Rmu_sc0013113.1_g000010

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013113.1
OG0003125
Physical Location & Seq
Reverse (-)
17174 .. 18256
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013113.1_g000010.1.cds

Sequence Viewer

Length: 1083 bp
atgggtgaggatttcagatcttggattcccgagctgcatgaacggcgaccgcccgatccatattccttgggtgctccttttgtctcggggcaacagaacttcgtttctgcatatagaaaccccggcactagtatgcttttcacaaatggaactctgccggtatatgcatcgcctgggttgccccattcacaactaggcagaccaaatgaacctcacggttggttctattgctggcccagtatccaacaggccttcatgcctgctaaacccactgttctcaaagagaaacattctacttgctcagtccaaaaccctaaggagacattggtaccttgtgtagaccctgacagtaaacagaagagattgcttgtcagcaatccgtcaggggatcaaacaagttttgtctttaattctggattagtgaatcctttgcagtgccctacttcttgggaccaacaaggtgcttactatgtcaatgggaatgatcgtggaactaacagaggttttcaaaacccctcgggaccaattttgactgatgagttaaaaggaagcgatgaatctggtgctgaaagtgagatgcatgaagacacggaggaactgaatgcgttgctctactcagatgatgagagtgattatacagaggacgatgaagttactagcacaggtcattcccccagcacaatgacagttcatgacaagctgaattggtttgaagcaagggaagaagaagttgctagttcttgtggaataactaaaaagcgaaagctatttgatggaggttatgatgatgtaccatccgtattggacactgcgagttccaagaaacccaacagatcagcggagttagaggatgatgcagaatcctgttgtgccttcaacagaagttctgggtctagagaattggactcctcgtccagcaacaagaagatgaagaaggacaaaatacgcgagacagtgagcattctgcaggacataattccaggtgtcaaggggaaagatgcaatggtagtgatcgatgaagccatccactacttaaaatcgctgaagctgaaggccagagctttcggactccagtctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

39.81

Weight (kDa)

5.04

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 948
AciI CCGC 2 cut(s) 50, 839
AclWI GGATC 2 cut(s) 50, 396
AcuI CTGAAG 2 cut(s) 1064, 1070
AfaI GTAC 2 cut(s) 330, 792
AgsI TTSAA 3 cut(s) 509, 713, 877
AhdI GACNNNNNGTC 1 cut(s) 910
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 2 cut(s) 172, 979
AluBI AGCT 5 cut(s) 34, 700, 766, 1048, 1061
AluI AGCT 5 cut(s) 34, 700, 766, 1048, 1061
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 3 cut(s) 88, 314, 944
AlwI GGATC 2 cut(s) 50, 396
Ama87I CYCGRG 3 cut(s) 29, 85, 517
AoxI GGCC 3 cut(s) 233, 249, 1053
ApeKI GCWGC 1 cut(s) 34
Asp718I GGTACC 1 cut(s) 328
AspS9I GGNCC 3 cut(s) 234, 451, 521
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 3 cut(s) 29, 85, 517
AvaII GGWCC 2 cut(s) 451, 521
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 440
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 21
BccI CCATC 3 cut(s) 767, 802, 1031
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 174, 981
BciVI GTATCC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 88, 314, 944
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 5 cut(s) 129, 194, 657, 735, 894
BfmI CTRYAG 1 cut(s) 965
BfuI GTATCC 1 cut(s) 251
BglII AGATCT 1 cut(s) 17
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 123, 174, 981
Bme18I GGWCC 2 cut(s) 451, 521
BmeRI GACNNNNNGTC 1 cut(s) 910
BmeT110I CYCGRG 3 cut(s) 29, 85, 517
BmgT120I GGNCC 3 cut(s) 234, 451, 521
BmiI GGNNCC 3 cut(s) 330, 452, 522
BmrFI CCNGG 3 cut(s) 123, 174, 981
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 4 cut(s) 176, 567, 844, 988
BmuI ACTGGG 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 1055
BpuMI CCSGG 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 1014
BsaJI CCNNGG 4 cut(s) 66, 121, 173, 516
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 237, 1072
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 1008
BseBI CCWGG 2 cut(s) 174, 981
BseCI ATCGAT 1 cut(s) 1014
BseDI CCNNGG 4 cut(s) 66, 121, 173, 516
BseGI GGATG 3 cut(s) 794, 856, 1023
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 2 cut(s) 315, 630
BseNI ACTGG 2 cut(s) 237, 1072
BseRI GAGGAG 1 cut(s) 898
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 674
Bsh1236I CGCG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 235, 251, 1055
BshNI GGYRCC 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 1014
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 3 cut(s) 29, 85, 517
BsiSI CCGG 2 cut(s) 123, 158
BslFI GGGAC 2 cut(s) 464, 534
BsmAI GTCTC 3 cut(s) 88, 314, 944
BsmFI GGGAC 2 cut(s) 464, 534
BsmI GAATGC 2 cut(s) 607, 960
BsnI GGCC 3 cut(s) 235, 251, 1055
BsoBI CYCGRG 3 cut(s) 29, 85, 517
Bsp1286I GDGCHC 2 cut(s) 76, 440
Bsp143I GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
BspACI CCGC 2 cut(s) 50, 839
BspANI GGCC 3 cut(s) 235, 251, 1055
BspCNI CTCAG 2 cut(s) 314, 629
BspDI ATCGAT 1 cut(s) 1014
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 3 cut(s) 330, 452, 522
BspMAI CTGCAG 1 cut(s) 969
BspPI GGATC 2 cut(s) 50, 396
BspT107I GGYRCC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 1008
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 237, 1072
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 66, 121, 173, 516
BssMI GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 174, 981
Bst4CI ACNGT 5 cut(s) 218, 274, 350, 688, 955
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 233, 261
BstDEI CTNAG 3 cut(s) 301, 315, 616
BstF5I GGATG 3 cut(s) 794, 856, 1023
BstFNI CGCG 1 cut(s) 948
BstKTI GATC 6 cut(s) 20, 58, 391, 487, 836, 1014
BstMAI GTCTC 3 cut(s) 88, 314, 944
BstMBI GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 43, 178
BstNI CCWGG 2 cut(s) 174, 981
BstPAI GACNNNNGTC 1 cut(s) 1072
BstSCI CCNGG 3 cut(s) 121, 172, 979
BstSFI CTRYAG 1 cut(s) 965
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 1014
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 3 cut(s) 235, 251, 1055
BsuTUI ATCGAT 1 cut(s) 1014
BtgZI GCGATG 2 cut(s) 153, 567
BtsCI GGATG 3 cut(s) 794, 856, 1023
BtsI GCAGTG 2 cut(s) 440, 807
BtsIMutI CAGTG 4 cut(s) 270, 440, 807, 960
Cac8I GCNNGC 2 cut(s) 233, 261
CciI TCATGA 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 234, 451, 521
ClaI ATCGAT 1 cut(s) 1014
Csp6I GTAC 2 cut(s) 329, 791
CviAII CATG 4 cut(s) 38, 256, 581, 692
CviJI RGCY 9 cut(s) 34, 235, 251, 700, 766, 1022, 1048, 1055, 1061
CviKI_1 RGCY 9 cut(s) 34, 235, 251, 700, 766, 1022, 1048, 1055, 1061
CviQI GTAC 2 cut(s) 329, 791
DdeI CTNAG 3 cut(s) 301, 315, 616
DpnI GATC 6 cut(s) 19, 57, 390, 486, 835, 1013
DpnII GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
DriI GACNNNNNGTC 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 353
Eam1105I GACNNNNNGTC 1 cut(s) 910
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 451, 521
Eco57I CTGAAG 2 cut(s) 1064, 1070
Eco81I CCTNAGG 1 cut(s) 315
Eco88I CYCGRG 3 cut(s) 29, 85, 517
EcoRII CCWGG 2 cut(s) 172, 979
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 2 cut(s) 169, 582
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 41, 259, 584, 695
FaqI GGGAC 2 cut(s) 464, 534
FatI CATG 4 cut(s) 37, 255, 580, 691
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 3 cut(s) 781, 863, 1010
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 5 cut(s) 129, 194, 657, 735, 894
GluI GCNGC 1 cut(s) 35
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 1055
HaeIII GGCC 3 cut(s) 235, 251, 1055
HapII CCGG 2 cut(s) 123, 158
Hin1II CATG 4 cut(s) 41, 259, 584, 695
HinfI GANTC 6 cut(s) 25, 424, 557, 860, 905, 1068
HpaII CCGG 2 cut(s) 123, 158
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 340, 353
Hpy188I TCNGA 4 cut(s) 17, 619, 1067, 1082
Hpy188III TCNNGA 5 cut(s) 29, 414, 519, 692, 894
Hpy8I GTNNAC 2 cut(s) 340, 353
HpyAV CCTTC 4 cut(s) 262, 883, 928, 1045
HpyCH4III ACNGT 5 cut(s) 218, 274, 350, 688, 955
HpyCH4V TGCA 8 cut(s) 37, 110, 167, 433, 580, 857, 967, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 178
HpyF3I CTNAG 3 cut(s) 301, 315, 616
Hsp92II CATG 4 cut(s) 41, 259, 584, 695
KpnI GGTACC 1 cut(s) 332
Kzo9I GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 4 cut(s) 176, 567, 844, 988
MaeI CTAG 5 cut(s) 129, 194, 657, 735, 894
MaeIII GTNAC 1 cut(s) 652
MalI GATC 6 cut(s) 19, 57, 390, 486, 835, 1013
MboI GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
MboII GAAGA 6 cut(s) 370, 596, 734, 737, 937, 943
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 76, 440
MluCI AATT 5 cut(s) 409, 525, 703, 899, 975
MlyI GAGTC 2 cut(s) 899, 1062
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 8 cut(s) 222, 494, 526, 586, 634, 770, 841, 919
Mph1103I ATGCAT 2 cut(s) 169, 582
MseI TTAA 3 cut(s) 408, 542, 1034
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 2 cut(s) 123, 158
MspR9I CCNGG 3 cut(s) 123, 174, 981
Mva1269I GAATGC 2 cut(s) 607, 960
MvaI CCWGG 2 cut(s) 174, 981
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 2 cut(s) 43, 178
NciI CCSGG 1 cut(s) 123
NdeII GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
NlaIII CATG 4 cut(s) 41, 259, 584, 695
NlaIV GGNNCC 3 cut(s) 330, 452, 522
NsiI ATGCAT 2 cut(s) 169, 582
PagI TCATGA 1 cut(s) 691
PceI AGGCCT 1 cut(s) 251
PctI GAATGC 2 cut(s) 607, 960
PfeI GAWTC 4 cut(s) 25, 424, 557, 860
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 2 cut(s) 899, 1062
PpsI GAGTC 2 cut(s) 899, 1062
PshAI GACNNNNGTC 1 cut(s) 1072
Psp6I CCWGG 2 cut(s) 172, 979
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 2 cut(s) 172, 979
PspN4I GGNNCC 3 cut(s) 330, 452, 522
PspPI GGNCC 3 cut(s) 234, 451, 521
PstI CTGCAG 1 cut(s) 969
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 330, 792
RsaNI GTAC 2 cut(s) 329, 791
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 3 cut(s) 408, 542, 1034
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 6 cut(s) 17, 55, 388, 484, 833, 1011
Sau96I GGNCC 3 cut(s) 234, 451, 521
SchI GAGTC 2 cut(s) 899, 1062
ScrFI CCNGG 3 cut(s) 123, 174, 981
SduI GDGCHC 2 cut(s) 76, 440
SfaNI GCATC 4 cut(s) 176, 567, 844, 988
SfcI CTRYAG 1 cut(s) 965
SinI GGWCC 2 cut(s) 451, 521
SmiMI CAYNNNNRTG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 5 cut(s) 409, 525, 703, 899, 975
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 2 cut(s) 50, 839
SspMI CTAG 5 cut(s) 129, 194, 657, 735, 894
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 121, 172, 979
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 5 cut(s) 218, 274, 350, 688, 955
TaqI TCGA 1 cut(s) 1014
TasI AATT 5 cut(s) 409, 525, 703, 899, 975
TfiI GAWTC 4 cut(s) 25, 424, 557, 860
Tru1I TTAA 3 cut(s) 408, 542, 1034
Tru9I TTAA 3 cut(s) 408, 542, 1034
TscAI CASTG 4 cut(s) 277, 440, 814, 960
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 9 cut(s) 54, 222, 244, 570, 597, 663, 680, 944, 1032
TspGWI ACGGA 3 cut(s) 369, 605, 787
TspRI CASTG 4 cut(s) 277, 440, 814, 960
VpaK11BI GGWCC 2 cut(s) 451, 521
XbaI TCTAGA 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 5 cut(s) 129, 194, 657, 735, 894
Zsp2I ATGCAT 2 cut(s) 169, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.