AT5G46970

invertase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002424
Physical Location & Seq
Reverse (-)
19063755 .. 19064418
664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46970.1

Sequence Viewer

Length: 495 bp
ATGACGTTCTTGTTCTATTTTGCTATGTTCTTTCTGCTCTTAAACGCTTTCACAATTGCACAATCTTTGATCCAAGATTTTTGCAAGAAAGCTGCAGATAAAAACCCGAAGATTCATTACAACTTCTGTGTCAAGTCTCTCGAAGAGAATCCACAGAGCAAAACTGCACGTAGTCTTGACAGGTTGGTCATGTTATCCACGAAAAACGCAGTGTCGAAAACAACAAGCATGAAAGGAATTGTGGACAAGATTCTCAAGGAGAATAGATTTGAAATGTATAGTGAGAAACCATTACGTGATTGCCTCGAACTTTATTCGGATGCTACAAATTCCTTAAAGGAAGCTCTAACGATCATTAAGTCGCGTGATTATAAAACCGCTAACGTGGTTATAAGTGCTGCAATGGGTGCACCACCTAGTTGCGAAATTGGATTCAAAGAAGGAAAAAAACCTCTCAAATCTCCATTTACAAAAGATAACGATGTTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

164

Amino Acids

18.59

Weight (kDa)

9.21

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 22 - 158 1.2e-24 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 372, 392
AasI GACNNNNNNGTC 1 cut(s) 185
AccII CGCG 1 cut(s) 364
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 328
AgsI TTSAA 2 cut(s) 272, 436
AluBI AGCT 2 cut(s) 92, 344
AluI AGCT 2 cut(s) 92, 344
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 1 cut(s) 64
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 92, 398
ApoI RAATTY 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 412
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 79, 385
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 93, 399
BlsI GCNGC 2 cut(s) 94, 400
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 239
BsaAI YACGTR 2 cut(s) 170, 296
Bse3DI GCAATG 1 cut(s) 408
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 2 cut(s) 79, 385
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 69, 351
BspACI CCGC 1 cut(s) 378
BspFNI CGCG 1 cut(s) 364
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 408
BssMI GATC 2 cut(s) 69, 351
Bst6I CTCTTC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBAI YACGTR 2 cut(s) 170, 296
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 364
BstKTI GATC 2 cut(s) 72, 354
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 69, 351
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 79, 385
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
CviAII CATG 2 cut(s) 190, 229
CviJI RGCY 2 cut(s) 92, 344
CviKI_1 RGCY 2 cut(s) 92, 344
DpnI GATC 2 cut(s) 71, 353
DpnII GATC 2 cut(s) 69, 351
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
FaeI CATG 2 cut(s) 193, 232
FaiI YATR 6 cut(s) 26, 191, 230, 279, 372, 392
FatI CATG 2 cut(s) 189, 228
Fnu4HI GCNGC 2 cut(s) 93, 399
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 2 cut(s) 93, 399
FspBI CTAG 1 cut(s) 417
GluI GCNGC 2 cut(s) 93, 399
Hin1II CATG 2 cut(s) 193, 232
HinfI GANTC 4 cut(s) 112, 148, 250, 432
Hpy166II GTNNAC 2 cut(s) 244, 410
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 140, 176
Hpy8I GTNNAC 2 cut(s) 244, 410
HpyAV CCTTC 1 cut(s) 434
HpyCH4IV ACGT 4 cut(s) 5, 169, 295, 384
HpyCH4V TGCA 6 cut(s) 59, 84, 95, 167, 401, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpySE526I ACGT 4 cut(s) 5, 169, 295, 384
Hsp92II CATG 2 cut(s) 193, 232
Kzo9I GATC 2 cut(s) 69, 351
LpnPI CCDG 1 cut(s) 166
Lsp1109I GCAGC 2 cut(s) 79, 385
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 417
MaeII ACGT 4 cut(s) 5, 169, 295, 384
MalI GATC 2 cut(s) 71, 353
MboI GATC 2 cut(s) 69, 351
MboII GAAGA 2 cut(s) 121, 155
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 54, 237, 328, 426
MnlI CCTC 2 cut(s) 314, 462
MseI TTAA 4 cut(s) 41, 335, 357, 493
MunI CAATTG 1 cut(s) 54
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 2 cut(s) 69, 351
NlaIII CATG 2 cut(s) 193, 232
PfeI GAWTC 4 cut(s) 112, 148, 250, 432
PkrI GCNGC 2 cut(s) 94, 400
Ppu21I YACGTR 2 cut(s) 170, 296
PsiI TTATAA 2 cut(s) 372, 392
PstI CTGCAG 1 cut(s) 97
SaqAI TTAA 4 cut(s) 41, 335, 357, 493
SatI GCNGC 2 cut(s) 93, 399
Sau3AI GATC 2 cut(s) 69, 351
SduI GDGCHC 1 cut(s) 412
SetI ASST 9 cut(s) 8, 94, 172, 185, 298, 346, 387, 418, 454
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 54, 237, 328, 426
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 417
TaiI ACGT 4 cut(s) 8, 172, 298, 387
TaqI TCGA 3 cut(s) 141, 215, 306
TasI AATT 4 cut(s) 54, 237, 328, 426
TfiI GAWTC 4 cut(s) 112, 148, 250, 432
Tru1I TTAA 4 cut(s) 41, 335, 357, 493
Tru9I TTAA 4 cut(s) 41, 335, 357, 493
TscAI CASTG 1 cut(s) 216
TseI GCWGC 2 cut(s) 92, 398
TspDTI ATGAA 2 cut(s) 104, 245
TspRI CASTG 1 cut(s) 216
VneI GTGCAC 1 cut(s) 408
XapI RAATTY 1 cut(s) 328
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.