Rorug07G0105600

Invertase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002424
Physical Location & Seq
Reverse (-)
8278990 .. 8282282
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0105600.1

Sequence Viewer

Length: 879 bp
ATGGGTGGTAAAAAGGAATCTTCTTCTTCTTCTTCTTCTCCGAGTTTATGGCTGGCTTCCAATCCAAGCAAGCGATGGGGGGAGCTCTTCTTTCTCTTCTACACTCCTTTCTGGCTCACTCTCTGCCTCGGAATCGTCGTCCCCTACAAGCTCTACGAGAGGTTTACGGAATGGGAGTATTTGCTAATTGGATTGGTCTCGGCTGTTCCTTCGTTTTTGTTACCCATGTTATTCGTGGGAAAGGCAGATAGAAGCTTGTGTTGGAAGGATCGGTATTGGGTCAAGGCCAGTGTGTGGACAATACTTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACGGTTTTGGGAGCTTCGTATACTTTCCCGTCATGGAAAATGAACAATGTACCACATACTACCTTCCTTCTCACACATGTTTGCTTCCTATTTTATCATGTCGGATCAAACATGACGCTTCGCAGACTACGCCATTCTATTGCTGACATGCCAAAACAAGTTCAATTGCTTTTTGAGGCTGCATGGATATTGGCTTTTGCTTATTTCATAGCATACCTGGAGACTGTAGCTATTTCCAACTTCCCTTATTATGAATTTGTCGACCGGGCGATTATGTACAAAGTTGGGTGCTTGTTTTATGCCATCTACTTCATTGTTAGCTTTCCCATGTTTCTTAGGATTGACGAGAAACCTGGTGATGCATGGGACTTGCCAAGAGCCGCCATTGATGCTCTGGGTGCTGCAATGCTGGTGACGATAATACTAGATCTGTGGCGCATATTTCTGGGACCTATTGTTCTGATTCCAGAAACTAAACAGTGCATTCAACCCGGACTACCATGGTTCCCTGGACATGACAACTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

292

Amino Acids

33.91

Weight (kDa)

8.49

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AccI GTMKAC 2 cut(s) 368, 609
AciI CCGC 1 cut(s) 729
AclWI GGATC 2 cut(s) 276, 460
AcsI RAATTY 1 cut(s) 602
AfaI GTAC 2 cut(s) 399, 626
AfiI CCNNNNNNNGG 1 cut(s) 294
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 2 cut(s) 512, 836
AjnI CCWGG 3 cut(s) 564, 700, 856
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AloI GAACNNNNNNTCC 2 cut(s) 789, 821
AluBI AGCT 7 cut(s) 85, 151, 255, 312, 362, 578, 669
AluI AGCT 7 cut(s) 85, 151, 255, 312, 362, 578, 669
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 202, 563
AlwI GGATC 2 cut(s) 276, 460
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 527, 749
ApoI RAATTY 1 cut(s) 602
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 2 cut(s) 333, 797
AsuC2I CCSGG 2 cut(s) 614, 840
AsuHPI GGTGA 2 cut(s) 716, 772
AvaII GGWCC 2 cut(s) 333, 797
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 514, 736
BccI CCATC 2 cut(s) 69, 659
BciT130I CCWGG 3 cut(s) 566, 702, 858
BcnI CCSGG 2 cut(s) 614, 840
BcoDI GTCTC 2 cut(s) 202, 563
BfaI CTAG 1 cut(s) 773
BfmI CTRYAG 1 cut(s) 573
BglII AGATCT 1 cut(s) 775
BisI GCNGC 3 cut(s) 528, 729, 750
BlsI GCNGC 3 cut(s) 529, 730, 751
Bme1390I CCNGG 5 cut(s) 566, 614, 702, 840, 858
Bme18I GGWCC 2 cut(s) 333, 797
BmgT120I GGNCC 2 cut(s) 333, 797
BmiI GGNNCC 3 cut(s) 335, 798, 854
BmrFI CCNGG 5 cut(s) 566, 614, 702, 840, 858
BmsI GCATC 2 cut(s) 697, 727
BpmI CTGGAG 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 614, 840
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 127, 848, 856
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 3 cut(s) 566, 702, 858
BseDI CCNNGG 3 cut(s) 127, 848, 856
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 759
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 2 cut(s) 514, 736
Bsh1285I CGRYCG 1 cut(s) 613
BshFI GGCC 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 2 cut(s) 613, 840
BslFI GGGAC 3 cut(s) 125, 728, 810
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 202, 563
BsmFI GGGAC 3 cut(s) 125, 728, 810
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 3 cut(s) 268, 452, 775
Bsp19I CCATGG 1 cut(s) 848
BspACI CCGC 1 cut(s) 729
BspANI GGCC 1 cut(s) 287
BspLI GGNNCC 3 cut(s) 335, 798, 854
BspPI GGATC 2 cut(s) 276, 460
BspQI GCTCTTC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 759
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 127, 848, 856
BssMI GATC 3 cut(s) 268, 452, 775
BssNAI GTATAC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 848
Bst1107I GTATAC 1 cut(s) 369
Bst2UI CCWGG 3 cut(s) 566, 702, 858
Bst4CI ACNGT 3 cut(s) 352, 574, 828
Bst6I CTCTTC 2 cut(s) 92, 101
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 54, 71
BstDEI CTNAG 1 cut(s) 683
BstDSI CCRYGG 1 cut(s) 848
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 3 cut(s) 271, 455, 778
BstMAI GTCTC 2 cut(s) 202, 563
BstMBI GATC 3 cut(s) 268, 452, 775
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 3 cut(s) 477, 737, 746
BstNI CCWGG 3 cut(s) 566, 702, 858
BstNSI RCATGY 2 cut(s) 428, 499
BstSCI CCNGG 5 cut(s) 564, 612, 700, 838, 856
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 514, 736
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BstZ17I GTATAC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 848
BtgZI GCGATG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 295, 833
Cac8I GCNNGC 2 cut(s) 54, 71
CfoI GCGC 1 cut(s) 786
Cfr13I GGNCC 2 cut(s) 333, 797
CseI GACGC 1 cut(s) 472
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 2 cut(s) 398, 625
CviQI GTAC 2 cut(s) 398, 625
DdeI CTNAG 1 cut(s) 683
DpnI GATC 3 cut(s) 270, 454, 777
DpnII GATC 3 cut(s) 268, 452, 775
Eam1104I CTCTTC 2 cut(s) 92, 101
EarI CTCTTC 2 cut(s) 92, 101
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 848
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 333, 797
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 797
EcoRII CCWGG 3 cut(s) 564, 700, 856
EcoT14I CCWWGG 1 cut(s) 848
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 848
FaqI GGGAC 3 cut(s) 125, 728, 810
FblI GTMKAC 2 cut(s) 368, 609
Fnu4HI GCNGC 3 cut(s) 528, 729, 750
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 528, 729, 750
FspBI CTAG 1 cut(s) 773
GlaI GCGC 1 cut(s) 785
GluI GCNGC 3 cut(s) 528, 729, 750
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 1 cut(s) 287
HapII CCGG 2 cut(s) 613, 840
HgaI GACGC 1 cut(s) 472
HhaI GCGC 1 cut(s) 786
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 3 cut(s) 17, 132, 811
HpaII CCGG 2 cut(s) 613, 840
HphI GGTGA 2 cut(s) 716, 772
Hpy166II GTNNAC 4 cut(s) 165, 297, 369, 610
Hpy188I TCNGA 4 cut(s) 42, 131, 452, 810
Hpy188III TCNNGA 1 cut(s) 815
Hpy8I GTNNAC 4 cut(s) 165, 297, 369, 610
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 219, 259, 421, 425
HpyCH4III ACNGT 3 cut(s) 352, 574, 828
HpyCH4V TGCA 4 cut(s) 530, 710, 752, 831
HpyF10VI GCNNNNNNNGC 3 cut(s) 477, 737, 746
HpyF3I CTNAG 1 cut(s) 683
HspAI GCGC 1 cut(s) 784
Kzo9I GATC 3 cut(s) 268, 452, 775
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 82, 359
Lsp1109I GCAGC 2 cut(s) 514, 736
LweI GCATC 2 cut(s) 697, 727
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 1 cut(s) 773
MaeIII GTNAC 2 cut(s) 219, 760
MalI GATC 3 cut(s) 270, 454, 777
MboI GATC 3 cut(s) 268, 452, 775
MboII GAAGA 9 cut(s) 12, 15, 18, 21, 24, 27, 79, 88, 337
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 4 cut(s) 186, 322, 512, 602
MmeI TCCRAC 3 cut(s) 242, 430, 609
MnlI CCTC 3 cut(s) 137, 153, 517
Mph1103I ATGCAT 1 cut(s) 712
MspI CCGG 2 cut(s) 613, 840
MspR9I CCNGG 5 cut(s) 566, 614, 702, 840, 858
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 3 cut(s) 566, 702, 858
MwoI GCNNNNNNNGC 3 cut(s) 477, 737, 746
NciI CCSGG 2 cut(s) 614, 840
NcoI CCATGG 1 cut(s) 848
NdeII GATC 3 cut(s) 268, 452, 775
NlaIV GGNNCC 3 cut(s) 335, 798, 854
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 760
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 2 cut(s) 428, 499
PciI ACATGT 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 17, 132, 811
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 3 cut(s) 529, 730, 751
PpuMI RGGWCCY 1 cut(s) 797
PscI ACATGT 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 564, 700, 856
PspGI CCWGG 3 cut(s) 564, 700, 856
PspN4I GGNNCC 3 cut(s) 335, 798, 854
PspPI GGNCC 2 cut(s) 333, 797
PspPPI RGGWCCY 1 cut(s) 797
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 2 cut(s) 399, 626
RsaNI GTAC 2 cut(s) 398, 625
SacI GAGCTC 1 cut(s) 87
SalI GTCGAC 1 cut(s) 608
SapI GCTCTTC 1 cut(s) 92
SatI GCNGC 3 cut(s) 528, 729, 750
Sau3AI GATC 3 cut(s) 268, 452, 775
Sau96I GGNCC 2 cut(s) 333, 797
ScrFI CCNGG 5 cut(s) 566, 614, 702, 840, 858
SduI GDGCHC 1 cut(s) 87
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 2 cut(s) 697, 727
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 2 cut(s) 333, 797
Sse9I AATT 4 cut(s) 186, 322, 512, 602
SsiI CCGC 1 cut(s) 729
SspMI CTAG 1 cut(s) 773
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 5 cut(s) 564, 612, 700, 838, 856
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 3 cut(s) 352, 574, 828
TaqI TCGA 1 cut(s) 609
TasI AATT 4 cut(s) 186, 322, 512, 602
TatI WGTACW 1 cut(s) 624
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 3 cut(s) 17, 132, 811
TscAI CASTG 2 cut(s) 295, 833
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 2 cut(s) 527, 749
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 4 cut(s) 404, 544, 615, 649
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 295, 833
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 2 cut(s) 333, 797
XapI RAATTY 1 cut(s) 602
XceI RCATGY 2 cut(s) 428, 499
XcmI CCANNNNNNNNNTGG 3 cut(s) 72, 232, 739
XmiI GTMKAC 2 cut(s) 368, 609
XspI CTAG 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.