Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003125

Physical Location & Seq

Genomic Coordinates Reverse (-)

24848561 .. 24850050

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1193000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGTGTGCCAAGCAGCGAGCCAAACAAGATTTCGGGCATTGAAACACGAAAATGGGATTGATGGGAGCGCCACCATAATTGTTAGAGTAATAGCATGCTTTCAACCTCTCCAGGATTGCCAGGCTGAATATTTTCGACATTTGCTGAAACCCGTAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

54

Amino Acids

5.98

Weight (kDa)

8.63

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50010
fragaria_vesca	FvH4_5g35810
malus_domestica	MD04G1047500.v1.1 MD05G1288900.v1.1 MD08G1192900.v1.1 MD08G1193000.v1.1 MD10G1265000.v1.1 MD15G1381700.v1.1 MD15G1381800.v1.1
prunus_persica	Prupe.1G527600_v2.0.a1 Prupe.1G527700_v2.0.a1 Prupe.4G077000_v2.0.a1 Prupe.8G067700_v2.0.a1
pyrus_communis	pycom08g16640 pycom15g34180
rosa_chinensis	RchiOBHm_Chr5g0013401 RchiOBHm_Chr7g0237501 RchiOBHm_Chr7g0237511
rosa_laevigata	RLG00000000997
rosa_multiflora	Rmu_co8283291.1_g000001 Rmu_sc0013113.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224070 Rroxscaffold_3G00224080
rosa_rugosa	Rorug02G0445800 Rorug02G0445800 Rorug02G0445800 Rorug04G0381500 Rorug06G0077400 Rorug07G0074000 Rorug07G0303700
rosa_samantha	Rh6BG229200 Rh7AG461300 Rh7BG431500 Rh7CG478600 Rh7DG447800
rosa_wichuraiana	Rw7G038170 Rw7G038180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	43, 104
AjnI	CCWGG	2 cut(s)	111, 120
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
ApeKI	GCWGC	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	113, 122
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	113, 122
BmrFI	CCNGG	2 cut(s)	113, 122
BpmI	CTGGAG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	113, 122
BseXI	GCAGC	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	113, 122
BstC8I	GCNNGC	2 cut(s)	19, 97
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	113, 122
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	111, 120
BstV1I	GCAGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	19, 97
CfoI	GCGC	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	1 cut(s)	96
CviJI	RGCY	2 cut(s)	21, 125
CviKI_1	RGCY	2 cut(s)	21, 125
EcoRII	CCWGG	2 cut(s)	111, 120
FaeI	CATG	1 cut(s)	99
FaiI	YATR	2 cut(s)	77, 97
FatI	CATG	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	72
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	99
HspAI	GCGC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	98, 107, 125, 134
Lsp1109I	GCAGC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	154
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	113, 122
MvaI	CCWGG	2 cut(s)	113, 122
NlaIII	CATG	1 cut(s)	99
NspI	RCATGY	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	111, 120
PspGI	CCWGG	2 cut(s)	111, 120
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	113, 122
SetI	ASST	2 cut(s)	109, 161
SmiMI	CAYNNNNRTG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	1 cut(s)	78
SspI	AATATT	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	111, 120
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	78
TseI	GCWGC	1 cut(s)	14
XceI	RCATGY	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.