Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003125

Physical Location & Seq

Genomic Coordinates Reverse (-)

43295730 .. 43296173

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTGAGCTGGAAGTTCCGAGAGGCAACAACTCCATCCCGCTAGGTAAACGACGTCGTCTGTTCGATCCAGGCCGGCATCTTCCTAGAATTCATGATCATCCTGGAGCACAAGTTCGAGATACTCTCCTCCGATTGGAGCAAGACATAAAAGGAGCTGCCTTTGTCGCTGCCCATGAGCTCCAAGAACTACTGGGAAGTTGTTTAGTTATGGTAAGCCAAGAAGAGAGCCAAGCTAGATTTCGAGTATTGAAACATGAAAATGGGATTGATAGGAGTGCCACCATAATTTCAATCTCTTCAGGATTGCCAGGTGGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

8.03

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50010
fragaria_vesca	FvH4_5g35810
malus_domestica	MD04G1047500.v1.1 MD05G1288900.v1.1 MD08G1192900.v1.1 MD08G1193000.v1.1 MD10G1265000.v1.1 MD15G1381700.v1.1 MD15G1381800.v1.1
prunus_persica	Prupe.1G527600_v2.0.a1 Prupe.1G527700_v2.0.a1 Prupe.4G077000_v2.0.a1 Prupe.8G067700_v2.0.a1
pyrus_communis	pycom08g16640 pycom15g34180
rosa_chinensis	RchiOBHm_Chr5g0013401 RchiOBHm_Chr7g0237501 RchiOBHm_Chr7g0237511
rosa_laevigata	RLG00000000997
rosa_multiflora	Rmu_co8283291.1_g000001 Rmu_sc0013113.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224070 Rroxscaffold_3G00224080
rosa_rugosa	Rorug02G0445800 Rorug02G0445800 Rorug02G0445800 Rorug04G0381500 Rorug06G0077400 Rorug07G0074000 Rorug07G0303700
rosa_samantha	Rh6BG229200 Rh7AG461300 Rh7BG431500 Rh7CG478600 Rh7DG447800
rosa_wichuraiana	Rw7G038170 Rw7G038180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	58
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	253, 294
AjnI	CCWGG	3 cut(s)	70, 103, 310
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	10, 158, 181, 236
AluI	AGCT	4 cut(s)	10, 158, 181, 236
Alw21I	GWGCWC	2 cut(s)	112, 183
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	158, 170
ApoI	RAATTY	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	112, 183
BbvI	GCAGC	2 cut(s)	145, 157
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	72, 105, 312
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	3 cut(s)	44, 87, 237
BisI	GCNGC	2 cut(s)	159, 171
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	160, 172
Bme1390I	CCNGG	3 cut(s)	72, 105, 312
BmrFI	CCNGG	3 cut(s)	72, 105, 312
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	72, 105, 312
BseGI	GGATG	2 cut(s)	36, 100
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	145, 157
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	112, 183
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	112, 183
Bsp143I	GATC	2 cut(s)	67, 97
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	94
BspPI	GGATC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	2 cut(s)	67, 97
BssNI	GRCGYC	1 cut(s)	55
Bst2UI	CCWGG	3 cut(s)	72, 105, 312
Bst6I	CTCTTC	2 cut(s)	219, 304
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	36, 100
BstKTI	GATC	2 cut(s)	70, 100
BstMBI	GATC	2 cut(s)	67, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	3 cut(s)	72, 105, 312
BstSCI	CCNGG	3 cut(s)	70, 103, 310
BstV1I	GCAGC	2 cut(s)	145, 157
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	36, 100
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	75
CviAII	CATG	3 cut(s)	95, 176, 257
CviJI	RGCY	8 cut(s)	5, 10, 75, 158, 181, 219, 231, 236
CviKI_1	RGCY	8 cut(s)	5, 10, 75, 158, 181, 219, 231, 236
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	69, 99
DpnII	GATC	2 cut(s)	67, 97
Eam1104I	CTCTTC	2 cut(s)	219, 304
EarI	CTCTTC	2 cut(s)	219, 304
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	3 cut(s)	70, 103, 310
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	3 cut(s)	98, 179, 260
FaiI	YATR	7 cut(s)	96, 149, 177, 212, 258, 287, 322
FatI	CATG	3 cut(s)	94, 175, 256
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	159, 171
FokI	GGATG	2 cut(s)	23, 87
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	159, 171
FspBI	CTAG	3 cut(s)	44, 87, 237
GluI	GCNGC	2 cut(s)	159, 171
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	3 cut(s)	98, 179, 260
HpaII	CCGG	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	21, 134
Hpy188III	TCNNGA	3 cut(s)	95, 119, 303
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	2 cut(s)	57, 60
HpyCH4IV	ACGT	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	3 cut(s)	98, 179, 260
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	67, 97
LmnI	GCTCC	4 cut(s)	107, 139, 155, 186
LpnPI	CCDG	8 cut(s)	57, 84, 89, 90, 117, 179, 288, 297
Lsp1109I	GCAGC	2 cut(s)	145, 157
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	3 cut(s)	44, 87, 237
MaeII	ACGT	1 cut(s)	55
MalI	GATC	2 cut(s)	69, 99
MboI	GATC	2 cut(s)	67, 97
MboII	GAAGA	3 cut(s)	74, 236, 291
MhlI	GDGCHC	2 cut(s)	112, 183
MluCI	AATT	2 cut(s)	90, 288
MnlI	CCTC	2 cut(s)	17, 140
MroNI	GCCGGC	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	3 cut(s)	72, 105, 312
MvaI	CCWGG	3 cut(s)	72, 105, 312
MwoI	GCNNNNNNNGC	1 cut(s)	167
NaeI	GCCGGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	67, 97
NgoMIV	GCCGGC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	98, 179, 260
PagI	TCATGA	1 cut(s)	94
PdiI	GCCGGC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	160, 172
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	70, 103, 310
PspGI	CCWGG	3 cut(s)	70, 103, 310
PsyI	GACNNNGTC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	2 cut(s)	159, 171
Sau3AI	GATC	2 cut(s)	67, 97
ScrFI	CCNGG	3 cut(s)	72, 105, 312
SduI	GDGCHC	2 cut(s)	112, 183
SetI	ASST	7 cut(s)	12, 49, 58, 160, 183, 238, 316
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	90, 288
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	3 cut(s)	44, 87, 237
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	70, 103, 310
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	66, 118, 244
TasI	AATT	2 cut(s)	90, 288
TseI	GCWGC	2 cut(s)	158, 170
TspDTI	ATGAA	2 cut(s)	83, 273
Tth111I	GACNNNGTC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	90
XspI	CTAG	3 cut(s)	44, 87, 237
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.