Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002039.1

Orthogroup ID

OG0002424

Physical Location & Seq

Genomic Coordinates Forward (+)

19885 .. 20367

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002039.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgggttgcaacgatctcatccatctctcctgcaagaaagctgcagctagtgatcccaatttgagctacaacttctgtgtttcaagccttgagaccatccccaaaagccatggagcagaccttgagcaacttgtggcccttacacttaacctcaccatatccaacgcaaccagcatcaattccaccatttcgaagcttttggtcgataaaaaattcgacgagtacgcaaaggagtgcttgcaagactgcttagagctgtattcggatgccgttcctaccctacaagaagctgttggtgcctttaaggccaaggattatggtaaagctaacatagaaatcagtgctgccatggatgcatctagcacttgtgaagacgggttcatggagaagaaaggtgaagtttatccattaaaaagggagaatgataacttcagccaattgaacgtcatctctcttgcttttatcaacacattaggtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

160

Amino Acids

17.41

Weight (kDa)

4.79

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54620 AT5G46930 AT5G46940 AT5G46950 AT5G46960 AT5G46970 AT5G46980 AT5G46990
fragaria_vesca	FvH4_5g20930 FvH4_5g20940 FvH4_5g21030
malus_domestica	MD06G1042400.v1.1
prunus_persica	Prupe.5G048900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0207981 RchiOBHm_Chr7g0207991 RchiOBHm_Chr7g0208771
rosa_laevigata	RLG00000003264 RLG00000003266
rosa_multiflora	Rmu_co8457191.1_g000001 Rmu_sc0002039.1_g000003
rosa_roxburghii	Rroxscaffold_3G00250910 Rroxscaffold_3G00250930
rosa_rugosa	Rorug07G0100800 Rorug07G0100900 Rorug07G0105600
rosa_samantha	Rh7AG235300 Rh7AG235500 Rh7AG240700 Rh7BG230000 Rh7BG230200 Rh7CG249600 Rh7CG249700 Rh7CG255200 Rh7DG240500 Rh7DG240600 Rh7DG246700
rosa_wichuraiana	Rw0G001220 Rw0G014100 Rw0G014120 Rw0G020340 Rw0G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	84, 442
AluBI	AGCT	7 cut(s)	41, 47, 66, 196, 256, 290, 326
AluI	AGCT	7 cut(s)	41, 47, 66, 196, 256, 290, 326
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	135, 306
ApeKI	GCWGC	3 cut(s)	41, 44, 344
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	145, 407
AsuII	TTCGAA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	28, 56, 331
BccI	CCATC	2 cut(s)	30, 104
BceAI	ACGGC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	48, 360
BfmI	CTRYAG	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	3 cut(s)	42, 45, 345
BlsI	GCNGC	3 cut(s)	43, 46, 346
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	4 cut(s)	183, 256, 343, 365
BpiI	GAAGAC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	110, 143
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	109, 309, 348
BseDI	CCNNGG	3 cut(s)	109, 309, 348
BseGI	GGATG	4 cut(s)	18, 96, 271, 358
BseXI	GCAGC	3 cut(s)	28, 56, 331
BshFI	GGCC	2 cut(s)	137, 308
BshNI	GGYRCC	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	137, 308
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	13, 52
Bsp19I	CCATGG	2 cut(s)	109, 348
BspANI	GGCC	2 cut(s)	137, 308
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	109, 309, 348
BssMI	GATC	2 cut(s)	13, 52
BssT1I	CCWWGG	3 cut(s)	109, 309, 348
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	250
BstDSI	CCRYGG	2 cut(s)	109, 348
BstF5I	GGATG	4 cut(s)	18, 96, 271, 358
BstKTI	GATC	2 cut(s)	16, 55
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	13, 52
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 305, 353
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	28, 56, 331
BstV2I	GAAGAC	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	137, 308
BtgI	CCRYGG	2 cut(s)	109, 348
BtsCI	GGATG	4 cut(s)	18, 96, 271, 358
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	110, 349, 382
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	2 cut(s)	15, 54
DpnII	GATC	2 cut(s)	13, 52
Eco130I	CCWWGG	3 cut(s)	109, 309, 348
Eco31I	GGTCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	415
EcoT14I	CCWWGG	3 cut(s)	109, 309, 348
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	3 cut(s)	109, 309, 348
FaeI	CATG	3 cut(s)	113, 352, 385
FaiI	YATR	6 cut(s)	111, 158, 318, 332, 350, 383
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	3 cut(s)	109, 348, 381
Fnu4HI	GCNGC	3 cut(s)	42, 45, 345
FokI	GGATG	4 cut(s)	5, 83, 278, 365
Fsp4HI	GCNGC	3 cut(s)	42, 45, 345
FspBI	CTAG	2 cut(s)	48, 360
GluI	GCNGC	3 cut(s)	42, 45, 345
HaeIII	GGCC	2 cut(s)	137, 308
Hin1II	CATG	3 cut(s)	113, 352, 385
HindIII	AAGCTT	1 cut(s)	194
HphI	GGTGA	2 cut(s)	145, 407
Hpy188I	TCNGA	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	9, 33, 44, 241, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 305, 353
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	113, 352, 385
Kzo9I	GATC	2 cut(s)	13, 52
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	43, 184
Lsp1109I	GCAGC	3 cut(s)	28, 56, 331
LweI	GCATC	4 cut(s)	183, 256, 343, 365
MaeI	CTAG	2 cut(s)	48, 360
MaeII	ACGT	1 cut(s)	444
MalI	GATC	2 cut(s)	15, 54
MboI	GATC	2 cut(s)	13, 52
MboII	GAAGA	2 cut(s)	383, 400
MfeI	CAATTG	1 cut(s)	437
MluCI	AATT	4 cut(s)	58, 178, 212, 437
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	358
MseI	TTAA	3 cut(s)	147, 303, 410
MunI	CAATTG	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	296, 305, 353
NcoI	CCATGG	2 cut(s)	109, 348
NdeII	GATC	2 cut(s)	13, 52
NlaIII	CATG	3 cut(s)	113, 352, 385
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	43, 46, 346
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	147, 303, 410
SatI	GCNGC	3 cut(s)	42, 45, 345
Sau3AI	GATC	2 cut(s)	13, 52
Sau96I	GGNCC	1 cut(s)	136
SfaNI	GCATC	4 cut(s)	183, 256, 343, 365
SfcI	CTRYAG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	89, 122
SmoI	CTYRAG	2 cut(s)	89, 122
Sse9I	AATT	4 cut(s)	58, 178, 212, 437
SspMI	CTAG	2 cut(s)	48, 360
StyI	CCWWGG	3 cut(s)	109, 309, 348
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	191, 204, 216
TasI	AATT	4 cut(s)	58, 178, 212, 437
Tru1I	TTAA	3 cut(s)	147, 303, 410
Tru9I	TTAA	3 cut(s)	147, 303, 410
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	3 cut(s)	41, 44, 344
TspDTI	ATGAA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	2 cut(s)	48, 360
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.