Rh3AG242600

Casein Kinase 2 substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002014
Physical Location & Seq
Reverse (-)
25519603 .. 25533997
14395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG242600.1

Sequence Viewer

Length: 666 bp
ATGATGCAAAAGAGGTCAATGCCTCCATTGAATATGGGCCAGCAGCAGCAGCAGCAAGTTCCAAAATCAGAACCAGTGCAAATCTCTGAGCCTCAGATTCTTCCAACGGGGGTGGACCCTGCTTTGTTGCAACAAGTTTTGAGCCTACCTCCCGAAACGGTGGCTTCATTGGCACCCGAACTGCGACAACAGGACAAGCTTCAAGTTCTCTTAGTTTCTCAGTTCAGAAACGCCTCCACCATCATCCAGAGGTTGCAGGTTCTTCAAGATTCCAAAAACTATGGTGGCTTGAATGAACTTGTTGATATTCAAGAGGTGGTCTTGGTGAAGCAGATGGAGTCTTTGCAAAAACTCTTGCTTTCCATGAAAAATACCATGGAAGAGTTTCACTGCATTGTAATGTCTCTTGGGAGGATTCATCGTGATGGTAGGCACATGATAAAAGGTGGTTCTAGTCAGCTGAGTACAAAACAACTACAGCAGCGAGTTGGTGTAAAACCCACTCTTGCAGATTGCTTAGATGGGCTTATGCTTCTCCAGGACATGCATTGCTCTGATACCAGTGATTTGAGTTCGCTGCAGCAAATCTTGATTGACCAGCCTAACATTCCCAGGGAAGAAGTTCAATTTGTCTTTGATATCATATTTGCACAAGAGAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CK2S

Protein Analysis

221

Amino Acids

24.91

Weight (kDa)

5.38

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CA109-like PF15011 57 - 190 6.6e-35 Ribosome biogenesis protein C1orf109-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 172
AfaI GTAC 1 cut(s) 466
AgsI TTSAA 6 cut(s) 31, 203, 266, 292, 311, 626
AjnI CCWGG 2 cut(s) 537, 611
AluBI AGCT 2 cut(s) 199, 460
AluI AGCT 2 cut(s) 199, 460
Alw26I GTCTC 1 cut(s) 408
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 7 cut(s) 43, 46, 49, 52, 481, 577, 580
Asp700I GAANNNNTTC 2 cut(s) 384, 621
AspS9I GGNCC 2 cut(s) 37, 115
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 172
BbvI GCAGC 7 cut(s) 55, 58, 61, 64, 493, 564, 592
BccI CCATC 4 cut(s) 248, 328, 419, 515
BciT130I CCWGG 2 cut(s) 539, 613
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 2 cut(s) 476, 578
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 7 cut(s) 44, 47, 50, 53, 482, 578, 581
BlsI GCNGC 7 cut(s) 45, 48, 51, 54, 483, 579, 582
Bme1390I CCNGG 2 cut(s) 539, 613
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 37, 115
BmiI GGNNCC 2 cut(s) 117, 174
BmrFI CCNGG 2 cut(s) 539, 613
BplI GAGNNNNNCTC 2 cut(s) 133, 165
BpmI CTGGAG 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 375, 611, 612
Bse1I ACTGG 2 cut(s) 74, 561
Bse3DI GCAATG 1 cut(s) 547
BseBI CCWGG 2 cut(s) 539, 613
BseDI CCNNGG 3 cut(s) 375, 611, 612
BseGI GGATG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 4 cut(s) 78, 107, 233, 452
BseNI ACTGG 2 cut(s) 74, 561
BseXI GCAGC 7 cut(s) 55, 58, 61, 64, 493, 564, 592
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 408
BsnI GGCC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 375
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 4 cut(s) 79, 106, 232, 453
BspLI GGNNCC 2 cut(s) 117, 174
BspMAI CTGCAG 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 2 cut(s) 74, 561
BssECI CCNNGG 3 cut(s) 375, 611, 612
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 539, 613
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 6 cut(s) 87, 93, 211, 219, 461, 517
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 408
BstMWI GCNNNNNNNGC 3 cut(s) 49, 52, 170
BstNI CCWGG 2 cut(s) 539, 613
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 537, 611
BstSFI CTRYAG 2 cut(s) 476, 578
BstV1I GCAGC 7 cut(s) 55, 58, 61, 64, 493, 564, 592
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 3 cut(s) 81, 388, 568
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 37, 115
Csp6I GTAC 1 cut(s) 465
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 4 cut(s) 364, 376, 436, 544
CviJI RGCY 9 cut(s) 39, 91, 144, 164, 199, 288, 460, 526, 601
CviKI_1 RGCY 9 cut(s) 39, 91, 144, 164, 199, 288, 460, 526, 601
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 6 cut(s) 87, 93, 211, 219, 461, 517
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 375
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 537, 611
EcoRV GATATC 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 375
EcoT22I ATGCAT 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 4 cut(s) 367, 379, 439, 547
FaiI YATR 8 cut(s) 35, 282, 365, 377, 437, 530, 545, 644
FatI CATG 4 cut(s) 363, 375, 435, 543
Fnu4HI GCNGC 7 cut(s) 44, 47, 50, 53, 482, 578, 581
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 7 cut(s) 44, 47, 50, 53, 482, 578, 581
FspBI CTAG 1 cut(s) 453
GluI GCNGC 7 cut(s) 44, 47, 50, 53, 482, 578, 581
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 1 cut(s) 39
Hin1II CATG 4 cut(s) 367, 379, 439, 547
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 97, 269, 338, 415
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 5 cut(s) 70, 88, 96, 227, 556
Hpy188III TCNNGA 6 cut(s) 152, 247, 266, 311, 422, 589
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 52, 170
HpyF3I CTNAG 6 cut(s) 87, 93, 211, 219, 461, 517
Hsp92II CATG 4 cut(s) 367, 379, 439, 547
Lsp1109I GCAGC 7 cut(s) 55, 58, 61, 64, 493, 564, 592
MaeI CTAG 1 cut(s) 453
MboII GAAGA 4 cut(s) 92, 254, 392, 629
MluCI AATT 2 cut(s) 626, 658
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 8 cut(s) 6, 33, 102, 159, 243, 244, 307, 405
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 2 cut(s) 384, 621
MslI CAYNNNNRTG 2 cut(s) 398, 423
MspA1I CMGCKG 1 cut(s) 460
MspR9I CCNGG 2 cut(s) 539, 613
MvaI CCWGG 2 cut(s) 539, 613
MwoI GCNNNNNNNGC 3 cut(s) 49, 52, 170
NcoI CCATGG 1 cut(s) 375
NlaIII CATG 4 cut(s) 367, 379, 439, 547
NlaIV GGNNCC 2 cut(s) 117, 174
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 1 cut(s) 547
PasI CCCWGGG 1 cut(s) 612
PdmI GAANNNNTTC 2 cut(s) 384, 621
PfeI GAWTC 3 cut(s) 97, 269, 415
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 7 cut(s) 45, 48, 51, 54, 483, 579, 582
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 537, 611
PspGI CCWGG 2 cut(s) 537, 611
PspN4I GGNNCC 2 cut(s) 117, 174
PspPI GGNCC 2 cut(s) 37, 115
PstI CTGCAG 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 2 cut(s) 398, 423
SatI GCNGC 7 cut(s) 44, 47, 50, 53, 482, 578, 581
Sau96I GGNCC 2 cut(s) 37, 115
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 539, 613
SetI ASST 8 cut(s) 17, 151, 201, 254, 261, 318, 448, 462
SfcI CTRYAG 2 cut(s) 476, 578
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 398, 423
Sse9I AATT 2 cut(s) 626, 658
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 537, 611
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 160
TasI AATT 2 cut(s) 626, 658
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 3 cut(s) 97, 269, 415
TscAI CASTG 3 cut(s) 81, 395, 568
TseI GCWGC 7 cut(s) 43, 46, 49, 52, 481, 577, 580
TspDTI ATGAA 4 cut(s) 156, 309, 380, 407
TspRI CASTG 3 cut(s) 81, 395, 568
VpaK11BI GGWCC 1 cut(s) 115
XceI RCATGY 1 cut(s) 547
XmnI GAANNNNTTC 2 cut(s) 384, 621
XspI CTAG 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.