Rw7G038170

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
57991086 .. 57991365
280 bp
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UTR
Exon/CDS
Intron
Rw7G038170.1

Sequence Viewer

Length: 162 bp
ATGGTAAGTCAAGCAGCGAGCCAAACAAGATTTCGAGCATTGAAACATGAAAATGGGATTGATGGGAGCGCCACCATAGTTATTAGAGTAATAGCATGCTTTCAACCTCTTCAGGATTGCCAGGCTGAATATTTTCGTCATTTGCTGAAACCTGTCACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.96

Weight (kDa)

8.84

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 43, 104
AjnI CCWGG 1 cut(s) 120
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 159
BseBI CCWGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 19, 97
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 19, 97
CfoI GCGC 1 cut(s) 71
CviAII CATG 2 cut(s) 47, 96
CviJI RGCY 2 cut(s) 21, 125
CviKI_1 RGCY 2 cut(s) 21, 125
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 50, 99
FaiI YATR 3 cut(s) 48, 77, 97
FatI CATG 2 cut(s) 46, 95
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 72
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 50, 99
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 2 cut(s) 50, 99
HspAI GCGC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 98, 107, 134
Lsp1109I GCAGC 1 cut(s) 26
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 154
MboII GAAGA 1 cut(s) 101
MnlI CCTC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
NlaIII CATG 2 cut(s) 50, 99
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 51
SatI GCNGC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 122
SetI ASST 3 cut(s) 109, 154, 161
SgeI CNNG 9 cut(s) 23, 30, 39, 47, 59, 108, 125, 133, 134
SmiMI CAYNNNNRTG 1 cut(s) 51
SphI GCATGC 1 cut(s) 99
SspI AATATT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 120
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 34
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 63
XceI RCATGY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.