AT5G46930

invertase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002424
Physical Location & Seq
Reverse (-)
19056505 .. 19057243
739 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46930.1

Sequence Viewer

Length: 537 bp
ATGAAATTCTCGCTTTACCTTGTTATGTTCTTTCTCCTCTTAAACTGTTTCGCAACCGCACAATCTCTGATTCGGGATTCTTGCAAAAAAGCTACAACTAAAGACCCGAAACTCAAATATGATTTTTGCGTCAAGTCTCTCGAAGAGAATCCGCAGAGCAAAACCGCAAAGAGTCTTGAAGGTTTGGTCTTCGTATCGACCAAGAACGCTGTTTCGAAAACGACTAGCTTGAAAGGAATGGTTGACAAGATTCTCAAGGAGGATAAATATGAAGTGGAGAGGCCGTTACTTGATTGCCTCGAACTTTATACCGAAGCTATTGATTCCTTAAACCAATCTTTAGACACTGTTAAGTCGCGTGATTACAAAACAGCTACCATGCTTATGAGTGCTGCAATGGATGCACCGGGAAGTTGCGAAACTAAATTCACAAAAAGAAAAAAGGCTGTGAAATCTCCATTTACGAAAGAGAACGATGTCTTGTTTTACATGGTTCTGATTCCTATAGCTTTTACAAGTATGTTAGATATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

178

Amino Acids

20.16

Weight (kDa)

8.97

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 22 - 165 7.7e-27 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 358
AciI CCGC 3 cut(s) 57, 152, 165
AcsI RAATTY 2 cut(s) 5, 425
AgsI TTSAA 2 cut(s) 179, 232
AluBI AGCT 5 cut(s) 92, 228, 317, 374, 509
AluI AGCT 5 cut(s) 92, 228, 317, 374, 509
Alw26I GTCTC 1 cut(s) 141
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 2 cut(s) 5, 425
AsuC2I CCSGG 1 cut(s) 408
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 379
BceAI ACGGC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bse3DI GCAATG 1 cut(s) 402
BseGI GGATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 215
BspACI CCGC 3 cut(s) 57, 152, 165
BspANI GGCC 1 cut(s) 283
BspFNI CGCG 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 47, 349
Bst6I CTCTTC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 215
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 345
CseI GACGC 1 cut(s) 118
CviAII CATG 2 cut(s) 379, 490
CviJI RGCY 7 cut(s) 92, 228, 283, 317, 374, 446, 509
CviKI_1 RGCY 7 cut(s) 92, 228, 283, 317, 374, 446, 509
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
FaeI CATG 2 cut(s) 382, 493
FatI CATG 2 cut(s) 378, 489
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 1 cut(s) 225
GluI GCNGC 1 cut(s) 393
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 407
HgaI GACGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 382, 493
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 7 cut(s) 70, 77, 148, 172, 250, 323, 499
HpaII CCGG 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 69, 498
Hpy188III TCNNGA 3 cut(s) 74, 140, 176
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 47, 349
HpyCH4V TGCA 3 cut(s) 84, 395, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
Hsp92II CATG 2 cut(s) 382, 493
LpnPI CCDG 1 cut(s) 420
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 285
MboII GAAGA 2 cut(s) 155, 181
MluCI AATT 2 cut(s) 5, 425
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 4 cut(s) 47, 253, 273, 308
MseI TTAA 3 cut(s) 41, 329, 351
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 408
NlaIII CATG 2 cut(s) 382, 493
NspV TTCGAA 1 cut(s) 215
PfeI GAWTC 6 cut(s) 70, 77, 148, 250, 323, 499
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 3 cut(s) 41, 329, 351
SatI GCNGC 1 cut(s) 393
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 408
SetI ASST 7 cut(s) 21, 94, 184, 230, 319, 376, 511
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 5, 425
SsiI CCGC 3 cut(s) 57, 152, 165
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 47, 349
TaqI TCGA 4 cut(s) 141, 197, 215, 300
TasI AATT 2 cut(s) 5, 425
TfiI GAWTC 6 cut(s) 70, 77, 148, 250, 323, 499
Tru1I TTAA 3 cut(s) 41, 329, 351
Tru9I TTAA 3 cut(s) 41, 329, 351
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 17, 285
TspRI CASTG 1 cut(s) 352
XapI RAATTY 2 cut(s) 5, 425
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.