgagggacgagatggattgttgggacaagcttcaagttctcttagtttctcagttcagaaacgcctccaccatcatccagaggttgcaggttcttcaagattccaaaaactatggtggcttgaatgaacttgttgatattcacgaggtggtcttggtgaagcagatggagtctttgcaaaaactcttgctttccatgaaaaataccatggaagaatttcactgcattgtaatgtctcttgggaggattcatcgtgatggtaggcacatgataaaaggtggttctagtcagctgagtacaaaacaactacagcagcgagttggtgtaaaacccactcttgcagattgcttagatgggcttttacttctccaggacatgcattgctctgagtaccttttgaagtcgtcattagtttcagctctatcagcgattacctttaaactgagtaccagtgatttgagttcgctgcagcaaatcttgattgatcagcctaacattccctgggaagaagttcaatttgtctttgatatcatatttgcacaagagaattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CK2S

Protein Analysis

198

Amino Acids

22.78

Weight (kDa)

6.3

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 3 cut(s) 340, 434, 490
AgsI TTSAA 5 cut(s) 77, 140, 166, 442, 557
AjnI CCWGG 2 cut(s) 411, 542
AluBI AGCT 3 cut(s) 73, 334, 461
AluI AGCT 3 cut(s) 73, 334, 461
Alw26I GTCTC 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 355, 508, 511
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 2 cut(s) 258, 552
AsuHPI GGTGA 2 cut(s) 25, 211
BauI CACGAG 1 cut(s) 185
BbvI GCAGC 3 cut(s) 367, 495, 523
BccI CCATC 6 cut(s) 4, 49, 122, 202, 293, 389
BciT130I CCWGG 2 cut(s) 413, 544
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 350, 509
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 356, 509, 512
BlsI GCNGC 3 cut(s) 357, 510, 513
Bme1390I CCNGG 2 cut(s) 413, 544
BmrFI CCNGG 2 cut(s) 413, 544
BpmI CTGGAG 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 249, 542, 543
Bse1I ACTGG 1 cut(s) 492
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 2 cut(s) 413, 544
BseDI CCNNGG 3 cut(s) 249, 542, 543
BseGI GGATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 4 cut(s) 107, 326, 420, 476
BseNI ACTGG 1 cut(s) 492
BseXI GCAGC 3 cut(s) 367, 495, 523
BslFI GGGAC 2 cut(s) 62, 80
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 62, 80
Bsp143I GATC 1 cut(s) 526
Bsp19I CCATGG 1 cut(s) 249
BspCNI CTCAG 4 cut(s) 106, 327, 421, 477
BspMAI CTGCAG 1 cut(s) 513
BspMI ACCTGC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 1 cut(s) 492
BssECI CCNNGG 3 cut(s) 249, 542, 543
BssMI GATC 1 cut(s) 526
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 413, 544
BstDEI CTNAG 6 cut(s) 85, 93, 335, 391, 429, 485
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 1 cut(s) 529
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNI CCWGG 2 cut(s) 413, 544
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 411, 542
BstSFI CTRYAG 2 cut(s) 350, 509
BstV1I GCAGC 3 cut(s) 367, 495, 523
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 262, 499
BveI ACCTGC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 339, 433, 489
CviAII CATG 4 cut(s) 238, 250, 310, 418
CviJI RGCY 6 cut(s) 73, 162, 334, 400, 461, 532
CviKI_1 RGCY 6 cut(s) 73, 162, 334, 400, 461, 532
CviQI GTAC 3 cut(s) 339, 433, 489
DdeI CTNAG 6 cut(s) 85, 93, 335, 391, 429, 485
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
DraI TTTAAA 1 cut(s) 481
DraIII CACNNNGTG 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 249
Eco32I GATATC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 411, 542
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 241, 253, 313, 421
FaiI YATR 7 cut(s) 30, 156, 239, 251, 311, 419, 575
FaqI GGGAC 2 cut(s) 62, 80
FatI CATG 4 cut(s) 237, 249, 309, 417
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 356, 509, 512
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 356, 509, 512
FspBI CTAG 1 cut(s) 327
GluI GCNGC 3 cut(s) 356, 509, 512
GsuI CTGGAG 1 cut(s) 395
Hin1II CATG 4 cut(s) 241, 253, 313, 421
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 3 cut(s) 143, 212, 289
HphI GGTGA 2 cut(s) 25, 211
Hpy188I TCNGA 2 cut(s) 101, 430
Hpy188III TCNNGA 6 cut(s) 37, 121, 140, 185, 296, 520
HpyCH4V TGCA 7 cut(s) 130, 220, 267, 383, 421, 511, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 6 cut(s) 85, 93, 335, 391, 429, 485
Hsp92II CATG 4 cut(s) 241, 253, 313, 421
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 1 cut(s) 526
LpnPI CCDG 9 cut(s) 22, 38, 116, 134, 398, 425, 505, 529, 556
Lsp1109I GCAGC 3 cut(s) 367, 495, 523
MaeI CTAG 1 cut(s) 327
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 4 cut(s) 28, 128, 266, 560
MluCI AATT 3 cut(s) 257, 557, 589
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 5 cut(s) 39, 117, 118, 181, 279
Mph1103I ATGCAT 1 cut(s) 423
MroXI GAANNNNTTC 2 cut(s) 258, 552
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 272, 297
MspA1I CMGCKG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 413, 544
MvaI CCWGG 2 cut(s) 413, 544
MwoI GCNNNNNNNGC 1 cut(s) 467
NcoI CCATGG 1 cut(s) 249
NdeII GATC 1 cut(s) 526
NlaIII CATG 4 cut(s) 241, 253, 313, 421
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 421
PasI CCCWGGG 1 cut(s) 543
PdmI GAANNNNTTC 2 cut(s) 258, 552
PfeI GAWTC 2 cut(s) 143, 289
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 3 cut(s) 357, 510, 513
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 411, 542
PspGI CCWGG 2 cut(s) 411, 542
PstI CTGCAG 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 3 cut(s) 340, 434, 490
RsaNI GTAC 3 cut(s) 339, 433, 489
RseI CAYNNNNRTG 2 cut(s) 272, 297
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 3 cut(s) 356, 509, 512
Sau3AI GATC 1 cut(s) 526
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 413, 544
SfcI CTRYAG 2 cut(s) 350, 509
SmiMI CAYNNNNRTG 2 cut(s) 272, 297
Sse9I AATT 3 cut(s) 257, 557, 589
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 411, 542
StyI CCWWGG 1 cut(s) 249
TasI AATT 3 cut(s) 257, 557, 589
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 2 cut(s) 143, 289
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 2 cut(s) 269, 499
TseI GCWGC 3 cut(s) 355, 508, 511
TspDTI ATGAA 3 cut(s) 183, 254, 281
TspRI CASTG 2 cut(s) 269, 499
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 258, 552
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.