AT5G50010

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003125
Physical Location & Seq
Forward (+)
20348615 .. 20350830
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G50010.1

Sequence Viewer

Length: 936 bp
ATGGGACAAGATCGTGGGTTTGGGTTTCCTACTCAGCGCTTGTGTTCCTTGTCTTCCCTAGCTCTGTCTCATCTCGGGAAGCAAGACTTGAATTTAGTATCTAAAACCTGCGGCGACACCACCGACATGTTTTCTACTCGTGGATCTTATCAAGTTTCTACCCAAGTCTCTCAATCCTATTTTGATGGGTATTGTGGATGGGTTCATGGGTCATCCCACCTACAGCAGCAGTTCTTGCCTCCTCAAAACCAATGTATGAAGCAAGTACCTCTTCAAGTAGACGGTGTTATATCTAAAGCTGAGGAACAATGTAGTCAGAAGAGGTTCCTAGTGTTTGATCAGTCTGGAGATCAGACGACTTTGCTACTCGCTTCCGATATACGGAAATCTTTTGAGACCCTAAAACAGCATGCCTGTCCTGATATGAAGGAAGAGCTCCAAAGAAGCAACAAAGATTTGTTTGTTTGTCACGGAATGCAAGGAAATAGCGAACCGGATTTGAAGGAGGATTCGGAAGAACTAAATGCATTGCTTTACTCTGAAGATGAGAGTGGTTATTGCTCTGAAGAAGATGAGGTTACAAGCGCAGACCATTCCCCAAGCATTGTAGTATCAGGCCGTGAGGACCAAAAAACATTTCTTGGAAGCTATGGACAACCATTAAATGCTAAAAAGAGAAAGATACTCGAAACCTCGAATGAGAGTATGCGGGACGCTGAATCGAGCTGTGGTAGTTGTGACAACACAAGGATTAGTTTTCTGAAACGTTCTAAGCTGTCTAGTAACAAGATAGGAGAAGAGAAGATATTTGAGACTGTAAGCCTCTTGCGCAGTGTAGTCCCCGGGGAGGAACTGGTGGACCCGATCTTAGTCATCGATAGAGCCATTGATTACCTTAAATCATTGAAGATGGAAGCGAAAAATCGAGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.71

Weight (kDa)

5.08

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 259 - 304 4.5e-09 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 279
AciI CCGC 2 cut(s) 111, 709
AclI AACGTT 1 cut(s) 766
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 2 cut(s) 561, 585
AfaI GTAC 1 cut(s) 267
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 381, 847
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 4 cut(s) 91, 275, 502, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AluBI AGCT 6 cut(s) 62, 299, 436, 648, 726, 775
AluI AGCT 6 cut(s) 62, 299, 436, 648, 726, 775
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 4 cut(s) 72, 172, 389, 806
AlwI GGATC 1 cut(s) 151
Ama87I CYCGRG 2 cut(s) 74, 842
Aor51HI AGCGCT 1 cut(s) 38
AoxI GGCC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 3 cut(s) 39, 587, 831
AspS9I GGNCC 2 cut(s) 625, 859
AsuC2I CCSGG 2 cut(s) 843, 844
AvaI CYCGRG 2 cut(s) 74, 842
AvaII GGWCC 2 cut(s) 625, 859
BanII GRGCYC 1 cut(s) 438
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 438
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 179, 192, 904
BceAI ACGGC 1 cut(s) 603
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 2 cut(s) 843, 844
BcoDI GTCTC 4 cut(s) 72, 172, 389, 806
BfaI CTAG 3 cut(s) 59, 329, 780
BfmI CTRYAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 2 cut(s) 112, 227
BlsI GCNGC 2 cut(s) 113, 228
Bme1390I CCNGG 2 cut(s) 843, 844
Bme18I GGWCC 2 cut(s) 625, 859
BmeT110I CYCGRG 2 cut(s) 74, 842
BmgT120I GGNCC 2 cut(s) 625, 859
BmiI GGNNCC 2 cut(s) 326, 861
BmrFI CCNGG 2 cut(s) 843, 844
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 843, 844
Bsa29I ATCGAT 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 841, 842, 843
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 847
Bse1I ACTGG 1 cut(s) 858
Bse3DI GCAATG 1 cut(s) 527
BseCI ATCGAT 1 cut(s) 876
BseDI CCNNGG 3 cut(s) 841, 842, 843
BseGI GGATG 2 cut(s) 203, 212
BseLI CCNNNNNNNGG 2 cut(s) 381, 847
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 2 cut(s) 47, 291
BseNI ACTGG 1 cut(s) 858
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 618
BshVI ATCGAT 1 cut(s) 876
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 2 cut(s) 74, 842
BsiSI CCGG 2 cut(s) 494, 843
BslFI GGGAC 3 cut(s) 18, 725, 824
BslI CCNNNNNNNGG 2 cut(s) 381, 847
BsmAI GTCTC 4 cut(s) 72, 172, 389, 806
BsmFI GGGAC 3 cut(s) 18, 725, 824
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 1 cut(s) 618
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 2 cut(s) 74, 842
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 5 cut(s) 10, 143, 337, 349, 864
BspACI CCGC 2 cut(s) 111, 709
BspANI GGCC 1 cut(s) 618
BspCNI CTCAG 2 cut(s) 46, 292
BspDI ATCGAT 1 cut(s) 876
BspLI GGNNCC 2 cut(s) 326, 861
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 1 cut(s) 858
BssECI CCNNGG 3 cut(s) 841, 842, 843
BssMI GATC 5 cut(s) 10, 143, 337, 349, 864
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 284, 817
Bst6I CTCTTC 4 cut(s) 276, 314, 426, 792
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 4 cut(s) 33, 300, 771, 868
BstF5I GGATG 2 cut(s) 203, 212
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 3 cut(s) 39, 587, 831
BstKTI GATC 5 cut(s) 13, 146, 340, 352, 867
BstMAI GTCTC 4 cut(s) 72, 172, 389, 806
BstMBI GATC 5 cut(s) 10, 143, 337, 349, 864
BstMWI GCNNNNNNNGC 2 cut(s) 235, 828
BstNSI RCATGY 2 cut(s) 130, 413
BstSCI CCNGG 2 cut(s) 841, 842
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
Bsu15I ATCGAT 1 cut(s) 876
BsuRI GGCC 1 cut(s) 618
BsuTUI ATCGAT 1 cut(s) 876
BtsCI GGATG 2 cut(s) 203, 212
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 1 cut(s) 838
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 3 cut(s) 39, 587, 831
Cfr13I GGNCC 2 cut(s) 625, 859
Cfr9I CCCGGG 1 cut(s) 842
ClaI ATCGAT 1 cut(s) 876
CseI GACGC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 266
CviAII CATG 4 cut(s) 127, 206, 410, 933
CviJI RGCY 9 cut(s) 62, 299, 436, 618, 648, 726, 775, 822, 884
CviKI_1 RGCY 9 cut(s) 62, 299, 436, 618, 648, 726, 775, 822, 884
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 4 cut(s) 33, 300, 771, 868
DpnI GATC 5 cut(s) 12, 145, 339, 351, 866
DpnII GATC 5 cut(s) 10, 143, 337, 349, 864
Eam1104I CTCTTC 4 cut(s) 276, 314, 426, 792
EarI CTCTTC 4 cut(s) 276, 314, 426, 792
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 2 cut(s) 625, 859
Eco47III AGCGCT 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 561, 585
Eco88I CYCGRG 2 cut(s) 74, 842
EcoICRI GAGCTC 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 438
FaeI CATG 4 cut(s) 130, 209, 413, 936
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 255, 287
FaqI GGGAC 3 cut(s) 18, 725, 824
FatI CATG 4 cut(s) 126, 205, 409, 932
FauI CCCGC 1 cut(s) 702
FbaI TGATCA 1 cut(s) 337
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 112, 227
FokI GGATG 2 cut(s) 199, 210
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 2 cut(s) 112, 227
FspBI CTAG 3 cut(s) 59, 329, 780
FspI TGCGCA 1 cut(s) 830
GlaI GCGC 3 cut(s) 38, 586, 830
GluI GCNGC 2 cut(s) 112, 227
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 1 cut(s) 618
HapII CCGG 2 cut(s) 494, 843
HgaI GACGC 1 cut(s) 722
HhaI GCGC 3 cut(s) 39, 587, 831
Hin1II CATG 4 cut(s) 130, 209, 413, 936
Hin6I GCGC 3 cut(s) 37, 585, 829
HinP1I GCGC 3 cut(s) 37, 585, 829
HinfI GANTC 2 cut(s) 509, 719
HpaII CCGG 2 cut(s) 494, 843
Hpy166II GTNNAC 2 cut(s) 280, 859
Hpy188I TCNGA 7 cut(s) 318, 354, 376, 514, 541, 565, 762
Hpy188III TCNNGA 4 cut(s) 76, 345, 419, 926
Hpy8I GTNNAC 2 cut(s) 280, 859
HpyAV CCTTC 2 cut(s) 421, 496
HpyCH4III ACNGT 2 cut(s) 284, 817
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 2 cut(s) 478, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 828
HpyF3I CTNAG 4 cut(s) 33, 300, 771, 868
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 4 cut(s) 130, 209, 413, 936
HspAI GCGC 3 cut(s) 37, 585, 829
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 5 cut(s) 10, 143, 337, 349, 864
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 441
LpnPI CCDG 8 cut(s) 121, 330, 427, 432, 507, 600, 839, 856
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 3 cut(s) 59, 329, 780
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 4 cut(s) 467, 577, 737, 782
MalI GATC 5 cut(s) 12, 145, 339, 351, 866
MboI GATC 5 cut(s) 10, 143, 337, 349, 864
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 1 cut(s) 91
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 2 cut(s) 662, 897
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 2 cut(s) 494, 843
MspR9I CCNGG 2 cut(s) 843, 844
Mva1269I GAATGC 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 235, 828
NciI CCSGG 2 cut(s) 843, 844
NdeII GATC 5 cut(s) 10, 143, 337, 349, 864
NlaIII CATG 4 cut(s) 130, 209, 413, 936
NlaIV GGNNCC 2 cut(s) 326, 861
NmuCI GTSAC 2 cut(s) 467, 737
NsbI TGCGCA 1 cut(s) 830
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 2 cut(s) 130, 413
PaeI GCATGC 1 cut(s) 413
PciI ACATGT 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 426
PctI GAATGC 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 509, 719
PkrI GCNGC 2 cut(s) 113, 228
PscI ACATGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 766
PspN4I GGNNCC 2 cut(s) 326, 861
PspPI GGNCC 2 cut(s) 625, 859
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 662, 897
SatI GCNGC 2 cut(s) 112, 227
Sau3AI GATC 5 cut(s) 10, 143, 337, 349, 864
Sau96I GGNCC 2 cut(s) 625, 859
ScrFI CCNGG 2 cut(s) 843, 844
SduI GDGCHC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 221
SinI GGWCC 2 cut(s) 625, 859
SmaI CCCGGG 1 cut(s) 844
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 413
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 111, 709
SspMI CTAG 3 cut(s) 59, 329, 780
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 841, 842
TaaI ACNGT 2 cut(s) 284, 817
TaiI ACGT 1 cut(s) 769
TaqI TCGA 5 cut(s) 687, 695, 722, 876, 925
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 2 cut(s) 509, 719
Tru1I TTAA 2 cut(s) 662, 897
Tru9I TTAA 2 cut(s) 662, 897
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 467, 737
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 2 cut(s) 467, 737
TspDTI ATGAA 3 cut(s) 194, 272, 440
TspGWI ACGGA 2 cut(s) 397, 486
TspMI CCCGGG 1 cut(s) 842
TspRI CASTG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 625, 859
XapI RAATTY 1 cut(s) 91
XceI RCATGY 2 cut(s) 130, 413
XmaI CCCGGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 3 cut(s) 59, 329, 780
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.