Rh3DG269600

Casein Kinase 2 substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002014
Physical Location & Seq
Reverse (-)
26984370 .. 26988037
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG269600.1

Sequence Viewer

Length: 543 bp
ATGGAAGTGATGGTGAAGAAATACCAGCATAGGTTCAGGAATGTGAGGGACGAGATGGATTGTTGGGACAAGCTTCAAGTTCTCTTAGTTTCTCAGTTCAGAAACGCCTCCACCATCATCCAGAGGTTGCAGGTTCTTCAAGATTCCAAAAACTATGGTGGCTTGAATGAACTTGTTGATATTCAAGAGGTGGTCTTGGTGAAGCAGATGGAGTCTTTGCAAAAACTCTTGCTTTCCATGAAAAATACCATGCACATGATAAAAGGTGGTTCTAGTCAGCTGAGTACAAAACAACTACAGCAGCGAGTTGGTGTAAAACCCACTCTTGCAGATTGCTTAGATGGGCTTTTGCTTCTCCAGGACATGCATTGCTCTGAGTACCTTTTGAAGTCGTCATTAGTTTCAGCTCTATCAGCGATTACCTTTAAACTGAGTACCAGTGATTTGAGTTCGCTGCAGCAAATCTTGATTGATCAGCCTAACATTCCCTGGGAAGAAGTTCAATTTGTCTTTGATATCATATTTGCACAAGAGAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CK2S

Protein Analysis

180

Amino Acids

20.64

Weight (kDa)

5.91

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CA109-like PF15011 7 - 87 1.3e-20 Ribosome biogenesis protein C1orf109-like
CA109-like PF15011 82 - 154 5.5e-16 Ribosome biogenesis protein C1orf109-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AfaI GTAC 3 cut(s) 286, 380, 436
AgsI TTSAA 6 cut(s) 77, 140, 166, 185, 388, 503
AjnI CCWGG 2 cut(s) 357, 488
AluBI AGCT 3 cut(s) 73, 280, 407
AluI AGCT 3 cut(s) 73, 280, 407
ApeKI GCWGC 3 cut(s) 301, 454, 457
Asp700I GAANNNNTTC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 25, 211
BbvI GCAGC 3 cut(s) 313, 441, 469
BccI CCATC 5 cut(s) 4, 49, 122, 202, 335
BciT130I CCWGG 2 cut(s) 359, 490
BclI TGATCA 1 cut(s) 472
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 2 cut(s) 296, 455
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 302, 455, 458
BlsI GCNGC 3 cut(s) 303, 456, 459
Bme1390I CCNGG 2 cut(s) 359, 490
BmrFI CCNGG 2 cut(s) 359, 490
BpmI CTGGAG 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 488, 489
Bse1I ACTGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 359, 490
BseDI CCNNGG 2 cut(s) 488, 489
BseGI GGATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 4 cut(s) 107, 272, 366, 422
BseNI ACTGG 1 cut(s) 438
BseXI GCAGC 3 cut(s) 313, 441, 469
BslFI GGGAC 2 cut(s) 62, 80
BsmFI GGGAC 2 cut(s) 62, 80
Bsp143I GATC 1 cut(s) 472
BspCNI CTCAG 4 cut(s) 106, 273, 367, 423
BspMAI CTGCAG 1 cut(s) 459
BspMI ACCTGC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 488, 489
BssMI GATC 1 cut(s) 472
Bst2UI CCWGG 2 cut(s) 359, 490
BstDEI CTNAG 6 cut(s) 85, 93, 281, 337, 375, 431
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 359, 490
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 357, 488
BstSFI CTRYAG 2 cut(s) 296, 455
BstV1I GCAGC 3 cut(s) 313, 441, 469
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 285, 379, 435
CviAII CATG 4 cut(s) 238, 250, 256, 364
CviJI RGCY 6 cut(s) 73, 162, 280, 346, 407, 478
CviKI_1 RGCY 6 cut(s) 73, 162, 280, 346, 407, 478
CviQI GTAC 3 cut(s) 285, 379, 435
DdeI CTNAG 6 cut(s) 85, 93, 281, 337, 375, 431
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraI TTTAAA 1 cut(s) 427
Eco32I GATATC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 357, 488
EcoRV GATATC 1 cut(s) 517
EcoT22I ATGCAT 1 cut(s) 369
FaeI CATG 4 cut(s) 241, 253, 259, 367
FaiI YATR 7 cut(s) 30, 156, 239, 251, 257, 365, 521
FaqI GGGAC 2 cut(s) 62, 80
FatI CATG 4 cut(s) 237, 249, 255, 363
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 302, 455, 458
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 302, 455, 458
FspBI CTAG 1 cut(s) 273
GluI GCNGC 3 cut(s) 302, 455, 458
GsuI CTGGAG 1 cut(s) 341
Hin1II CATG 4 cut(s) 241, 253, 259, 367
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 143, 212
HphI GGTGA 2 cut(s) 25, 211
Hpy188I TCNGA 2 cut(s) 101, 376
Hpy188III TCNNGA 5 cut(s) 37, 121, 140, 185, 466
HpyCH4V TGCA 7 cut(s) 130, 220, 253, 329, 367, 457, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 6 cut(s) 85, 93, 281, 337, 375, 431
Hsp92II CATG 4 cut(s) 241, 253, 259, 367
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 1 cut(s) 472
LpnPI CCDG 9 cut(s) 22, 38, 116, 134, 344, 371, 451, 475, 502
Lsp1109I GCAGC 3 cut(s) 313, 441, 469
MaeI CTAG 1 cut(s) 273
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 3 cut(s) 28, 128, 506
MluCI AATT 2 cut(s) 503, 535
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 39, 117, 118, 181
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 280
MspR9I CCNGG 2 cut(s) 359, 490
MvaI CCWGG 2 cut(s) 359, 490
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 1 cut(s) 472
NlaIII CATG 4 cut(s) 241, 253, 259, 367
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 367
PasI CCCWGGG 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 3 cut(s) 303, 456, 459
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 357, 488
PspGI CCWGG 2 cut(s) 357, 488
PstI CTGCAG 1 cut(s) 459
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 3 cut(s) 286, 380, 436
RsaNI GTAC 3 cut(s) 285, 379, 435
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 3 cut(s) 302, 455, 458
Sau3AI GATC 1 cut(s) 472
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 359, 490
SfcI CTRYAG 2 cut(s) 296, 455
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 2 cut(s) 503, 535
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 357, 488
TasI AATT 2 cut(s) 503, 535
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 445
TseI GCWGC 3 cut(s) 301, 454, 457
TspDTI ATGAA 2 cut(s) 183, 254
TspRI CASTG 1 cut(s) 445
XceI RCATGY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.