Rmu_co8283291.1_g000001

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8283291.1
OG0003125
Physical Location & Seq
Forward (+)
1 .. 661
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8283291.1_g000001.1.cds

Sequence Viewer

Length: 661 bp
gaatcctttgcagtgccctacttcttgggaccaacaaggtgcttactatgtcaatgggaatgatcgtggaactaacagaggttttcaaaacccctcgggaccaattttgactgatgagttaaaaggaagcgatgaatctggtgctgaaagtgagatgcatgaagacacggaggaactgaatgcgttgctctactcagatgatgagagtgattatacagaggacgatgaagttactagcacaggtcattcccccagcacaatgacagttcatgacaagctgaattggtttgaagcaagggaagaagaagttgctagttcttgtggaataactaaaaagcgaaagctatttgatggaggttatgatgatgtaccatccgtattggacactgcgagttccaagaaacccaacagatcagcggagttagaggatgatgcagaatcctgttgtgccttcaacagaagttctgggtctagagaattggactcctcgtccagcaacaagaagatgaagaaggacaaaatacgcgagacagtgagcattctgcaggacataattccaggtgtcaaggggaaagatgcaatggtagtgatcgatgaagccatccactacttaaaatcgctgaagctgaaggccagagctttcggactccagtctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.14

Weight (kDa)

4.65

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 526
AciI CCGC 1 cut(s) 417
AcuI CTGAAG 2 cut(s) 642, 648
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 3 cut(s) 87, 291, 455
AhdI GACNNNNNGTC 1 cut(s) 488
AjnI CCWGG 1 cut(s) 557
AluBI AGCT 4 cut(s) 278, 344, 626, 639
AluI AGCT 4 cut(s) 278, 344, 626, 639
Alw26I GTCTC 1 cut(s) 522
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 631
AspS9I GGNCC 2 cut(s) 29, 99
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 2 cut(s) 29, 99
BaeGI GKGCMC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 169
BccI CCATC 3 cut(s) 345, 380, 609
BciT130I CCWGG 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 3 cut(s) 235, 313, 472
BfmI CTRYAG 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 2 cut(s) 29, 99
BmeRI GACNNNNNGTC 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 29, 99
BmiI GGNNCC 2 cut(s) 30, 100
BmrFI CCNGG 1 cut(s) 559
BmsI GCATC 3 cut(s) 145, 422, 566
BoxI GACNNNNGTC 1 cut(s) 650
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 633
Bsa29I ATCGAT 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 1 cut(s) 559
BseCI ATCGAT 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 3 cut(s) 372, 434, 601
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 650
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 1 cut(s) 633
BshVI ATCGAT 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 42, 112
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 2 cut(s) 42, 112
BsmI GAATGC 2 cut(s) 185, 538
BsnI GGCC 1 cut(s) 633
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 62, 411, 589
BspACI CCGC 1 cut(s) 417
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 592
BspFNI CGCG 1 cut(s) 526
BspHI TCATGA 1 cut(s) 269
BspLI GGNNCC 2 cut(s) 30, 100
BspMAI CTGCAG 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 1 cut(s) 650
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 3 cut(s) 62, 411, 589
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 2 cut(s) 266, 533
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 3 cut(s) 372, 434, 601
BstFNI CGCG 1 cut(s) 526
BstKTI GATC 3 cut(s) 65, 414, 592
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 3 cut(s) 62, 411, 589
BstNI CCWGG 1 cut(s) 559
BstPAI GACNNNNGTC 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 592
BsuRI GGCC 1 cut(s) 633
BsuTUI ATCGAT 1 cut(s) 592
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 3 cut(s) 372, 434, 601
BtsI GCAGTG 2 cut(s) 18, 385
BtsIMutI CAGTG 3 cut(s) 18, 385, 538
CciI TCATGA 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 29, 99
ClaI ATCGAT 1 cut(s) 592
Csp6I GTAC 1 cut(s) 369
CviAII CATG 2 cut(s) 159, 270
CviJI RGCY 6 cut(s) 278, 344, 600, 626, 633, 639
CviKI_1 RGCY 6 cut(s) 278, 344, 600, 626, 633, 639
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 64, 413, 591
DpnII GATC 3 cut(s) 62, 411, 589
DriI GACNNNNNGTC 1 cut(s) 488
Eam1105I GACNNNNNGTC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 29, 99
Eco57I CTGAAG 2 cut(s) 642, 648
Eco88I CYCGRG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 2 cut(s) 162, 273
FaiI YATR 6 cut(s) 49, 160, 214, 271, 361, 552
FaqI GGGAC 2 cut(s) 42, 112
FatI CATG 2 cut(s) 158, 269
FokI GGATG 3 cut(s) 359, 441, 588
FspBI CTAG 3 cut(s) 235, 313, 472
GsaI CCCAGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 1 cut(s) 633
Hin1II CATG 2 cut(s) 162, 273
HinfI GANTC 5 cut(s) 2, 135, 438, 483, 646
Hpy188I TCNGA 3 cut(s) 197, 645, 660
Hpy188III TCNNGA 3 cut(s) 97, 270, 472
HpyAV CCTTC 3 cut(s) 461, 506, 623
HpyCH4III ACNGT 2 cut(s) 266, 533
HpyCH4V TGCA 5 cut(s) 11, 158, 435, 545, 579
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 2 cut(s) 162, 273
Kzo9I GATC 3 cut(s) 62, 411, 589
LweI GCATC 3 cut(s) 145, 422, 566
MaeI CTAG 3 cut(s) 235, 313, 472
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 64, 413, 591
MboI GATC 3 cut(s) 62, 411, 589
MboII GAAGA 5 cut(s) 174, 312, 315, 515, 521
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 103, 281, 477, 553
MlyI GAGTC 2 cut(s) 477, 640
MnlI CCTC 7 cut(s) 72, 104, 164, 212, 348, 419, 497
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 2 cut(s) 120, 612
MspA1I CMGCKG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 559
Mva1269I GAATGC 2 cut(s) 185, 538
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 526
NdeII GATC 3 cut(s) 62, 411, 589
NlaIII CATG 2 cut(s) 162, 273
NlaIV GGNNCC 2 cut(s) 30, 100
NsiI ATGCAT 1 cut(s) 160
PagI TCATGA 1 cut(s) 269
PctI GAATGC 2 cut(s) 185, 538
PfeI GAWTC 3 cut(s) 2, 135, 438
PleI GAGTC 2 cut(s) 477, 640
PpsI GAGTC 2 cut(s) 477, 640
PshAI GACNNNNGTC 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 2 cut(s) 30, 100
PspPI GGNCC 2 cut(s) 29, 99
PstI CTGCAG 1 cut(s) 547
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 120, 612
Sau3AI GATC 3 cut(s) 62, 411, 589
Sau96I GGNCC 2 cut(s) 29, 99
SchI GAGTC 2 cut(s) 477, 640
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 41, 83, 245, 280, 346, 359, 563, 628, 641
SfaNI GCATC 3 cut(s) 145, 422, 566
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 2 cut(s) 29, 99
Sse9I AATT 4 cut(s) 103, 281, 477, 553
SsiI CCGC 1 cut(s) 417
SspMI CTAG 3 cut(s) 235, 313, 472
StyD4I CCNGG 1 cut(s) 557
TaaI ACNGT 2 cut(s) 266, 533
TaqI TCGA 1 cut(s) 592
TasI AATT 4 cut(s) 103, 281, 477, 553
TfiI GAWTC 3 cut(s) 2, 135, 438
Tru1I TTAA 2 cut(s) 120, 612
Tru9I TTAA 2 cut(s) 120, 612
TscAI CASTG 3 cut(s) 18, 392, 538
TspDTI ATGAA 6 cut(s) 148, 175, 241, 258, 522, 610
TspGWI ACGGA 2 cut(s) 183, 365
TspRI CASTG 3 cut(s) 18, 392, 538
VpaK11BI GGWCC 2 cut(s) 29, 99
XbaI TCTAGA 1 cut(s) 471
XspI CTAG 3 cut(s) 235, 313, 472
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.