Rorug03G0191700

Casein Kinase 2 substrate

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
16860133 .. 16861769
1637 bp
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UTR
Exon/CDS
Intron
Rorug03G0191700.1

Sequence Viewer

Length: 246 bp
ATGGAAAGGCTAAACTCGAAGCTGTACTTGCAGAATGTGTACATAATGAAAGAGAATGAGAGGCTGAGGAAGAAGGCACAGCTTCTGAACCAAGAGAATCAGGCCCTTCTTTCTGAGCTGAAGCAGAAGCTTTCAAAGCCAAACAAAGCCAATGGTGCTTCAAACACTGTGCCTGATCTGAATCTTAACCTGAGCTCCACCAACAACAACAACTCAAACAATCATCCTTCCAGTTCCAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.15

Weight (kDa)

9.82

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 26, 41
AgsI TTSAA 2 cut(s) 135, 162
AluBI AGCT 5 cut(s) 22, 82, 118, 130, 195
AluI AGCT 5 cut(s) 22, 82, 118, 130, 195
Alw21I GWGCWC 1 cut(s) 197
AlwNI CAGNNNCTG 2 cut(s) 85, 243
AoxI GGCC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 103
Bpu10I CCTNAGC 2 cut(s) 65, 191
BsaBI GATNNNNATC 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bse1I ACTGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 180
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 3 cut(s) 56, 105, 182
BseNI ACTGG 1 cut(s) 231
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 197
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 57, 106, 183
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 231
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 65, 114, 191
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 28, 136, 155
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 165
CaiI CAGNNNCTG 2 cut(s) 85, 243
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 25, 40
CviQI GTAC 2 cut(s) 25, 40
DdeI CTNAG 3 cut(s) 65, 114, 191
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 197
FaiI YATR 1 cut(s) 44
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 97, 181
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 87, 115, 180
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 67, 116, 237
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 136, 155
HpyF3I CTNAG 3 cut(s) 65, 114, 191
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 3 cut(s) 86, 186, 203
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 197
MnlI CCTC 2 cut(s) 54, 60
MseI TTAA 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 28, 136, 155
NdeII GATC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 97, 181
Psp124BI GAGCTC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 103
PstNI CAGNNNCTG 2 cut(s) 85, 243
RsaI GTAC 2 cut(s) 26, 41
RsaNI GTAC 2 cut(s) 25, 40
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 197
SetI ASST 6 cut(s) 24, 84, 120, 132, 192, 197
SgeI CNNG 6 cut(s) 28, 40, 104, 113, 185, 202
SstI GAGCTC 1 cut(s) 197
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 17
TatI WGTACW 2 cut(s) 24, 39
TfiI GAWTC 2 cut(s) 97, 181
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.