Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002014

Physical Location & Seq

Genomic Coordinates Reverse (-)

27075200 .. 27082208

Gene Structure 7009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG272600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGTGATGGTGAAGAAATACCAGCATAGGTTCAGGAATGTGAGGGACGAGATGGATTGTTGGGACAAGCTTCAAGTTCTCTTAGTTTCTCAGTTCAGAAACGCCTCCACCATCATCCAGAGGTTGCAGGTTCTTCAAGATTCCAAAAACTATGGTGGCTTGAATGAACTTGTTGATATTCAAGAGGTGGTCTTGGTGAAGCAGATGGAGTCTTTGCAAAAACTCTTGCTTTCCATGAAAAATACCATGGAAGAATTTCACTGCATTGTAATGTCTCTTGGGAGGATTCATCGTGATGATTGCTTAGATGGGCTTTTGCTTCTCCAGGACATGCATTGCTCTGAGTACCTTTTGAAGTCGTCATTAGTTTCAGCTCTATCAGCGATTACCTTTAAACTGAGTACCAGTGATTTGAGTTCGCTGCAGCAAATCTTGATTGATCAGCCTAACATTCCCAGGGAAGAAGGTCTCCATCTCAAAGGTGCATTCACTTGCGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CK2S

Protein Analysis

168

Amino Acids

19.26

Weight (kDa)

5.94

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CA109-like	PF15011	7 - 100	1.6e-25	Ribosome biogenesis protein C1orf109-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43822
fragaria_vesca	FvH4_5g25620 FvH4_5g25620
malus_domestica	MD08G1245100.v1.1 MD15G1440200.v1.1
prunus_persica	Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1 Prupe.5G009200_v2.0.a1
pyrus_communis	pycom08g21270 pycom15g38810
rosa_chinensis	RchiOBHm_Chr3g0481381 RchiOBHm_Chr3g0481391 RchiOBHm_Chr7g0215911
rosa_laevigata	RLG00000002608 RLG00000023401
rosa_multiflora	Rmu_sc0000064.1_g000025 Rmu_sc0006240.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243810
rosa_rugosa	Rorug03G0191700 Rorug07G0156800
rosa_samantha	Rh3AG242600 Rh3BG277600 Rh3CG272600 Rh3DG269600 Rh7AG294800 Rh7BG286800 Rh7CG314900 Rh7DG297600
rosa_wichuraiana	Rw3G021680 Rw7G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	2 cut(s)	350, 406
AgsI	TTSAA	5 cut(s)	77, 140, 166, 185, 358
AjnI	CCWGG	2 cut(s)	327, 458
AluBI	AGCT	2 cut(s)	73, 377
AluI	AGCT	2 cut(s)	73, 377
Alw26I	GTCTC	2 cut(s)	282, 476
ApeKI	GCWGC	2 cut(s)	424, 427
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	25, 211
BbvI	GCAGC	2 cut(s)	411, 439
BccI	CCATC	6 cut(s)	4, 49, 122, 202, 305, 483
BciT130I	CCWGG	2 cut(s)	329, 460
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	282, 476
BfmI	CTRYAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	425, 428
BlsI	GCNGC	2 cut(s)	426, 429
Bme1390I	CCNGG	2 cut(s)	329, 460
BmrFI	CCNGG	2 cut(s)	329, 460
BpmI	CTGGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	249, 458, 459
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	2 cut(s)	329, 460
BseDI	CCNNGG	3 cut(s)	249, 458, 459
BseGI	GGATG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	3 cut(s)	107, 336, 392
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	411, 439
BslFI	GGGAC	2 cut(s)	62, 80
BsmAI	GTCTC	2 cut(s)	282, 476
BsmFI	GGGAC	2 cut(s)	62, 80
BsmI	GAATGC	1 cut(s)	488
Bso31I	GGTCTC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	498
BspCNI	CTCAG	3 cut(s)	106, 337, 393
BspMAI	CTGCAG	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	249, 458, 459
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	329, 460
BstDEI	CTNAG	5 cut(s)	85, 93, 307, 345, 401
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	2 cut(s)	282, 476
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	2 cut(s)	329, 460
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	327, 458
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	411, 439
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 415
BveI	ACCTGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	349, 405
CviAII	CATG	4 cut(s)	238, 250, 334, 504
CviJI	RGCY	5 cut(s)	73, 162, 316, 377, 448
CviKI_1	RGCY	5 cut(s)	73, 162, 316, 377, 448
CviQI	GTAC	2 cut(s)	349, 405
DdeI	CTNAG	5 cut(s)	85, 93, 307, 345, 401
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraI	TTTAAA	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	327, 458
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	241, 253, 337, 507
FaiI	YATR	6 cut(s)	30, 156, 239, 251, 335, 505
FaqI	GGGAC	2 cut(s)	62, 80
FatI	CATG	4 cut(s)	237, 249, 333, 503
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	425, 428
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	425, 428
GluI	GCNGC	2 cut(s)	425, 428
GsuI	CTGGAG	1 cut(s)	311
Hin1II	CATG	4 cut(s)	241, 253, 337, 507
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	143, 212, 289
HphI	GGTGA	2 cut(s)	25, 211
Hpy188I	TCNGA	2 cut(s)	101, 346
Hpy188III	TCNNGA	6 cut(s)	37, 121, 140, 185, 296, 436
HpyAV	CCTTC	1 cut(s)	461
HpyCH4V	TGCA	7 cut(s)	130, 220, 267, 337, 427, 488, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	5 cut(s)	85, 93, 307, 345, 401
Hsp92II	CATG	4 cut(s)	241, 253, 337, 507
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	442
LpnPI	CCDG	9 cut(s)	22, 38, 116, 134, 314, 341, 421, 445, 472
Lsp1109I	GCAGC	2 cut(s)	411, 439
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	4 cut(s)	28, 128, 266, 476
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	39, 117, 118, 181, 279
Mph1103I	ATGCAT	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	272, 297
MspR9I	CCNGG	2 cut(s)	329, 460
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	329, 460
MwoI	GCNNNNNNNGC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	4 cut(s)	241, 253, 337, 507
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	1 cut(s)	337
PasI	CCCWGGG	1 cut(s)	459
PctI	GAATGC	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	143, 289
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	426, 429
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	327, 458
PspGI	CCWGG	2 cut(s)	327, 458
PstI	CTGCAG	1 cut(s)	429
RsaI	GTAC	2 cut(s)	350, 406
RsaNI	GTAC	2 cut(s)	349, 405
RseI	CAYNNNNRTG	2 cut(s)	272, 297
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	425, 428
Sau3AI	GATC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	329, 460
SfcI	CTRYAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	272, 297
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	327, 458
StyI	CCWWGG	1 cut(s)	249
TasI	AATT	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	143, 289
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	2 cut(s)	269, 415
TseI	GCWGC	2 cut(s)	424, 427
TspDTI	ATGAA	3 cut(s)	183, 254, 281
TspRI	CASTG	2 cut(s)	269, 415
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.